data_1GNZ
#
_model_server_result.job_id            qJkYZcg7TnMCCbzpkTwFGA 
_model_server_result.datetime_utc      '2025-07-31 05:31:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1gnz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":304}' 
#
_entry.id    1GNZ 
#
_exptl.entry_id    1GNZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1GNZ 
_cell.length_a            75.927 
_cell.length_b            75.927 
_cell.length_c            190.566 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1GNZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        181 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 64 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F 1 1 
A,B,C,D,E,F 1 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 9_555 -x,-x+y,-z+2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 127.044 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A ND2 ASN 27 A ASN 27 1_555 D C1 NAG . A NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? 
covale ? covale2 A ND2 ASN 112 A ASN 112 1_555 E C1 NAG . A NAG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     1GNZ 
_atom_sites.fract_transf_matrix[1][1]    0.01317 
_atom_sites.fract_transf_matrix[1][2]    0.007604 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015208 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005247 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PO4 A 1 301 1240 PO4 PO4 . 
C 2 PO4 A 1 302 1241 PO4 PO4 . 
D 3 NAG A 1 303 1242 NAG NAG . 
E 3 NAG A 1 304 1243 NAG NAG . 
F 4 HOH A 1 401 2032 HOH HOH . 
F 4 HOH A 2 402 2066 HOH HOH . 
F 4 HOH A 3 403 2035 HOH HOH . 
F 4 HOH A 4 404 2052 HOH HOH . 
F 4 HOH A 5 405 2011 HOH HOH . 
F 4 HOH A 6 406 2050 HOH HOH . 
F 4 HOH A 7 407 2038 HOH HOH . 
F 4 HOH A 8 408 2043 HOH HOH . 
F 4 HOH A 9 409 2017 HOH HOH . 
F 4 HOH A 10 410 2014 HOH HOH . 
F 4 HOH A 11 411 2020 HOH HOH . 
F 4 HOH A 12 412 2031 HOH HOH . 
F 4 HOH A 13 413 2021 HOH HOH . 
F 4 HOH A 14 414 2044 HOH HOH . 
F 4 HOH A 15 415 2030 HOH HOH . 
F 4 HOH A 16 416 2055 HOH HOH . 
F 4 HOH A 17 417 2033 HOH HOH . 
F 4 HOH A 18 418 2026 HOH HOH . 
F 4 HOH A 19 419 2049 HOH HOH . 
F 4 HOH A 20 420 2025 HOH HOH . 
F 4 HOH A 21 421 2024 HOH HOH . 
F 4 HOH A 22 422 2018 HOH HOH . 
F 4 HOH A 23 423 2016 HOH HOH . 
F 4 HOH A 24 424 2054 HOH HOH . 
F 4 HOH A 25 425 2006 HOH HOH . 
F 4 HOH A 26 426 2048 HOH HOH . 
F 4 HOH A 27 427 2042 HOH HOH . 
F 4 HOH A 28 428 2059 HOH HOH . 
F 4 HOH A 29 429 2051 HOH HOH . 
F 4 HOH A 30 430 2062 HOH HOH . 
F 4 HOH A 31 431 2067 HOH HOH . 
F 4 HOH A 32 432 2060 HOH HOH . 
F 4 HOH A 33 433 2061 HOH HOH . 
F 4 HOH A 34 434 2046 HOH HOH . 
F 4 HOH A 35 435 2028 HOH HOH . 
F 4 HOH A 36 436 2045 HOH HOH . 
F 4 HOH A 37 437 2064 HOH HOH . 
F 4 HOH A 38 438 2003 HOH HOH . 
F 4 HOH A 39 439 2013 HOH HOH . 
F 4 HOH A 40 440 2015 HOH HOH . 
F 4 HOH A 41 441 2040 HOH HOH . 
F 4 HOH A 42 442 2019 HOH HOH . 
F 4 HOH A 43 443 2065 HOH HOH . 
F 4 HOH A 44 444 2022 HOH HOH . 
F 4 HOH A 45 445 2057 HOH HOH . 
F 4 HOH A 46 446 2027 HOH HOH . 
F 4 HOH A 47 447 2047 HOH HOH . 
F 4 HOH A 48 448 2029 HOH HOH . 
F 4 HOH A 49 449 2056 HOH HOH . 
F 4 HOH A 50 450 2058 HOH HOH . 
F 4 HOH A 51 451 2041 HOH HOH . 
F 4 HOH A 52 452 2063 HOH HOH . 
F 4 HOH A 53 453 2012 HOH HOH . 
F 4 HOH A 54 454 2037 HOH HOH . 
F 4 HOH A 55 455 2002 HOH HOH . 
F 4 HOH A 56 456 2039 HOH HOH . 
F 4 HOH A 57 457 2068 HOH HOH . 
F 4 HOH A 58 458 2005 HOH HOH . 
F 4 HOH A 59 459 2036 HOH HOH . 
F 4 HOH A 60 460 2010 HOH HOH . 
F 4 HOH A 61 461 2023 HOH HOH . 
F 4 HOH A 62 462 2007 HOH HOH . 
F 4 HOH A 63 463 2034 HOH HOH . 
F 4 HOH A 64 464 2008 HOH HOH . 
F 4 HOH A 65 465 2053 HOH HOH . 
F 4 HOH A 66 466 2009 HOH HOH . 
F 4 HOH A 67 467 2004 HOH HOH . 
F 4 HOH A 68 468 2001 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . E 3 -24.471 59.79 94.23 1 70.59 ? C1 NAG 304 A 1 
HETATM 2 C C2 NAG . . . E 3 -23.825 60.658 95.326 1 73.96 ? C2 NAG 304 A 1 
HETATM 3 C C3 NAG . . . E 3 -22.401 60.183 95.638 1 78.53 ? C3 NAG 304 A 1 
HETATM 4 C C4 NAG . . . E 3 -22.446 58.694 95.998 1 79.35 ? C4 NAG 304 A 1 
HETATM 5 C C5 NAG . . . E 3 -23.072 57.924 94.83 1 79.02 ? C5 NAG 304 A 1 
HETATM 6 C C6 NAG . . . E 3 -23.162 56.442 95.104 1 58.98 ? C6 NAG 304 A 1 
HETATM 7 C C7 NAG . . . E 3 -24.821 62.841 95.254 1 68.24 ? C7 NAG 304 A 1 
HETATM 8 C C8 NAG . . . E 3 -24.765 64.285 94.778 1 70.21 ? C8 NAG 304 A 1 
HETATM 9 N N2 NAG . . . E 3 -23.816 62.044 94.905 1 70.52 ? N2 NAG 304 A 1 
HETATM 10 O O3 NAG . . . E 3 -21.859 60.93 96.72 1 66.86 ? O3 NAG 304 A 1 
HETATM 11 O O4 NAG . . . E 3 -21.136 58.209 96.258 1 85.02 ? O4 NAG 304 A 1 
HETATM 12 O O5 NAG . . . E 3 -24.42 58.396 94.587 1 63.55 ? O5 NAG 304 A 1 
HETATM 13 O O6 NAG . . . E 3 -24.065 56.178 96.166 1 84.66 ? O6 NAG 304 A 1 
HETATM 14 O O7 NAG . . . E 3 -25.77 62.456 95.939 1 52.56 ? O7 NAG 304 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           262 
_model_server_stats.encode_time_ms          20 
_model_server_stats.element_count           14 
#