data_1GNJ # _model_server_result.job_id FXbL-aqcJacNZsFhbPNitw _model_server_result.datetime_utc '2024-12-26 22:09:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1gnj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1008}' # _entry.id 1GNJ # _exptl.entry_id 1GNJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 304.467 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ARACHIDONIC ACID' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.75 _cell.angle_gamma 90 _cell.entry_id 1GNJ _cell.length_a 190.219 _cell.length_b 38.972 _cell.length_c 96.236 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GNJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 53 A CYS 53 1_555 A SG CYS 62 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 75 A CYS 75 1_555 A SG CYS 91 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf3 A SG CYS 90 A CYS 90 1_555 A SG CYS 101 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 124 A CYS 124 1_555 A SG CYS 169 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 A SG CYS 168 A CYS 168 1_555 A SG CYS 177 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf6 A SG CYS 200 A CYS 200 1_555 A SG CYS 246 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf7 A SG CYS 245 A CYS 245 1_555 A SG CYS 253 A CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf8 A SG CYS 265 A CYS 265 1_555 A SG CYS 279 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf9 A SG CYS 278 A CYS 278 1_555 A SG CYS 289 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf10 A SG CYS 316 A CYS 316 1_555 A SG CYS 361 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf11 A SG CYS 360 A CYS 360 1_555 A SG CYS 369 A CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf12 A SG CYS 392 A CYS 392 1_555 A SG CYS 438 A CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf13 A SG CYS 437 A CYS 437 1_555 A SG CYS 448 A CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf14 A SG CYS 461 A CYS 461 1_555 A SG CYS 477 A CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf15 A SG CYS 476 A CYS 476 1_555 A SG CYS 487 A CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf16 A SG CYS 514 A CYS 514 1_555 A SG CYS 559 A CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf17 A SG CYS 558 A CYS 558 1_555 A SG CYS 567 A CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? # _chem_comp.formula 'C20 H32 O2' _chem_comp.formula_weight 304.467 _chem_comp.id ACD _chem_comp.mon_nstd_flag . _chem_comp.name 'ARACHIDONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 ACD sing 1 n n C1 O1 ACD doub 2 n n C1 O2 ACD sing 3 n n C2 C3 ACD sing 4 n n C2 H21 ACD sing 5 n n C2 H22 ACD sing 6 n n C3 C4 ACD sing 7 n n C3 H31 ACD sing 8 n n C3 H32 ACD sing 9 n n C4 C5 ACD sing 10 n n C4 H41 ACD sing 11 n n C4 H42 ACD sing 12 n n C5 C6 ACD doub 13 z n C5 H5 ACD sing 14 n n C6 C7 ACD sing 15 n n C6 H6 ACD sing 16 n n C7 C8 ACD sing 17 n n C7 H71 ACD sing 18 n n C7 H72 ACD sing 19 n n C8 C9 ACD doub 20 z n C8 H8 ACD sing 21 n n C9 C10 ACD sing 22 n n C9 H9 ACD sing 23 n n C10 C11 ACD sing 24 n n C10 H101 ACD sing 25 n n C10 H102 ACD sing 26 n n C11 C12 ACD doub 27 z n C11 H11 ACD sing 28 n n C12 C13 ACD sing 29 n n C12 H12 ACD sing 30 n n C13 C14 ACD sing 31 n n C13 H131 ACD sing 32 n n C13 H132 ACD sing 33 n n C14 C15 ACD doub 34 z n C14 H14 ACD sing 35 n n C15 C16 ACD sing 36 n n C15 H15 ACD sing 37 n n C16 C17 ACD sing 38 n n C16 H161 ACD sing 39 n n C16 H162 ACD sing 40 n n C17 C18 ACD sing 41 n n C17 H171 ACD sing 42 n n C17 H172 ACD sing 43 n n C18 C19 ACD sing 44 n n C18 H181 ACD sing 45 n n C18 H182 ACD sing 46 n n C19 C20 ACD sing 47 n n C19 H191 ACD sing 48 n n C19 H192 ACD sing 49 n n C20 H201 ACD sing 50 n n C20 H202 ACD sing 51 n n C20 H203 ACD sing 52 n n O2 HO2 ACD sing 53 n n # _atom_sites.entry_id 1GNJ _atom_sites.fract_transf_matrix[1][1] 0.005257 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001483 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025659 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010796 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACD A 1 1001 1001 ACD ACD . C 2 ACD A 1 1002 1002 ACD ACD . D 2 ACD A 1 1003 1003 ACD ACD . E 2 ACD A 1 1004 1004 ACD ACD . F 2 ACD A 1 1005 1005 ACD ACD . G 2 ACD A 1 1006 1006 ACD ACD . H 2 ACD A 1 1007 1007 ACD ACD . I 2 ACD A 1 1008 1008 ACD ACD . J 3 HOH A 1 2001 2001 HOH HOH . J 3 HOH A 2 2002 2002 HOH HOH . J 3 HOH A 3 2003 2003 HOH HOH . J 3 HOH A 4 2004 2004 HOH HOH . J 3 HOH A 5 2005 2005 HOH HOH . J 3 HOH A 6 2006 2006 HOH HOH . J 3 HOH A 7 2007 2007 HOH HOH . J 3 HOH A 8 2008 2008 HOH HOH . J 3 HOH A 9 2009 2009 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ACD . . . I 2 14.263 -5.339 29.19 1 95.38 ? C1 ACD 1008 A 1 HETATM 2 C C2 ACD . . . I 2 15.439 -6.182 28.761 1 96.56 ? C2 ACD 1008 A 1 HETATM 3 C C3 ACD . . . I 2 16.722 -5.398 28.537 1 97 ? C3 ACD 1008 A 1 HETATM 4 O O1 ACD . . . I 2 13.126 -5.574 28.714 1 94.79 ? O1 ACD 1008 A 1 HETATM 5 O O2 ACD . . . I 2 14.467 -4.426 30.021 1 94.73 ? O2 ACD 1008 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #