data_1GP9 # _model_server_result.job_id rb9wvgEBCLJxbdl_pQcWxA _model_server_result.datetime_utc '2024-11-16 12:26:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1gp9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1209}' # _entry.id 1GP9 # _exptl.entry_id 1GP9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1GP9 _cell.length_a 73.48 _cell.length_b 78.26 _cell.length_c 304.46 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GP9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS dimeric 2 author_and_software_defined_assembly 1 PQS dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,J,K 1 1 C,D,H,I,L,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 37 A CYS 70 1_555 A SG CYS 63 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 41 A CYS 74 1_555 A SG CYS 51 A CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf3 A SG CYS 95 A CYS 128 1_555 A SG CYS 173 A CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf4 A SG CYS 116 A CYS 149 1_555 A SG CYS 156 A CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf5 A SG CYS 144 A CYS 177 1_555 A SG CYS 168 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf6 B SG CYS 37 B CYS 70 1_555 B SG CYS 63 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf7 B SG CYS 41 B CYS 74 1_555 B SG CYS 51 B CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf8 B SG CYS 95 B CYS 128 1_555 B SG CYS 173 B CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf9 B SG CYS 116 B CYS 149 1_555 B SG CYS 156 B CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf10 B SG CYS 144 B CYS 177 1_555 B SG CYS 168 B CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf11 C SG CYS 37 C CYS 70 1_555 C SG CYS 63 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf12 C SG CYS 41 C CYS 74 1_555 C SG CYS 51 C CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf13 C SG CYS 95 C CYS 128 1_555 C SG CYS 173 C CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf14 C SG CYS 116 C CYS 149 1_555 C SG CYS 156 C CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf15 C SG CYS 144 C CYS 177 1_555 C SG CYS 168 C CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf16 D SG CYS 37 D CYS 70 1_555 D SG CYS 63 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf17 D SG CYS 41 D CYS 74 1_555 D SG CYS 51 D CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf18 D SG CYS 95 D CYS 128 1_555 D SG CYS 173 D CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf19 D SG CYS 116 D CYS 149 1_555 D SG CYS 156 D CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf20 D SG CYS 144 D CYS 177 1_555 D SG CYS 168 D CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 83 n n N1 C6 EPE sing 84 n n N1 C9 EPE sing 85 n n C2 C3 EPE sing 86 n n C2 H21 EPE sing 87 n n C2 H22 EPE sing 88 n n C3 N4 EPE sing 89 n n C3 H31 EPE sing 90 n n C3 H32 EPE sing 91 n n N4 C5 EPE sing 92 n n N4 C7 EPE sing 93 n n C5 C6 EPE sing 94 n n C5 H51 EPE sing 95 n n C5 H52 EPE sing 96 n n C6 H61 EPE sing 97 n n C6 H62 EPE sing 98 n n C7 C8 EPE sing 99 n n C7 H71 EPE sing 100 n n C7 H72 EPE sing 101 n n C8 O8 EPE sing 102 n n C8 H81 EPE sing 103 n n C8 H82 EPE sing 104 n n O8 HO8 EPE sing 105 n n C9 C10 EPE sing 106 n n C9 H91 EPE sing 107 n n C9 H92 EPE sing 108 n n C10 S EPE sing 109 n n C10 H101 EPE sing 110 n n C10 H102 EPE sing 111 n n S O1S EPE doub 112 n n S O2S EPE doub 113 n n S O3S EPE sing 114 n n O3S HOS3 EPE sing 115 n n # _atom_sites.entry_id 1GP9 _atom_sites.fract_transf_matrix[1][1] 0.013609 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012778 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003285 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 EPE A 1 1209 1209 EPE EPE . F 2 EPE B 1 1209 1209 EPE EPE . G 2 EPE B 1 1210 1210 EPE EPE . H 2 EPE C 1 1209 1209 EPE EPE . I 2 EPE D 1 1209 1209 EPE EPE . J 3 HOH A 1 2001 2001 HOH HOH . J 3 HOH A 2 2002 2002 HOH HOH . J 3 HOH A 3 2003 2003 HOH HOH . J 3 HOH A 4 2004 2004 HOH HOH . J 3 HOH A 5 2005 2005 HOH HOH . J 3 HOH A 6 2006 2006 HOH HOH . J 3 HOH A 7 2007 2007 HOH HOH . J 3 HOH A 8 2008 2008 HOH HOH . J 3 HOH A 9 2009 2009 HOH HOH . J 3 HOH A 10 2010 2010 HOH HOH . J 3 HOH A 11 2011 2011 HOH HOH . J 3 HOH A 12 2012 2012 HOH HOH . J 3 HOH A 13 2013 2013 HOH HOH . J 3 HOH A 14 2014 2014 HOH HOH . J 3 HOH A 15 2015 2015 HOH HOH . J 3 HOH A 16 2016 2016 HOH HOH . J 3 HOH A 17 2017 2017 HOH HOH . J 3 HOH A 18 2018 2018 HOH HOH . J 3 HOH A 19 2019 2019 HOH HOH . J 3 HOH A 20 2020 2020 HOH HOH . J 3 HOH A 21 2021 2021 HOH HOH . J 3 HOH A 22 2022 2022 HOH HOH . J 3 HOH A 23 2023 2023 HOH HOH . J 3 HOH A 24 2024 2024 HOH HOH . J 3 HOH A 25 2025 2025 HOH HOH . J 3 HOH A 26 2026 2026 HOH HOH . J 3 HOH A 27 2027 2027 HOH HOH . J 3 HOH A 28 2028 2028 HOH HOH . J 3 HOH A 29 2029 2029 HOH HOH . J 3 HOH A 30 2030 2030 HOH HOH . J 3 HOH A 31 2031 2031 HOH HOH . J 3 HOH A 32 2032 2032 HOH HOH . K 3 HOH B 1 2001 2001 HOH HOH . K 3 HOH B 2 2002 2002 HOH HOH . K 3 HOH B 3 2003 2003 HOH HOH . K 3 HOH B 4 2004 2004 HOH HOH . K 3 HOH B 5 2005 2005 HOH HOH . K 3 HOH B 6 2006 2006 HOH HOH . K 3 HOH B 7 2007 2007 HOH HOH . K 3 HOH B 8 2008 2008 HOH HOH . K 3 HOH B 9 2009 2009 HOH HOH . K 3 HOH B 10 2010 2010 HOH HOH . K 3 HOH B 11 2011 2011 HOH HOH . K 3 HOH B 12 2012 2012 HOH HOH . K 3 HOH B 13 2013 2013 HOH HOH . K 3 HOH B 14 2014 2014 HOH HOH . K 3 HOH B 15 2015 2015 HOH HOH . K 3 HOH B 16 2016 2016 HOH HOH . K 3 HOH B 17 2017 2017 HOH HOH . K 3 HOH B 18 2018 2018 HOH HOH . K 3 HOH B 19 2019 2019 HOH HOH . K 3 HOH B 20 2020 2020 HOH HOH . K 3 HOH B 21 2021 2021 HOH HOH . K 3 HOH B 22 2022 2022 HOH HOH . K 3 HOH B 23 2023 2023 HOH HOH . K 3 HOH B 24 2024 2024 HOH HOH . K 3 HOH B 25 2025 2025 HOH HOH . K 3 HOH B 26 2026 2026 HOH HOH . K 3 HOH B 27 2027 2027 HOH HOH . K 3 HOH B 28 2028 2028 HOH HOH . K 3 HOH B 29 2029 2029 HOH HOH . K 3 HOH B 30 2030 2030 HOH HOH . K 3 HOH B 31 2031 2031 HOH HOH . K 3 HOH B 32 2032 2032 HOH HOH . K 3 HOH B 33 2033 2033 HOH HOH . K 3 HOH B 34 2034 2034 HOH HOH . K 3 HOH B 35 2035 2035 HOH HOH . K 3 HOH B 36 2036 2036 HOH HOH . K 3 HOH B 37 2037 2037 HOH HOH . K 3 HOH B 38 2038 2038 HOH HOH . K 3 HOH B 39 2039 2039 HOH HOH . K 3 HOH B 40 2040 2040 HOH HOH . L 3 HOH C 1 2001 2001 HOH HOH . L 3 HOH C 2 2002 2002 HOH HOH . L 3 HOH C 3 2003 2003 HOH HOH . L 3 HOH C 4 2004 2004 HOH HOH . L 3 HOH C 5 2005 2005 HOH HOH . L 3 HOH C 6 2006 2006 HOH HOH . L 3 HOH C 7 2007 2007 HOH HOH . L 3 HOH C 8 2008 2008 HOH HOH . L 3 HOH C 9 2009 2009 HOH HOH . L 3 HOH C 10 2010 2010 HOH HOH . L 3 HOH C 11 2011 2011 HOH HOH . L 3 HOH C 12 2012 2012 HOH HOH . L 3 HOH C 13 2013 2013 HOH HOH . L 3 HOH C 14 2014 2014 HOH HOH . L 3 HOH C 15 2015 2015 HOH HOH . L 3 HOH C 16 2016 2016 HOH HOH . L 3 HOH C 17 2017 2017 HOH HOH . L 3 HOH C 18 2018 2018 HOH HOH . L 3 HOH C 19 2019 2019 HOH HOH . L 3 HOH C 20 2020 2020 