data_1GNQ
#
_model_server_result.job_id            IQfciXeynupIF1W6_InFqQ 
_model_server_result.datetime_utc      '2024-11-22 08:37:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1gnq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":167}' 
#
_entry.id    1GNQ 
#
_exptl.entry_id    1GNQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              672.327 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE 5'-TRIPHOSPHATE P3-[1-(2-NITROPHENYL)ETHYL ESTER]" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1GNQ 
_cell.length_a            40.8 
_cell.length_b            40.8 
_cell.length_c            158.2 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1GNQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 17 A SER 17 1_555 B MG MG . A MG 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? 
metalc ? metalc2 A OG1 THR 35 A THR 35 1_555 B MG MG . A MG 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.903 ? 
metalc ? metalc3 A OD2 ASP 57 A ASP 57 1_555 B MG MG . A MG 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.033 ? 
metalc ? metalc4 C O1G CAG . A CAG 167 1_555 B MG MG . A MG 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? 
metalc ? metalc5 C O2B CAG . A CAG 167 1_555 B MG MG . A MG 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.948 ? 
metalc ? metalc6 B MG MG . A MG 168 1_555 D O HOH . A HOH 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? 
metalc ? metalc7 B MG MG . A MG 168 1_555 D O HOH . A HOH 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? 
#
_chem_comp.formula           'C18 H23 N6 O16 P3' 
_chem_comp.formula_weight    672.327 
_chem_comp.id                CAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "GUANOSINE 5'-TRIPHOSPHATE P3-[1-(2-NITROPHENYL)ETHYL ESTER]" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G CAG doub 70 n n 
PG O2G CAG sing 71 n n 
PG O3G CAG sing 72 n n 
PG O3B CAG sing 73 n n 
O2G HOG2 CAG sing 74 n n 
O3G C' CAG sing 75 n n 
PB O1B CAG doub 76 n n 
PB O2B CAG sing 77 n n 
PB O3B CAG sing 78 n n 
PB O3A CAG sing 79 n n 
O2B HOB2 CAG sing 80 n n 
PA O1A CAG doub 81 n n 
PA O2A CAG sing 82 n n 
PA O3A CAG sing 83 n n 
PA O5' CAG sing 84 n n 
O2A HOA2 CAG sing 85 n n 
O5' C5B CAG sing 86 n n 
C5B C4B CAG sing 87 n n 
C5B "H5'1" CAG sing 88 n n 
C5B "H5'2" CAG sing 89 n n 
C4B O4' CAG sing 90 n n 
C4B C3B CAG sing 91 n n 
C4B H4B CAG sing 92 n n 
O4' C1B CAG sing 93 n n 
C3B O3' CAG sing 94 n n 
C3B C2B CAG sing 95 n n 
C3B H3B CAG sing 96 n n 
O3' HO3 CAG sing 97 n n 
C2B O2' CAG sing 98 n n 
C2B C1B CAG sing 99 n n 
C2B H2' CAG sing 100 n n 
O2' HO2 CAG sing 101 n n 
C1B N9 CAG sing 102 n n 
C1B H1' CAG sing 103 n n 
N9 C8 CAG sing 104 n y 
N9 C4 CAG sing 105 n y 
C8 N7 CAG doub 106 n y 
C8 H8 CAG sing 107 n n 
N7 C5 CAG sing 108 n y 
C5 C6 CAG sing 109 n y 
C5 C4 CAG doub 110 n y 
C6 O6 CAG doub 111 n n 
C6 N1 CAG sing 112 n y 
N1 C2 CAG sing 113 n y 
N1 H1 CAG sing 114 n n 
C2 N2 CAG sing 115 n n 
C2 N3 CAG doub 116 n y 
N2 H21 CAG sing 117 n n 
N2 H22 CAG sing 118 n n 
N3 C4 CAG sing 119 n y 
C' CM' CAG sing 120 n n 
C' C1' CAG sing 121 n n 
C' H' CAG sing 122 n n 
CM' HCM1 CAG sing 123 n n 
CM' HCM2 CAG sing 124 n n 
CM' HCM3 CAG sing 125 n n 
C1' C2' CAG doub 126 n y 
C1' C6' CAG sing 127 n y 
C2' N2' CAG sing 128 n n 
C2' C3' CAG sing 129 n y 
N2' "O'L" CAG sing 130 n n 
N2' "O'M" CAG doub 131 n n 
C3' C4' CAG doub 132 n y 
C3' H3' CAG sing 133 n n 
C4' C5' CAG sing 134 n y 
C4' H4' CAG sing 135 n n 
C5' C6' CAG doub 136 n y 
C5' H5' CAG sing 137 n n 
C6' H6' CAG sing 138 n n 
#
_atom_sites.entry_id                     1GNQ 
_atom_sites.fract_transf_matrix[1][1]    0.02451 
_atom_sites.fract_transf_matrix[1][2]    0.014151 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.028301 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006321 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 168 168 MG MG . 
C 3 CAG A 1 167 167 CAG CAG . 
D 4 HOH A 1 169 169 HOH HOH . 
D 4 HOH A 2 170 170 HOH HOH . 
D 4 HOH A 3 172 172 HOH HOH . 
D 4 HOH A 4 173 173 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG CAG . . . C 3 5.455 32.387 22.119 1 31.6 ? PG CAG 167 A 1 
HETATM 2 O O1G CAG . . . C 3 4.751 33.15 21.055 1 11.95 ? O1G CAG 167 A 1 
HETATM 3 O O2G CAG . . . C 3 4.689 31.341 22.833 1 5 ? O2G CAG 167 A 1 
HETATM 4 O O3G CAG . . . C 3 6.124 33.49 23.132 1 14.56 ? O3G CAG 167 A 1 
HETATM 5 P PB CAG . . . C 3 7.513 32.33 20.276 1 9.29 ? PB CAG 167 A 1 
HETATM 6 O O1B CAG . . . C 3 8.18 31.208 19.572 1 18.19 ? O1B CAG 167 A 1 
HETATM 7 O O2B CAG . . . C 3 6.55 33.183 19.53 1 26.06 ? O2B CAG 167 A 1 
HETATM 8 O O3B CAG . . . C 3 6.77 31.638 21.541 1 7.01 ? O3B CAG 167 A 1 
HETATM 9 P PA CAG . . . C 3 9.32 34.307 19.768 1 5.33 ? PA CAG 167 A 1 
HETATM 10 O O1A CAG . . . C 3 9.626 33.559 18.534 1 5 ? O1A CAG 167 A 1 
HETATM 11 O O2A CAG . . . C 3 8.617 35.603 19.689 1 19.02 ? O2A CAG 167 A 1 
HETATM 12 O O3A CAG . . . C 3 8.653 33.308 20.844 1 16.13 ? O3A CAG 167 A 1 
HETATM 13 O O5' CAG . . . C 3 10.681 34.534 20.562 1 22.2 ? O5' CAG 167 A 1 
HETATM 14 C C5B CAG . . . C 3 11.775 33.671 20.295 1 11.4 ? C5B CAG 167 A 1 
HETATM 15 C C4B CAG . . . C 3 12.836 33.92 21.343 1 13.02 ? C4B CAG 167 A 1 
HETATM 16 O O4' CAG . . . C 3 14.12 33.486 20.885 1 20.77 ? O4' CAG 167 A 1 
HETATM 17 C C3B CAG . . . C 3 12.965 35.413 21.52 1 10.39 ? C3B CAG 167 A 1 
HETATM 18 O O3' CAG . . . C 3 13.597 35.656 22.78 1 24.42 ? O3' CAG 167 A 1 
HETATM 19 C C2B CAG . . . C 3 13.853 35.788 20.343 1 15.18 ? C2B CAG 167 A 1 
HETATM 20 O O2' CAG . . . C 3 14.638 36.947 20.614 1 24.2 ? O2' CAG 167 A 1 
HETATM 21 C C1B CAG . . . C 3 14.72 34.553 20.133 1 22.11 ? C1B CAG 167 A 1 
HETATM 22 N N9 CAG . . . C 3 14.737 34.131 18.722 1 9.08 ? N9 CAG 167 A 1 
HETATM 23 C C8 CAG . . . C 3 13.71 33.554 18.016 1 5.12 ? C8 CAG 167 A 1 
HETATM 24 N N7 CAG . . . C 3 14.101 32.605 17.206 1 6.75 ? N7 CAG 167 A 1 
HETATM 25 C C5 CAG . . . C 3 15.493 32.707 17.223 1 7.63 ? C5 CAG 167 A 1 
HETATM 26 C C6 CAG . . . C 3 16.483 32.038 16.429 1 11.5 ? C6 CAG 167 A 1 
HETATM 27 O O6 CAG . . . C 3 16.367 31.449 15.345 1 12 ? O6 CAG 167 A 1 
HETATM 28 N N1 CAG . . . C 3 17.76 32.374 16.854 1 7.85 ? N1 CAG 167 A 1 
HETATM 29 C C2 CAG . . . C 3 18.056 33.351 17.78 1 9.1 ? C2 CAG 167 A 1 
HETATM 30 N N2 CAG . . . C 3 19.353 33.555 18.043 1 12.71 ? N2 CAG 167 A 1 
HETATM 31 N N3 CAG . . . C 3 17.123 34.077 18.412 1 7.25 ? N3 CAG 167 A 1 
HETATM 32 C C4 CAG . . . C 3 15.874 33.685 18.102 1 10.94 ? C4 CAG 167 A 1 
HETATM 33 C C' CAG . . . C 3 6.753 33.327 24.43 1 7.48 ? C' CAG 167 A 1 
HETATM 34 C CM' CAG . . . C 3 6.687 31.861 24.824 1 15.98 ? CM' CAG 167 A 1 
HETATM 35 C C1' CAG . . . C 3 8.2 33.778 24.561 1 6.37 ? C1' CAG 167 A 1 
HETATM 36 C C2' CAG . . . C 3 8.742 34.842 23.895 1 19.62 ? C2' CAG 167 A 1 
HETATM 37 N N2' CAG . . . C 3 8.036 35.729 23.082 1 23.82 ? N2' CAG 167 A 1 
HETATM 38 O "O'L" CAG . . . C 3 6.628 35.835 23.116 1 27.8 ? "O'L" CAG 167 A 1 
HETATM 39 O "O'M" CAG . . . C 3 8.794 36.591 22.265 1 23.12 ? "O'M" CAG 167 A 1 
HETATM 40 C C3' CAG . . . C 3 10.049 35.153 24.042 1 11.37 ? C3' CAG 167 A 1 
HETATM 41 C C4' CAG . . . C 3 10.824 34.502 24.935 1 27.85 ? C4' CAG 167 A 1 
HETATM 42 C C5' CAG . . . C 3 10.282 33.523 25.683 1 6.86 ? C5' CAG 167 A 1 
HETATM 43 C C6' CAG . . . C 3 8.99 33.176 25.494 1 8.91 ? C6' CAG 167 A 1 
#
_model_server_stats.io_time_ms              83 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           247 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           43 
#