data_1GMN # _model_server_result.job_id '_T_NDnC-tJOrWgs8mec_RA' _model_server_result.datetime_utc '2024-11-16 10:28:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1gmn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 1GMN # _exptl.entry_id 1GMN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1GMN _cell.length_a 86.56 _cell.length_b 86.56 _cell.length_c 117.75 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GMN _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 SGN IDS C1 O1 . O4 HO4 . sing 2 ? 2 3 2 IDS SGN C1 O1 . O4 HO4 . sing 3 ? 2 4 3 SGN IDS C1 O1 . O4 HO4 . sing 4 ? 2 5 4 IDS SGN C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C IDS 1 C 1 IDS A 1208 IDS 2 n C SGN 2 C 2 SGN A 1209 SGN 2 n C IDS 3 C 3 IDS A 1210 IDS 2 n C SGN 4 C 4 SGN A 1211 SGN 2 n C IDS 5 C 5 IDS A 1212 IDS # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 47 A CYS 74 1_555 A SG CYS 57 A CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.964 ? disulf ? disulf2 A SG CYS 101 A CYS 128 1_555 A SG CYS 179 A CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? disulf ? disulf3 A SG CYS 122 A CYS 149 1_555 A SG CYS 162 A CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 150 A CYS 177 1_555 A SG CYS 174 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 B SG CYS 101 B CYS 128 1_555 B SG CYS 179 B CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.887 ? disulf ? disulf6 B SG CYS 122 B CYS 149 1_555 B SG CYS 162 B CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf7 B SG CYS 150 B CYS 177 1_555 B SG CYS 174 B CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 C O4 IDS . C IDS 1 1_555 C C1 SGN . C SGN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.402 ? covale ? covale2 C O4 SGN . C SGN 2 1_555 C C1 IDS . C IDS 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.396 ? covale ? covale3 C O4 IDS . C IDS 3 1_555 C C1 SGN . C SGN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.411 ? covale ? covale4 C O4 SGN . C SGN 4 1_555 C C1 IDS . C IDS 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.406 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 83 n n N1 C6 EPE sing 84 n n N1 C9 EPE sing 85 n n C2 C3 EPE sing 86 n n C2 H21 EPE sing 87 n n C2 H22 EPE sing 88 n n C3 N4 EPE sing 89 n n C3 H31 EPE sing 90 n n C3 H32 EPE sing 91 n n N4 C5 EPE sing 92 n n N4 C7 EPE sing 93 n n C5 C6 EPE sing 94 n n C5 H51 EPE sing 95 n n C5 H52 EPE sing 96 n n C6 H61 EPE sing 97 n n C6 H62 EPE sing 98 n n C7 C8 EPE sing 99 n n C7 H71 EPE sing 100 n n C7 H72 EPE sing 101 n n C8 O8 EPE sing 102 n n C8 H81 EPE sing 103 n n C8 H82 EPE sing 104 n n O8 HO8 EPE sing 105 n n C9 C10 EPE sing 106 n n C9 H91 EPE sing 107 n n C9 H92 EPE sing 108 n n C10 S EPE sing 109 n n C10 H101 EPE sing 110 n n C10 H102 EPE sing 111 n n S O1S EPE doub 112 n n S O2S EPE doub 113 n n S O3S EPE sing 114 n n O3S HOS3 EPE sing 115 n n # _atom_sites.entry_id 1GMN _atom_sites.fract_transf_matrix[1][1] 0.011553 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011553 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008492 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 EPE A 1 306 1213 EPE EPE . E 3 EPE B 1 301 1210 EPE EPE . F 4 HOH A 1 401 2032 HOH HOH . F 4 HOH A 2 402 2025 HOH HOH . F 4 HOH A 3 403 2002 HOH HOH . F 4 HOH A 4 404 2016 HOH HOH . F 4 HOH A 5 405 2005 HOH HOH . F 4 HOH A 6 406 2014 HOH HOH . F 4 HOH A 7 407 2031 HOH HOH . F 4 HOH A 8 408 2024 HOH HOH . F 4 HOH A 9 409 2030 HOH HOH . F 4 HOH A 10 410 2012 HOH HOH . F 4 HOH A 11 411 2026 HOH HOH . F 4 HOH A 12 412 2021 HOH HOH . F 4 HOH A 13 413 2004 HOH HOH . F 4 HOH A 14 414 2013 HOH HOH . F 4 HOH A 15 415 2003 HOH HOH . F 4 HOH A 16 416 2022 HOH HOH . F 4 HOH A 17 417 2006 HOH HOH . F 4 HOH A 18 418 2028 HOH HOH . F 4 HOH A 19 419 2015 HOH HOH . F 4 HOH A 20 420 2001 HOH HOH . F 4 HOH A 21 421 2017 HOH HOH . F 4 HOH A 22 422 2023 HOH HOH . F 4 HOH A 23 423 2027 HOH HOH . F 4 HOH A 24 424 2020 HOH HOH . F 4 HOH A 25 425 2011 HOH HOH . F 4 HOH A 26 426 2019 HOH HOH . F 4 HOH A 27 427 2029 HOH HOH . F 4 HOH A 28 428 2007 HOH HOH . F 4 HOH A 29 429 2018 HOH HOH . F 4 HOH A 30 430 2009 HOH HOH . F 4 HOH A 31 431 2010 HOH HOH . F 4 HOH A 32 432 2008 HOH HOH . G 4 HOH B 1 401 2004 HOH HOH . G 4 HOH B 2 402 2027 HOH HOH . G 4 HOH B 3 403 2031 HOH HOH . G 4 HOH B 4 404 2002 HOH HOH . G 4 HOH B 5 405 2007 HOH HOH . G 4 HOH B 6 406 2011 HOH HOH . G 4 HOH B 7 407 2035 HOH HOH . G 4 HOH B 8 408 2014 HOH HOH . G 4 HOH B 9 409 2018 HOH HOH . G 4 HOH B 10 410 2019 HOH HOH . G 4 HOH B 11 411 2025 HOH HOH . G 4 HOH B 12 412 2024 HOH HOH . G 4 HOH B 13 413 2013 HOH HOH . G 4 HOH B 14 414 2021 HOH HOH . G 4 HOH B 15 415 2015 HOH HOH . G 4 HOH B 16 416 2029 HOH HOH . G 4 HOH B 17 417 2009 HOH HOH . G 4 HOH B 18 418 2033 HOH HOH . G 4 HOH B 19 419 2008 HOH HOH . G 4 HOH B 20 420 2012 HOH HOH . G 4 HOH B 21 421 2026 HOH HOH . G 4 HOH B 22 422 2022 HOH HOH . G 4 HOH B 23 423 2005 HOH HOH . G 4 HOH B 24 424 2020 HOH HOH . G 4 HOH B 25 425 2030 HOH HOH . G 4 HOH B 26 426 2028 HOH HOH . G 4 HOH B 27 427 2023 HOH HOH . G 4 HOH B 28 428 2006 HOH HOH . G 4 HOH B 29 429 2016 HOH HOH . G 4 HOH B 30 430 2032 HOH HOH . G 4 HOH B 31 431 2017 HOH HOH . G 4 HOH B 32 432 2010 HOH HOH . G 4 HOH B 33 433 2034 HOH HOH . G 4 HOH B 34 434 2001 HOH HOH . G 4 HOH B 35 435 2003 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . E 3 134.538 41.982 62.943 1 46.13 ? N1 EPE 301 B 1 HETATM 2 C C2 EPE . . . E 3 135.784 41.44 62.295 1 47.83 ? C2 EPE 301 B 1 HETATM 3 C C3 EPE . . . E 3 136.865 41.317 63.359 1 48.45 ? C3 EPE 301 B 1 HETATM 4 N N4 EPE . . . E 3 137.205 42.654 63.904 1 49.18 ? N4 EPE 301 B 1 HETATM 5 C C5 EPE . . . E 3 135.984 43.244 64.557 1 49.34 ? C5 EPE 301 B 1 HETATM 6 C C6 EPE . . . E 3 134.825 43.36 63.534 1 47.72 ? C6 EPE 301 B 1 HETATM 7 C C7 EPE . . . E 3 138.273 42.594 64.948 1 50.92 ? C7 EPE 301 B 1 HETATM 8 C C8 EPE . . . E 3 139.603 42.029 64.432 1 50.5 ? C8 EPE 301 B 1 HETATM 9 O O8 EPE . . . E 3 139.865 40.684 64.815 1 50.49 ? O8 EPE 301 B 1 HETATM 10 C C9 EPE . . . E 3 133.43 42.141 61.938 1 43.46 ? C9 EPE 301 B 1 HETATM 11 C C10 EPE . . . E 3 132.246 41.31 62.405 1 38.56 ? C10 EPE 301 B 1 HETATM 12 S S EPE . . . E 3 130.837 41.45 61.297 1 32.09 ? S EPE 301 B 1 HETATM 13 O O1S EPE . . . E 3 129.886 40.638 61.991 1 30.98 ? O1S EPE 301 B 1 HETATM 14 O O2S EPE . . . E 3 131.137 40.896 59.982 1 30.58 ? O2S EPE 301 B 1 HETATM 15 O O3S EPE . . . E 3 130.523 42.848 61.26 1 32.62 ? O3S EPE 301 B 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 37 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 506 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 15 #