HOH HOH . L 3 HOH C 21 2021 2021 HOH HOH . L 3 HOH C 22 2022 2022 HOH HOH . L 3 HOH C 23 2023 2023 HOH HOH . L 3 HOH C 24 2024 2024 HOH HOH . L 3 HOH C 25 2025 2025 HOH HOH . L 3 HOH C 26 2026 2026 HOH HOH . L 3 HOH C 27 2027 2027 HOH HOH . L 3 HOH C 28 2028 2028 HOH HOH . L 3 HOH C 29 2029 2029 HOH HOH . L 3 HOH C 30 2030 2030 HOH HOH . L 3 HOH C 31 2031 2031 HOH HOH . L 3 HOH C 32 2032 2032 HOH HOH . L 3 HOH C 33 2033 2033 HOH HOH . L 3 HOH C 34 2034 2034 HOH HOH . L 3 HOH C 35 2035 2035 HOH HOH . L 3 HOH C 36 2036 2036 HOH HOH . L 3 HOH C 37 2037 2037 HOH HOH . L 3 HOH C 38 2038 2038 HOH HOH . L 3 HOH C 39 2039 2039 HOH HOH . L 3 HOH C 40 2040 2040 HOH HOH . L 3 HOH C 41 2041 2041 HOH HOH . L 3 HOH C 42 2042 2042 HOH HOH . L 3 HOH C 43 2043 2043 HOH HOH . L 3 HOH C 44 2044 2044 HOH HOH . L 3 HOH C 45 2045 2045 HOH HOH . L 3 HOH C 46 2046 2046 HOH HOH . L 3 HOH C 47 2047 2047 HOH HOH . M 3 HOH D 1 2001 2001 HOH HOH . M 3 HOH D 2 2002 2002 HOH HOH . M 3 HOH D 3 2003 2003 HOH HOH . M 3 HOH D 4 2004 2004 HOH HOH . M 3 HOH D 5 2005 2005 HOH HOH . M 3 HOH D 6 2006 2006 HOH HOH . M 3 HOH D 7 2007 2007 HOH HOH . M 3 HOH D 8 2008 2008 HOH HOH . M 3 HOH D 9 2009 2009 HOH HOH . M 3 HOH D 10 2010 2010 HOH HOH . M 3 HOH D 11 2011 2011 HOH HOH . M 3 HOH D 12 2012 2012 HOH HOH . M 3 HOH D 13 2013 2013 HOH HOH . M 3 HOH D 14 2014 2014 HOH HOH . M 3 HOH D 15 2015 2015 HOH HOH . M 3 HOH D 16 2016 2016 HOH HOH . M 3 HOH D 17 2017 2017 HOH HOH . M 3 HOH D 18 2018 2018 HOH HOH . M 3 HOH D 19 2019 2019 HOH HOH . M 3 HOH D 20 2020 2020 HOH HOH . M 3 HOH D 21 2021 2021 HOH HOH . M 3 HOH D 22 2022 2022 HOH HOH . M 3 HOH D 23 2023 2023 HOH HOH . M 3 HOH D 24 2024 2024 HOH HOH . M 3 HOH D 25 2025 2025 HOH HOH . M 3 HOH D 26 2026 2026 HOH HOH . M 3 HOH D 27 2027 2027 HOH HOH . M 3 HOH D 28 2028 2028 HOH HOH . M 3 HOH D 29 2029 2029 HOH HOH . M 3 HOH D 30 2030 2030 HOH HOH . M 3 HOH D 31 2031 2031 HOH HOH . M 3 HOH D 32 2032 2032 HOH HOH . M 3 HOH D 33 2033 2033 HOH HOH . M 3 HOH D 34 2034 2034 HOH HOH . M 3 HOH D 35 2035 2035 HOH HOH . M 3 HOH D 36 2036 2036 HOH HOH . M 3 HOH D 37 2037 2037 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . F 2 55.146 14.997 5.811 1 77.94 ? N1 EPE 1209 B 1 HETATM 2 C C2 EPE . . . F 2 54.736 14.471 7.165 1 76.35 ? C2 EPE 1209 B 1 HETATM 3 C C3 EPE . . . F 2 54.19 15.628 7.987 1 80.01 ? C3 EPE 1209 B 1 HETATM 4 N N4 EPE . . . F 2 55.256 16.642 8.203 1 81.28 ? N4 EPE 1209 B 1 HETATM 5 C C5 EPE . . . F 2 55.684 17.202 6.869 1 81.76 ? C5 EPE 1209 B 1 HETATM 6 C C6 EPE . . . F 2 56.225 16.063 5.973 1 77.26 ? C6 EPE 1209 B 1 HETATM 7 C C7 EPE . . . F 2 54.787 17.793 9.015 1 81.81 ? C7 EPE 1209 B 1 HETATM 8 C C8 EPE . . . F 2 54.338 17.381 10.407 1 80.64 ? C8 EPE 1209 B 1 HETATM 9 O O8 EPE . . . F 2 53.016 17.784 10.734 1 77.92 ? O8 EPE 1209 B 1 HETATM 10 C C9 EPE . . . F 2 55.719 13.895 4.967 1 72.49 ? C9 EPE 1209 B 1 HETATM 11 C C10 EPE . . . F 2 55.357 14.071 3.485 1 70.59 ? C10 EPE 1209 B 1 HETATM 12 S S EPE . . . F 2 56.073 12.723 2.5 1 73.58 ? S EPE 1209 B 1 HETATM 13 O O1S EPE . . . F 2 55.661 13.029 1.155 1 75.5 ? O1S EPE 1209 B 1 HETATM 14 O O2S EPE . . . F 2 55.505 11.471 2.995 1 73.76 ? O2S EPE 1209 B 1 HETATM 15 O O3S EPE . . . F 2 57.484 12.779 2.662 1 69.61 ? O3S EPE 1209 B 1 # _model_server_stats.io_time_ms 78 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 52 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 15 #