data_1GPH
#
_model_server_result.job_id            '_l11tySR89p6Udb8WknEnA' 
_model_server_result.datetime_utc      '2024-11-08 11:54:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1gph 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":466}' 
#
_entry.id    1GPH 
#
_exptl.entry_id    1GPH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              351.64 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'IRON/SULFUR CLUSTER' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.4 
_cell.angle_gamma         90 
_cell.entry_id            1GPH 
_cell.length_a            158.8 
_cell.length_b            75.7 
_cell.length_c            94.1 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1GPH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS tetrameric 4 author_and_software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 1 1 
A,B,E,F,G,H,I,J 2 1 
C,D,K,L,M,N,O,P 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 H N N 
? 2 K N N 
? 2 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 236 1 CYS 236 1_555 E FE2 SF4 . 1 SF4 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? 
metalc ? metalc2 A SG CYS 382 1 CYS 382 1_555 E FE4 SF4 . 1 SF4 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? 
metalc ? metalc3 A SG CYS 437 1 CYS 437 1_555 E FE1 SF4 . 1 SF4 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? 
metalc ? metalc4 A SG CYS 440 1 CYS 440 1_555 E FE3 SF4 . 1 SF4 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? 
metalc ? metalc5 B SG CYS 236 2 CYS 236 1_555 H FE2 SF4 . 2 SF4 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
metalc ? metalc6 B SG CYS 382 2 CYS 382 1_555 H FE4 SF4 . 2 SF4 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? 
metalc ? metalc7 B SG CYS 437 2 CYS 437 1_555 H FE1 SF4 . 2 SF4 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? 
metalc ? metalc8 B SG CYS 440 2 CYS 440 1_555 H FE3 SF4 . 2 SF4 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? 
metalc ? metalc9 C SG CYS 236 3 CYS 236 1_555 K FE2 SF4 . 3 SF4 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? 
metalc ? metalc10 C SG CYS 382 3 CYS 382 1_555 K FE4 SF4 . 3 SF4 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? 
metalc ? metalc11 C SG CYS 437 3 CYS 437 1_555 K FE1 SF4 . 3 SF4 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc12 C SG CYS 440 3 CYS 440 1_555 K FE3 SF4 . 3 SF4 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? 
metalc ? metalc13 D SG CYS 236 4 CYS 236 1_555 N FE2 SF4 . 4 SF4 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? 
metalc ? metalc14 D SG CYS 382 4 CYS 382 1_555 N FE4 SF4 . 4 SF4 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? 
metalc ? metalc15 D SG CYS 437 4 CYS 437 1_555 N FE1 SF4 . 4 SF4 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? 
metalc ? metalc16 D SG CYS 440 4 CYS 440 1_555 N FE3 SF4 . 4 SF4 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
#
_chem_comp.formula           'Fe4 S4' 
_chem_comp.formula_weight    351.64 
_chem_comp.id                SF4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'IRON/SULFUR CLUSTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE1 S2 SF4 sing 327 n n 
FE1 S3 SF4 sing 328 n n 
FE1 S4 SF4 sing 329 n n 
FE2 S1 SF4 sing 330 n n 
FE2 S3 SF4 sing 331 n n 
FE2 S4 SF4 sing 332 n n 
FE3 S1 SF4 sing 333 n n 
FE3 S2 SF4 sing 334 n n 
FE3 S4 SF4 sing 335 n n 
FE4 S1 SF4 sing 336 n n 
FE4 S2 SF4 sing 337 n n 
FE4 S3 SF4 sing 338 n n 
#
_atom_sites.entry_id                     1GPH 
_atom_sites.fract_transf_matrix[1][1]    0.006297 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000154 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01321 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01063 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 SF4 1 1 466 466 SF4 FS4 . 
F 3 AMP 1 1 467 467 AMP AMP . 
G 3 AMP 1 1 468 468 AMP AMP . 
H 2 SF4 2 1 466 466 SF4 FS4 . 
I 3 AMP 2 1 467 467 AMP AMP . 
J 3 AMP 2 1 468 468 AMP AMP . 
K 2 SF4 3 1 466 466 SF4 FS4 . 
L 3 AMP 3 1 467 467 AMP AMP . 
M 3 AMP 3 1 468 468 AMP AMP . 
N 2 SF4 4 1 466 466 SF4 FS4 . 
O 3 AMP 4 1 467 467 AMP AMP . 
P 3 AMP 4 1 468 468 AMP AMP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE1 SF4 . . . E 2 147.864 37.845 -3.58 1 19.21 ? FE1 SF4 466 1 1 
HETATM 2 FE FE2 SF4 . . . E 2 147.237 37.016 -1.339 1 19.21 ? FE2 SF4 466 1 1 
HETATM 3 FE FE3 SF4 . . . E 2 147.544 39.517 -1.757 1 19.21 ? FE3 SF4 466 1 1 
HETATM 4 FE FE4 SF4 . . . E 2 145.535 38.37 -2.64 1 19.21 ? FE4 SF4 466 1 1 
HETATM 5 S S1 SF4 . . . E 2 145.916 38.601 -0.417 1 19.21 ? S1 SF4 466 1 1 
HETATM 6 S S2 SF4 . . . E 2 146.774 39.813 -3.902 1 19.21 ? S2 SF4 466 1 1 
HETATM 7 S S3 SF4 . . . E 2 146.252 36.298 -3.252 1 19.21 ? S3 SF4 466 1 1 
HETATM 8 S S4 SF4 . . . E 2 149.239 38.047 -1.734 1 19.21 ? S4 SF4 466 1 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    38 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           8 
#