data_1GM4 # _model_server_result.job_id 6Ys52E6CHikggBATR0_aRg _model_server_result.datetime_utc '2024-10-24 04:24:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1gm4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 1GM4 # _exptl.entry_id 1GM4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1GM4 _cell.length_a 61.49 _cell.length_b 61.49 _cell.length_c 105.66 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GM4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 30 A CYS 30 1_555 B CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.81 ? covale ? covale2 A SG CYS 33 A CYS 33 1_555 B CAC HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.801 ? covale ? covale3 A SG CYS 46 A CYS 46 1_555 C CAB HEC . A HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.79 ? covale ? covale4 A SG CYS 51 A CYS 51 1_555 C CAC HEC . A HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.795 ? covale ? covale5 A SG CYS 79 A CYS 79 1_555 D CAB HEC . A HEC 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.818 ? covale ? covale6 A SG CYS 82 A CYS 82 1_555 D CAC HEC . A HEC 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.843 ? covale ? covale7 A SG CYS 100 A CYS 100 1_555 E CAB HEC . A HEC 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.825 ? covale ? covale8 A SG CYS 105 A CYS 105 1_555 E CAC HEC . A HEC 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.813 ? metalc ? metalc1 A NE2 HIS 22 A HIS 22 1_555 B FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc2 A NE2 HIS 25 A HIS 25 1_555 D FE HEC . A HEC 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc3 A NE2 HIS 34 A HIS 34 1_555 B FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc4 A NE2 HIS 35 A HIS 35 1_555 C FE HEC . A HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? metalc ? metalc5 A NE2 HIS 52 A HIS 52 1_555 C FE HEC . A HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc6 A NE2 HIS 69 A HIS 69 1_555 E FE HEC . A HEC 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? metalc ? metalc7 A NE2 HIS 83 A HIS 83 1_555 D FE HEC . A HEC 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? metalc ? metalc8 A NE2 HIS 106 A HIS 106 1_555 E FE HEC . A HEC 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 113 n n FE NB HEC sing 114 n n FE NC HEC sing 115 n n FE ND HEC sing 116 n n CHA C1A HEC doub 117 n n CHA C4D HEC sing 118 n n CHA HHA HEC sing 119 n n CHB C4A HEC doub 120 n n CHB C1B HEC sing 121 n n CHB HHB HEC sing 122 n n CHC C4B HEC doub 123 n n CHC C1C HEC sing 124 n n CHC HHC HEC sing 125 n n CHD C4C HEC doub 126 n n CHD C1D HEC sing 127 n n CHD HHD HEC sing 128 n n NA C1A HEC sing 129 n y NA C4A HEC sing 130 n y C1A C2A HEC sing 131 n y C2A C3A HEC doub 132 n y C2A CAA HEC sing 133 n n C3A C4A HEC sing 134 n y C3A CMA HEC sing 135 n n CMA HMA1 HEC sing 136 n n CMA HMA2 HEC sing 137 n n CMA HMA3 HEC sing 138 n n CAA CBA HEC sing 139 n n CAA HAA1 HEC sing 140 n n CAA HAA2 HEC sing 141 n n CBA CGA HEC sing 142 n n CBA HBA1 HEC sing 143 n n CBA HBA2 HEC sing 144 n n CGA O1A HEC doub 145 n n CGA O2A HEC sing 146 n n O2A H2A HEC sing 147 n n NB C1B HEC sing 148 n y NB C4B HEC sing 149 n y C1B C2B HEC doub 150 n y C2B C3B HEC sing 151 n y C2B CMB HEC sing 152 n n C3B C4B HEC sing 153 n y C3B CAB HEC doub 154 e n CMB HMB1 HEC sing 155 n n CMB HMB2 HEC sing 156 n n CMB HMB3 HEC sing 157 n n CAB CBB HEC sing 158 n n CAB HAB HEC sing 159 n n CBB HBB1 HEC sing 160 n n CBB HBB2 HEC sing 161 n n CBB HBB3 HEC sing 162 n n NC C1C HEC sing 163 n y NC C4C HEC sing 164 n y C1C C2C HEC doub 165 n y C2C C3C HEC sing 166 n y C2C CMC HEC sing 167 n n C3C C4C HEC sing 168 n y C3C CAC HEC doub 169 e n CMC HMC1 HEC sing 170 n n CMC HMC2 HEC sing 171 n n CMC HMC3 HEC sing 172 n n CAC CBC HEC sing 173 n n CAC HAC HEC sing 174 n n CBC HBC1 HEC sing 175 n n CBC HBC2 HEC sing 176 n n CBC HBC3 HEC sing 177 n n ND C1D HEC sing 178 n y ND C4D HEC sing 179 n y C1D C2D HEC doub 180 n y C2D C3D HEC sing 181 n y C2D CMD HEC sing 182 n n C3D C4D HEC doub 183 n y C3D CAD HEC sing 184 n n CMD HMD1 HEC sing 185 n n CMD HMD2 HEC sing 186 n n CMD HMD3 HEC sing 187 n n CAD CBD HEC sing 188 n n CAD HAD1 HEC sing 189 n n CAD HAD2 HEC sing 190 n n CBD CGD HEC sing 191 n n CBD HBD1 HEC sing 192 n n CBD HBD2 HEC sing 193 n n CGD O1D HEC doub 194 n n CGD O2D HEC sing 195 n n O2D H2D HEC sing 196 n n # _atom_sites.entry_id 1GM4 _atom_sites.fract_transf_matrix[1][1] 0.01626 _atom_sites.fract_transf_matrix[1][2] 0.00939 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01878 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00946 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 201 201 HEC HEC . C 2 HEC A 1 202 202 HEC HEC . D 2 HEC A 1 203 203 HEC HEC . E 2 HEC A 1 204 204 HEC HEC . F 3 SO4 A 1 300 300 SO4 SO4 . G 4 HOH A 1 2001 2001 HOH HOH . G 4 HOH A 2 2002 2002 HOH HOH . G 4 HOH A 3 2003 2003 HOH HOH . G 4 HOH A 4 2004 2004 HOH HOH . G 4 HOH A 5 2005 2005 HOH HOH . G 4 HOH A 6 2006 2006 HOH HOH . G 4 HOH A 7 2007 2007 HOH HOH . G 4 HOH A 8 2008 2008 HOH HOH . G 4 HOH A 9 2009 2009 HOH HOH . G 4 HOH A 10 2010 2010 HOH HOH . G 4 HOH A 11 2011 2011 HOH HOH . G 4 HOH A 12 2012 2012 HOH HOH . G 4 HOH A 13 2013 2013 HOH HOH . G 4 HOH A 14 2014 2014 HOH HOH . G 4 HOH A 15 2015 2015 HOH HOH . G 4 HOH A 16 2016 2016 HOH HOH . G 4 HOH A 17 2017 2017 HOH HOH . G 4 HOH A 18 2018 2018 HOH HOH . G 4 HOH A 19 2019 2019 HOH HOH . G 4 HOH A 20 2020 2020 HOH HOH . G 4 HOH A 21 2021 2021 HOH HOH . G 4 HOH A 22 2022 2022 HOH HOH . G 4 HOH A 23 2023 2023 HOH HOH . G 4 HOH A 24 2024 2024 HOH HOH . G 4 HOH A 25 2025 2025 HOH HOH . G 4 HOH A 26 2026 2026 HOH HOH . G 4 HOH A 27 2027 2027 HOH HOH . G 4 HOH A 28 2028 2028 HOH HOH . G 4 HOH A 29 2029 2029 HOH HOH . G 4 HOH A 30 2030 2030 HOH HOH . G 4 HOH A 31 2031 2031 HOH HOH . G 4 HOH A 32 2032 2032 HOH HOH . G 4 HOH A 33 2033 2033 HOH HOH . G 4 HOH A 34 2034 2034 HOH HOH . G 4 HOH A 35 2035 2035 HOH HOH . G 4 HOH A 36 2036 2036 HOH HOH . G 4 HOH A 37 2037 2037 HOH HOH . G 4 HOH A 38 2038 2038 HOH HOH . G 4 HOH A 39 2039 2039 HOH HOH . G 4 HOH A 40 2040 2040 HOH HOH . G 4 HOH A 41 2041 2041 HOH HOH . G 4 HOH A 42 2042 2042 HOH HOH . G 4 HOH A 43 2043 2043 HOH HOH . G 4 HOH A 44 2044 2044 HOH HOH . G 4 HOH A 45 2045 2045 HOH HOH . G 4 HOH A 46 2046 2046 HOH HOH . G 4 HOH A 47 2047 2047 HOH HOH . G 4 HOH A 48 2048 2048 HOH HOH . G 4 HOH A 49 2049 2049 HOH HOH . G 4 HOH A 50 2050 2050 HOH HOH . G 4 HOH A 51 2051 2051 HOH HOH . G 4 HOH A 52 2052 2052 HOH HOH . G 4 HOH A 53 2053 2053 HOH HOH . G 4 HOH A 54 2054 2054 HOH HOH . G 4 HOH A 55 2055 2055 HOH HOH . G 4 HOH A 56 2056 2056 HOH HOH . G 4 HOH A 57 2057 2057 HOH HOH . G 4 HOH A 58 2058 2058 HOH HOH . G 4 HOH A 59 2059 2059 HOH HOH . G 4 HOH A 60 2060 2060 HOH HOH . G 4 HOH A 61 2061 2061 HOH HOH . G 4 HOH A 62 2062 2062 HOH HOH . G 4 HOH A 63 2063 2063 HOH HOH . G 4 HOH A 64 2064 2064 HOH HOH . G 4 HOH A 65 2065 2065 HOH HOH . G 4 HOH A 66 2066 2066 HOH HOH . G 4 HOH A 67 2067 2067 HOH HOH . G 4 HOH A 68 2068 2068 HOH HOH . G 4 HOH A 69 2069 2069 HOH HOH . G 4 HOH A 70 2070 2070 HOH HOH . G 4 HOH A 71 2071 2071 HOH HOH . G 4 HOH A 72 2072 2072 HOH HOH . G 4 HOH A 73 2073 2073 HOH HOH . G 4 HOH A 74 2074 2074 HOH HOH . G 4 HOH A 75 2075 2075 HOH HOH . G 4 HOH A 76 2076 2076 HOH HOH . G 4 HOH A 77 2077 2077 HOH HOH . G 4 HOH A 78 2078 2078 HOH HOH . G 4 HOH A 79 2079 2079 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . E 2 -14.682 36.99 19.056 1 22.01 ? FE HEC 204 A 1 HETATM 2 C CHA HEC . . . E 2 -13.689 36.233 15.949 1 22.77 ? CHA HEC 204 A 1 HETATM 3 C CHB HEC . . . E 2 -13.636 34.037 20.29 1 25.13 ? CHB HEC 204 A 1 HETATM 4 C CHC HEC . . . E 2 -16.112 37.721 22.179 1 22.23 ? CHC HEC 204 A 1 HETATM 5 C CHD HEC . . . E 2 -15.6 40.128 17.996 1 18.99 ? CHD HEC 204 A 1 HETATM 6 N NA HEC . . . E 2 -13.927 35.404 18.269 1 22.86 ? NA HEC 204 A 1 HETATM 7 C C1A HEC . . . E 2 -13.644 35.201 16.922 1 24.86 ? C1A HEC 204 A 1 HETATM 8 C C2A HEC . . . E 2 -13.108 33.845 16.758 1 25.14 ? C2A HEC 204 A 1 HETATM 9 C C3A HEC . . . E 2 -13.076 33.215 17.979 1 25.32 ? C3A HEC 204 A 1 HETATM 10 C C4A HEC . . . E 2 -13.561 34.218 18.913 1 23.74 ? C4A HEC 204 A 1 HETATM 11 C CMA HEC . . . E 2 -12.672 31.756 18.277 1 24.21 ? CMA HEC 204 A 1 HETATM 12 C CAA HEC . . . E 2 -12.617 33.27 15.452 1 23.32 ? CAA HEC 204 A 1 HETATM 13 C CBA HEC . . . E 2 -11.254 33.744 14.952 1 24.08 ? CBA HEC 204 A 1 HETATM 14 C CGA HEC . . . E 2 -11.022 33.376 13.498 1 25.49 ? CGA HEC 204 A 1 HETATM 15 O O1A HEC . . . E 2 -11.996 32.976 12.837 1 25.79 ? O1A HEC 204 A 1 HETATM 16 O O2A HEC . . . E 2 -9.883 33.491 13.013 1 25.22 ? O2A HEC 204 A 1 HETATM 17 N NB HEC . . . E 2 -14.776 36.141 20.862 1 21.92 ? NB HEC 204 A 1 HETATM 18 C C1B HEC . . . E 2 -14.19 34.935 21.204 1 23.82 ? C1B HEC 204 A 1 HETATM 19 C C2B HEC . . . E 2 -14.266 34.687 22.635 1 22.64 ? C2B HEC 204 A 1 HETATM 20 C C3B HEC . . . E 2 -14.995 35.683 23.171 1 23.35 ? C3B HEC 204 A 1 HETATM 21 C C4B HEC . . . E 2 -15.348 36.583 22.069 1 22.77 ? C4B HEC 204 A 1 HETATM 22 C CMB HEC . . . E 2 -13.479 33.626 23.374 1 18.79 ? CMB HEC 204 A 1 HETATM 23 C CAB HEC . . . E 2 -15.221 35.847 24.521 1 23.21 ? CAB HEC 204 A 1 HETATM 24 C CBB HEC . . . E 2 -14.281 36.668 25.244 1 23.81 ? CBB HEC 204 A 1 HETATM 25 N NC HEC . . . E 2 -15.652 38.569 19.889 1 19.45 ? NC HEC 204 A 1 HETATM 26 C C1C HEC . . . E 2 -16.25 38.647 21.128 1 22.48 ? C1C HEC 204 A 1 HETATM 27 C C2C HEC . . . E 2 -16.957 39.892 21.267 1 22.48 ? C2C HEC 204 A 1 HETATM 28 C C3C HEC . . . E 2 -16.773 40.625 20.14 1 21 ? C3C HEC 204 A 1 HETATM 29 C C4C HEC . . . E 2 -15.937 39.795 19.298 1 19.97 ? C4C HEC 204 A 1 HETATM 30 C CMC HEC . . . E 2 -17.813 40.186 22.476 1 22.62 ? CMC HEC 204 A 1 HETATM 31 C CAC HEC . . . E 2 -17.358 41.837 19.749 1 20.61 ? CAC HEC 204 A 1 HETATM 32 C CBC HEC . . . E 2 -17.1 43.045 20.501 1 19.55 ? CBC HEC 204 A 1 HETATM 33 N ND HEC . . . E 2 -14.548 38.002 17.392 1 18.85 ? ND HEC 204 A 1 HETATM 34 C C1D HEC . . . E 2 -14.905 39.316 17.137 1 21.19 ? C1D HEC 204 A 1 HETATM 35 C C2D HEC . . . E 2 -14.511 39.721 15.83 1 19.77 ? C2D HEC 204 A 1 HETATM 36 C C3D HEC . . . E 2 -13.962 38.669 15.228 1 21.67 ? C3D HEC 204 A 1 HETATM 37 C C4D HEC . . . E 2 -14.033 37.569 16.195 1 22.22 ? C4D HEC 204 A 1 HETATM 38 C CMD HEC . . . E 2 -14.77 41.065 15.197 1 21.76 ? CMD HEC 204 A 1 HETATM 39 C CAD HEC . . . E 2 -13.421 38.651 13.786 1 24.2 ? CAD HEC 204 A 1 HETATM 40 C CBD HEC . . . E 2 -11.961 39.064 13.642 1 24.7 ? CBD HEC 204 A 1 HETATM 41 C CGD HEC . . . E 2 -10.987 38.067 14.262 1 27.95 ? CGD HEC 204 A 1 HETATM 42 O O1D HEC . . . E 2 -10.282 37.382 13.493 1 29.05 ? O1D HEC 204 A 1 HETATM 43 O O2D HEC . . . E 2 -10.903 37.97 15.506 1 24.28 ? O2D HEC 204 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #