data_1GOL # _model_server_result.job_id WncRAkXmfVZdaO_eg9WBYg _model_server_result.datetime_utc '2024-10-24 04:30:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1gol # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":581}' # _entry.id 1GOL # _exptl.entry_id 1GOL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.75 _cell.angle_gamma 90 _cell.entry_id 1GOL _cell.length_a 49.32 _cell.length_b 71.42 _cell.length_c 61.25 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GOL _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND2 ASN 158 A ASN 152 1_555 B MG MG . A MG 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? metalc ? metalc2 A OD2 ASP 171 A ASP 165 1_555 B MG MG . A MG 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? metalc ? metalc3 C O1G ATP . A ATP 581 1_555 B MG MG . A MG 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 1GOL _atom_sites.fract_transf_matrix[1][1] 0.020276 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00728 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014002 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017347 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 582 582 MG MG . C 3 ATP A 1 581 581 ATP ATP . D 4 HOH A 1 502 502 HOH HOH . D 4 HOH A 2 503 503 HOH HOH . D 4 HOH A 3 504 504 HOH HOH . D 4 HOH A 4 505 505 HOH HOH . D 4 HOH A 5 506 506 HOH HOH . D 4 HOH A 6 507 507 HOH HOH . D 4 HOH A 7 508 508 HOH HOH . D 4 HOH A 8 509 509 HOH HOH . D 4 HOH A 9 511 511 HOH HOH . D 4 HOH A 10 512 512 HOH HOH . D 4 HOH A 11 513 513 HOH HOH . D 4 HOH A 12 514 514 HOH HOH . D 4 HOH A 13 515 515 HOH HOH . D 4 HOH A 14 516 516 HOH HOH . D 4 HOH A 15 517 517 HOH HOH . D 4 HOH A 16 518 518 HOH HOH . D 4 HOH A 17 519 519 HOH HOH . D 4 HOH A 18 520 520 HOH HOH . D 4 HOH A 19 521 521 HOH HOH . D 4 HOH A 20 522 522 HOH HOH . D 4 HOH A 21 523 523 HOH HOH . D 4 HOH A 22 524 524 HOH HOH . D 4 HOH A 23 525 525 HOH HOH . D 4 HOH A 24 526 526 HOH HOH . D 4 HOH A 25 527 527 HOH HOH . D 4 HOH A 26 528 528 HOH HOH . D 4 HOH A 27 529 529 HOH HOH . D 4 HOH A 28 530 530 HOH HOH . D 4 HOH A 29 531 531 HOH HOH . D 4 HOH A 30 532 532 HOH HOH . D 4 HOH A 31 533 533 HOH HOH . D 4 HOH A 32 534 534 HOH HOH . D 4 HOH A 33 535 535 HOH HOH . D 4 HOH A 34 536 536 HOH HOH . D 4 HOH A 35 537 537 HOH HOH . D 4 HOH A 36 538 538 HOH HOH . D 4 HOH A 37 539 539 HOH HOH . D 4 HOH A 38 540 540 HOH HOH . D 4 HOH A 39 541 541 HOH HOH . D 4 HOH A 40 542 542 HOH HOH . D 4 HOH A 41 543 543 HOH HOH . D 4 HOH A 42 544 544 HOH HOH . D 4 HOH A 43 545 545 HOH HOH . D 4 HOH A 44 546 546 HOH HOH . D 4 HOH A 45 600 600 HOH HOH . D 4 HOH A 46 601 601 HOH HOH . D 4 HOH A 47 603 603 HOH HOH . D 4 HOH A 48 604 604 HOH HOH . D 4 HOH A 49 605 605 HOH HOH . D 4 HOH A 50 606 606 HOH HOH . D 4 HOH A 51 607 607 HOH HOH . D 4 HOH A 52 608 608 HOH HOH . D 4 HOH A 53 609 609 HOH HOH . D 4 HOH A 54 610 610 HOH HOH . D 4 HOH A 55 704 704 HOH HOH . D 4 HOH A 56 705 705 HOH HOH . D 4 HOH A 57 706 706 HOH HOH . D 4 HOH A 58 707 707 HOH HOH . D 4 HOH A 59 708 708 HOH HOH . D 4 HOH A 60 709 709 HOH HOH . D 4 HOH A 61 710 710 HOH HOH . D 4 HOH A 62 711 711 HOH HOH . D 4 HOH A 63 712 712 HOH HOH . D 4 HOH A 64 713 713 HOH HOH . D 4 HOH A 65 714 714 HOH HOH . D 4 HOH A 66 715 715 HOH HOH . D 4 HOH A 67 716 716 HOH HOH . D 4 HOH A 68 717 717 HOH HOH . D 4 HOH A 69 718 718 HOH HOH . D 4 HOH A 70 719 719 HOH HOH . D 4 HOH A 71 811 811 HOH HOH . D 4 HOH A 72 812 812 HOH HOH . D 4 HOH A 73 813 813 HOH HOH . D 4 HOH A 74 814 814 HOH HOH . D 4 HOH A 75 815 815 HOH HOH . D 4 HOH A 76 816 816 HOH HOH . D 4 HOH A 77 817 817 HOH HOH . D 4 HOH A 78 818 818 HOH HOH . D 4 HOH A 79 819 819 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . C 3 -8.11 17.672 43.389 1 74.25 ? PG ATP 581 A 1 HETATM 2 O O1G ATP . . . C 3 -8.427 16.46 42.636 1 75.97 ? O1G ATP 581 A 1 HETATM 3 O O2G ATP . . . C 3 -7.622 18.811 42.544 1 73.42 ? O2G ATP 581 A 1 HETATM 4 O O3G ATP . . . C 3 -7.305 17.366 44.635 1 80.31 ? O3G ATP 581 A 1 HETATM 5 P PB ATP . . . C 3 -10.967 17.578 43.672 1 76.28 ? PB ATP 581 A 1 HETATM 6 O O1B ATP . . . C 3 -11.24 16.373 44.489 1 78.9 ? O1B ATP 581 A 1 HETATM 7 O O2B ATP . . . C 3 -11.835 18.766 43.77 1 73.52 ? O2B ATP 581 A 1 HETATM 8 O O3B ATP . . . C 3 -9.565 18.129 43.998 1 75.87 ? O3B ATP 581 A 1 HETATM 9 P PA ATP . . . C 3 -11.252 15.962 41.105 1 83.82 ? PA ATP 581 A 1 HETATM 10 O O1A ATP . . . C 3 -10.384 15.784 39.839 1 80.66 ? O1A ATP 581 A 1 HETATM 11 O O2A ATP . . . C 3 -11.459 14.708 41.98 1 84.8 ? O2A ATP 581 A 1 HETATM 12 O O3A ATP . . . C 3 -10.681 17.207 42.071 1 79.71 ? O3A ATP 581 A 1 HETATM 13 O O5' ATP . . . C 3 -12.848 16.769 40.554 1 78.74 ? O5' ATP 581 A 1 HETATM 14 C C5' ATP . . . C 3 -13.508 17.903 41.411 1 65.43 ? C5' ATP 581 A 1 HETATM 15 C C4' ATP . . . C 3 -14.548 17.635 42.684 1 57.69 ? C4' ATP 581 A 1 HETATM 16 O O4' ATP . . . C 3 -15.854 16.767 42.312 1 50.6 ? O4' ATP 581 A 1 HETATM 17 C C3' ATP . . . C 3 -14.209 17.219 44.224 1 54.37 ? C3' ATP 581 A 1 HETATM 18 O O3' ATP . . . C 3 -15.162 17.942 44.944 1 54.15 ? O3' ATP 581 A 1 HETATM 19 C C2' ATP . . . C 3 -14.581 15.817 44.334 1 51.12 ? C2' ATP 581 A 1 HETATM 20 O O2' ATP . . . C 3 -14.707 15.24 45.59 1 53.28 ? O2' ATP 581 A 1 HETATM 21 C C1' ATP . . . C 3 -15.917 15.643 43.524 1 44.78 ? C1' ATP 581 A 1 HETATM 22 N N9 ATP . . . C 3 -15.913 14.294 42.919 1 38.64 ? N9 ATP 581 A 1 HETATM 23 C C8 ATP . . . C 3 -14.667 13.897 42.005 1 37.96 ? C8 ATP 581 A 1 HETATM 24 N N7 ATP . . . C 3 -15.538 13.021 40.515 1 37.16 ? N7 ATP 581 A 1 HETATM 25 C C5 ATP . . . C 3 -16.803 12.89 41.182 1 36.3 ? C5 ATP 581 A 1 HETATM 26 C C6 ATP . . . C 3 -17.54 11.698 41.368 1 34.95 ? C6 ATP 581 A 1 HETATM 27 N N6 ATP . . . C 3 -17.377 10.479 40.81 1 35.34 ? N6 ATP 581 A 1 HETATM 28 N N1 ATP . . . C 3 -18.622 12.086 42.289 1 35.14 ? N1 ATP 581 A 1 HETATM 29 C C2 ATP . . . C 3 -18.996 13.444 42.633 1 33.72 ? C2 ATP 581 A 1 HETATM 30 N N3 ATP . . . C 3 -18.274 14.503 42.29 1 36.89 ? N3 ATP 581 A 1 HETATM 31 C C4 ATP . . . C 3 -17.054 13.978 42.057 1 36.32 ? C4 ATP 581 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #