data_1GNW # _model_server_result.job_id 3_cL68yWytB3S0FmAMsWxw _model_server_result.datetime_utc '2024-11-23 19:50:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1gnw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":213}' # _entry.id 1GNW # _exptl.entry_id 1GNW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 392.491 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-HEXYLGLUTATHIONE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1GNW _cell.length_a 113.3 _cell.length_b 113.3 _cell.length_c 69.96 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GNW _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C16 H30 N3 O6 S 1' _chem_comp.formula_weight 392.491 _chem_comp.id GTX _chem_comp.mon_nstd_flag . _chem_comp.name S-HEXYLGLUTATHIONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 CA1 GTX sing 116 n n N1 HN11 GTX sing 117 n n N1 HN12 GTX sing 118 n n N1 HN13 GTX sing 119 n n CA1 C1 GTX sing 120 n n CA1 CB1 GTX sing 121 n n CA1 HA1 GTX sing 122 n n C1 O11 GTX doub 123 n n C1 O12 GTX sing 124 n n O12 HO2 GTX sing 125 n n CB1 CG1 GTX sing 126 n n CB1 HB11 GTX sing 127 n n CB1 HB12 GTX sing 128 n n CG1 CD1 GTX sing 129 n n CG1 HG11 GTX sing 130 n n CG1 HG12 GTX sing 131 n n CD1 OE1 GTX doub 132 n n CD1 N2 GTX sing 133 n n N2 CA2 GTX sing 134 n n N2 HN2 GTX sing 135 n n CA2 C2 GTX sing 136 n n CA2 CB2 GTX sing 137 n n CA2 HA2 GTX sing 138 n n C2 O2 GTX doub 139 n n C2 N3 GTX sing 140 n n CB2 SG2 GTX sing 141 n n CB2 HB21 GTX sing 142 n n CB2 HB22 GTX sing 143 n n SG2 C1S GTX sing 144 n n C1S C2S GTX sing 145 n n C1S HS11 GTX sing 146 n n C1S HS12 GTX sing 147 n n C2S C3S GTX sing 148 n n C2S HS21 GTX sing 149 n n C2S HS22 GTX sing 150 n n C3S C4S GTX sing 151 n n C3S HS31 GTX sing 152 n n C3S HS32 GTX sing 153 n n C4S C5S GTX sing 154 n n C4S HS41 GTX sing 155 n n C4S HS42 GTX sing 156 n n C5S C6S GTX sing 157 n n C5S HS51 GTX sing 158 n n C5S HS52 GTX sing 159 n n C6S HS61 GTX sing 160 n n C6S HS62 GTX sing 161 n n C6S HS63 GTX sing 162 n n N3 CA3 GTX sing 163 n n N3 HN3 GTX sing 164 n n CA3 C3 GTX sing 165 n n CA3 HA31 GTX sing 166 n n CA3 HA32 GTX sing 167 n n C3 O31 GTX doub 168 n n C3 O32 GTX sing 169 n n O32 HO3 GTX sing 170 n n # _atom_sites.entry_id 1GNW _atom_sites.fract_transf_matrix[1][1] 0.008826 _atom_sites.fract_transf_matrix[1][2] 0.005096 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010192 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014294 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GTX A 1 212 1 GTX GTX . D 2 GTX A 1 213 2 GTX GTX . E 2 GTX B 1 212 1 GTX GTX . F 2 GTX B 1 213 2 GTX GTX . G 3 HOH A 1 214 1 HOH HOH . G 3 HOH A 2 215 2 HOH HOH . G 3 HOH A 3 216 3 HOH HOH . G 3 HOH A 4 217 5 HOH HOH . G 3 HOH A 5 218 6 HOH HOH . G 3 HOH A 6 219 7 HOH HOH . G 3 HOH A 7 220 8 HOH HOH . G 3 HOH A 8 221 9 HOH HOH . G 3 HOH A 9 222 10 HOH HOH . G 3 HOH A 10 223 11 HOH HOH . G 3 HOH A 11 224 12 HOH HOH . G 3 HOH A 12 225 13 HOH HOH . G 3 HOH A 13 226 14 HOH HOH . G 3 HOH A 14 227 15 HOH HOH . G 3 HOH A 15 228 16 HOH HOH . G 3 HOH A 16 229 17 HOH HOH . G 3 HOH A 17 230 18 HOH HOH . G 3 HOH A 18 231 19 HOH HOH . G 3 HOH A 19 232 20 HOH HOH . G 3 HOH A 20 233 21 HOH HOH . G 3 HOH A 21 234 22 HOH HOH . G 3 HOH A 22 235 23 HOH HOH . G 3 HOH A 23 236 24 HOH HOH . G 3 HOH A 24 237 25 HOH HOH . G 3 HOH A 25 238 26 HOH HOH . G 3 HOH A 26 239 27 HOH HOH . G 3 HOH A 27 240 28 HOH HOH . G 3 HOH A 28 241 30 HOH HOH . G 3 HOH A 29 242 31 HOH HOH . G 3 HOH A 30 243 32 HOH HOH . G 3 HOH A 31 244 33 HOH HOH . G 3 HOH A 32 245 34 HOH HOH . G 3 HOH A 33 246 35 HOH HOH . G 3 HOH A 34 247 36 HOH HOH . G 3 HOH A 35 248 37 HOH HOH . G 3 HOH A 36 249 38 HOH HOH . G 3 HOH A 37 250 39 HOH HOH . G 3 HOH A 38 251 40 HOH HOH . G 3 HOH A 39 252 41 HOH HOH . G 3 HOH A 40 253 42 HOH HOH . G 3 HOH A 41 254 45 HOH HOH . G 3 HOH A 42 255 46 HOH HOH . G 3 HOH A 43 256 47 HOH HOH . G 3 HOH A 44 257 48 HOH HOH . G 3 HOH A 45 258 49 HOH HOH . G 3 HOH A 46 259 50 HOH HOH . G 3 HOH A 47 260 51 HOH HOH . G 3 HOH A 48 261 52 HOH HOH . G 3 HOH A 49 262 53 HOH HOH . G 3 HOH A 50 263 54 HOH HOH . G 3 HOH A 51 264 55 HOH HOH . G 3 HOH A 52 265 56 HOH HOH . G 3 HOH A 53 266 57 HOH HOH . G 3 HOH A 54 267 58 HOH HOH . G 3 HOH A 55 268 59 HOH HOH . G 3 HOH A 56 269 60 HOH HOH . G 3 HOH A 57 270 61 HOH HOH . G 3 HOH A 58 271 62 HOH HOH . G 3 HOH A 59 272 63 HOH HOH . G 3 HOH A 60 273 64 HOH HOH . G 3 HOH A 61 274 65 HOH HOH . G 3 HOH A 62 275 66 HOH HOH . G 3 HOH A 63 276 67 HOH HOH . G 3 HOH A 64 277 68 HOH HOH . G 3 HOH A 65 278 69 HOH HOH . G 3 HOH A 66 279 70 HOH HOH . G 3 HOH A 67 280 71 HOH HOH . G 3 HOH A 68 281 72 HOH HOH . G 3 HOH A 69 282 84 HOH HOH . G 3 HOH A 70 283 91 HOH HOH . G 3 HOH A 71 284 97 HOH HOH . G 3 HOH A 72 285 101 HOH HOH . G 3 HOH A 73 286 112 HOH HOH . G 3 HOH A 74 287 115 HOH HOH . G 3 HOH A 75 288 116 HOH HOH . G 3 HOH A 76 289 145 HOH HOH . G 3 HOH A 77 290 146 HOH HOH . G 3 HOH A 78 291 147 HOH HOH . G 3 HOH A 79 292 148 HOH HOH . G 3 HOH A 80 293 149 HOH HOH . G 3 HOH A 81 294 150 HOH HOH . G 3 HOH A 82 295 151 HOH HOH . G 3 HOH A 83 296 152 HOH HOH . G 3 HOH A 84 297 153 HOH HOH . G 3 HOH A 85 298 154 HOH HOH . G 3 HOH A 86 299 157 HOH HOH . G 3 HOH A 87 300 158 HOH HOH . G 3 HOH A 88 301 161 HOH HOH . G 3 HOH A 89 302 162 HOH HOH . G 3 HOH A 90 303 163 HOH HOH . G 3 HOH A 91 304 164 HOH HOH . G 3 HOH A 92 305 165 HOH HOH . G 3 HOH A 93 306 166 HOH HOH . G 3 HOH A 94 307 167 HOH HOH . G 3 HOH A 95 308 168 HOH HOH . G 3 HOH A 96 309 169 HOH HOH . G 3 HOH A 97 310 170 HOH HOH . G 3 HOH A 98 311 171 HOH HOH . G 3 HOH A 99 312 172 HOH HOH . G 3 HOH A 100 313 173 HOH HOH . G 3 HOH A 101 314 174 HOH HOH . G 3 HOH A 102 315 175 HOH HOH . G 3 HOH A 103 316 176 HOH HOH . G 3 HOH A 104 317 177 HOH HOH . G 3 HOH A 105 318 178 HOH HOH . G 3 HOH A 106 319 179 HOH HOH . G 3 HOH A 107 320 180 HOH HOH . G 3 HOH A 108 321 181 HOH HOH . G 3 HOH A 109 322 182 HOH HOH . G 3 HOH A 110 323 183 HOH HOH . G 3 HOH A 111 324 184 HOH HOH . G 3 HOH A 112 325 185 HOH HOH . H 3 HOH B 1 214 4 HOH HOH . H 3 HOH B 2 215 29 HOH HOH . H 3 HOH B 3 216 43 HOH HOH . H 3 HOH B 4 217 44 HOH HOH . H 3 HOH B 5 218 73 HOH HOH . H 3 HOH B 6 219 74 HOH HOH . H 3 HOH B 7 220 75 HOH HOH . H 3 HOH B 8 221 76 HOH HOH . H 3 HOH B 9 222 77 HOH HOH . H 3 HOH B 10 223 78 HOH HOH . H 3 HOH B 11 224 79 HOH HOH . H 3 HOH B 12 225 80 HOH HOH . H 3 HOH B 13 226 81 HOH HOH . H 3 HOH B 14 227 82 HOH HOH . H 3 HOH B 15 228 83 HOH HOH . H 3 HOH B 16 229 85 HOH HOH . H 3 HOH B 17 230 86 HOH HOH . H 3 HOH B 18 231 87 HOH HOH . H 3 HOH B 19 232 88 HOH HOH . H 3 HOH B 20 233 89 HOH HOH . H 3 HOH B 21 234 90 HOH HOH . H 3 HOH B 22 235 92 HOH HOH . H 3 HOH B 23 236 93 HOH HOH . H 3 HOH B 24 237 94 HOH HOH . H 3 HOH B 25 238 95 HOH HOH . H 3 HOH B 26 239 96 HOH HOH . H 3 HOH B 27 240 98 HOH HOH . H 3 HOH B 28 241 99 HOH HOH . H 3 HOH B 29 242 100 HOH HOH . H 3 HOH B 30 243 102 HOH HOH . H 3 HOH B 31 244 103 HOH HOH . H 3 HOH B 32 245 104 HOH HOH . H 3 HOH B 33 246 105 HOH HOH . H 3 HOH B 34 247 106 HOH HOH . H 3 HOH B 35 248 107 HOH HOH . H 3 HOH B 36 249 108 HOH HOH . H 3 HOH B 37 250 109 HOH HOH . H 3 HOH B 38 251 110 HOH HOH . H 3 HOH B 39 252 111 HOH HOH . H 3 HOH B 40 253 113 HOH HOH . H 3 HOH B 41 254 114 HOH HOH . H 3 HOH B 42 255 117 HOH HOH . H 3 HOH B 43 256 118 HOH HOH . H 3 HOH B 44 257 119 HOH HOH . H 3 HOH B 45 258 120 HOH HOH . H 3 HOH B 46 259 121 HOH HOH . H 3 HOH B 47 260 122 HOH HOH . H 3 HOH B 48 261 123 HOH HOH . H 3 HOH B 49 262 124 HOH HOH . H 3 HOH B 50 263 125 HOH HOH . H 3 HOH B 51 264 126 HOH HOH . H 3 HOH B 52 265 127 HOH HOH . H 3 HOH B 53 266 128 HOH HOH . H 3 HOH B 54 267 129 HOH HOH . H 3 HOH B 55 268 130 HOH HOH . H 3 HOH B 56 269 131 HOH HOH . H 3 HOH B 57 270 132 HOH HOH . H 3 HOH B 58 271 133 HOH HOH . H 3 HOH B 59 272 134 HOH HOH . H 3 HOH B 60 273 135 HOH HOH . H 3 HOH B 61 274 136 HOH HOH . H 3 HOH B 62 275 137 HOH HOH . H 3 HOH B 63 276 138 HOH HOH . H 3 HOH B 64 277 139 HOH HOH . H 3 HOH B 65 278 140 HOH HOH . H 3 HOH B 66 279 141 HOH HOH . H 3 HOH B 67 280 142 HOH HOH . H 3 HOH B 68 281 143 HOH HOH . H 3 HOH B 69 282 144 HOH HOH . H 3 HOH B 70 283 155 HOH HOH . H 3 HOH B 71 284 156 HOH HOH . H 3 HOH B 72 285 159 HOH HOH . H 3 HOH B 73 286 160 HOH HOH . H 3 HOH B 74 287 186 HOH HOH . H 3 HOH B 75 288 187 HOH HOH . H 3 HOH B 76 289 188 HOH HOH . H 3 HOH B 77 290 189 HOH HOH . H 3 HOH B 78 291 190 HOH HOH . H 3 HOH B 79 292 191 HOH HOH . H 3 HOH B 80 293 192 HOH HOH . H 3 HOH B 81 294 193 HOH HOH . H 3 HOH B 82 295 194 HOH HOH . H 3 HOH B 83 296 195 HOH HOH . H 3 HOH B 84 297 196 HOH HOH . H 3 HOH B 85 298 197 HOH HOH . H 3 HOH B 86 299 198 HOH HOH . H 3 HOH B 87 300 199 HOH HOH . H 3 HOH B 88 301 200 HOH HOH . H 3 HOH B 89 302 201 HOH HOH . H 3 HOH B 90 303 202 HOH HOH . H 3 HOH B 91 304 203 HOH HOH . H 3 HOH B 92 305 204 HOH HOH . H 3 HOH B 93 306 205 HOH HOH . H 3 HOH B 94 307 206 HOH HOH . H 3 HOH B 95 308 207 HOH HOH . H 3 HOH B 96 309 208 HOH HOH . H 3 HOH B 97 310 209 HOH HOH . H 3 HOH B 98 311 210 HOH HOH . H 3 HOH B 99 312 211 HOH HOH . H 3 HOH B 100 313 212 HOH HOH . H 3 HOH B 101 314 213 HOH HOH . H 3 HOH B 102 315 214 HOH HOH . H 3 HOH B 103 316 215 HOH HOH . H 3 HOH B 104 317 216 HOH HOH . H 3 HOH B 105 318 217 HOH HOH . H 3 HOH B 106 319 218 HOH HOH . H 3 HOH B 107 320 219 HOH HOH . H 3 HOH B 108 321 220 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 GTX . . . F 2 15.479 78.173 44.911 1 71.05 ? N1 GTX 213 B 1 HETATM 2 C CA1 GTX . . . F 2 16.292 77.253 45.749 1 68.42 ? CA1 GTX 213 B 1 HETATM 3 C C1 GTX . . . F 2 15.582 75.897 45.826 1 71.42 ? C1 GTX 213 B 1 HETATM 4 O O11 GTX . . . F 2 15.379 75.313 44.733 1 73.27 ? O11 GTX 213 B 1 HETATM 5 O O12 GTX . . . F 2 15.226 75.436 46.937 1 74.28 ? O12 GTX 213 B 1 HETATM 6 C CB1 GTX . . . F 2 16.52 77.862 47.141 1 60.32 ? CB1 GTX 213 B 1 HETATM 7 C CG1 GTX . . . F 2 15.34 78.654 47.68 1 51.77 ? CG1 GTX 213 B 1 HETATM 8 C CD1 GTX . . . F 2 15.733 79.612 48.789 1 45.93 ? CD1 GTX 213 B 1 HETATM 9 O OE1 GTX . . . F 2 16.498 80.548 48.567 1 44.71 ? OE1 GTX 213 B 1 HETATM 10 N N2 GTX . . . F 2 15.199 79.382 49.984 1 40.51 ? N2 GTX 213 B 1 HETATM 11 C CA2 GTX . . . F 2 15.491 80.232 51.13 1 36.51 ? CA2 GTX 213 B 1 HETATM 12 C C2 GTX . . . F 2 16.9 79.924 51.61 1 31.68 ? C2 GTX 213 B 1 HETATM 13 O O2 GTX . . . F 2 17.162 78.814 52.052 1 28.05 ? O2 GTX 213 B 1 HETATM 14 C CB2 GTX . . . F 2 14.5 79.957 52.266 1 37.3 ? CB2 GTX 213 B 1 HETATM 15 S SG2 GTX . . . F 2 14.243 81.34 53.423 1 38.52 ? SG2 GTX 213 B 1 HETATM 16 C C1S GTX . . . F 2 15.712 81.931 54.337 1 34.23 ? C1S GTX 213 B 1 HETATM 17 C C2S GTX . . . F 2 15.436 81.684 55.809 1 30.82 ? C2S GTX 213 B 1 HETATM 18 C C3S GTX . . . F 2 15.725 82.898 56.676 1 26.41 ? C3S GTX 213 B 1 HETATM 19 C C4S GTX . . . F 2 14.767 83.99 56.364 1 25.05 ? C4S GTX 213 B 1 HETATM 20 C C5S GTX . . . F 2 14.83 85.074 57.4 1 24.71 ? C5S GTX 213 B 1 HETATM 21 C C6S GTX . . . F 2 13.848 86.053 56.743 1 20.76 ? C6S GTX 213 B 1 HETATM 22 N N3 GTX . . . F 2 17.788 80.907 51.533 1 28.74 ? N3 GTX 213 B 1 HETATM 23 C CA3 GTX . . . F 2 19.158 80.705 51.961 1 28.4 ? CA3 GTX 213 B 1 HETATM 24 C C3 GTX . . . F 2 19.745 82.028 52.376 1 29.44 ? C3 GTX 213 B 1 HETATM 25 O O31 GTX . . . F 2 20.777 82.435 51.817 1 33.82 ? O31 GTX 213 B 1 HETATM 26 O O32 GTX . . . F 2 19.161 82.675 53.26 1 28.65 ? O32 GTX 213 B 1 HETATM 27 H HN11 GTX . . . F 2 15.999 79.065 44.734 1 0 ? HN11 GTX 213 B 1 HETATM 28 H HN12 GTX . . . F 2 14.573 78.327 45.361 1 0 ? HN12 GTX 213 B 1 HETATM 29 H HN13 GTX . . . F 2 15.371 77.618 44.047 1 0 ? HN13 GTX 213 B 1 HETATM 30 H HN2 GTX . . . F 2 14.617 78.608 50.117 1 0 ? HN2 GTX 213 B 1 HETATM 31 H HN3 GTX . . . F 2 17.554 81.79 51.19 1 0 ? HN3 GTX 213 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 840 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 31 #