data_1GQS # _model_server_result.job_id 6NqZA-YR7FX0-QDfs44SvQ _model_server_result.datetime_utc '2025-02-27 14:07:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1gqs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 1GQS # _exptl.entry_id 1GQS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1GQS _cell.length_a 111.04 _cell.length_b 111.04 _cell.length_c 137.227 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GQS _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 64 A CYS 67 1_555 A SG CYS 91 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf2 A SG CYS 251 A CYS 254 1_555 A SG CYS 262 A CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 399 A CYS 402 1_555 A SG CYS 518 A CYS 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 A ND2 ASN 56 A ASN 59 1_555 B C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.474 ? covale ? covale2 A ND2 ASN 413 A ASN 416 1_555 C C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1GQS _atom_sites.fract_transf_matrix[1][1] 0.009006 _atom_sites.fract_transf_matrix[1][2] 0.005199 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010399 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007287 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 601 1536 NAG NAG . C 2 NAG A 1 602 1537 NAG NAG . D 3 SAF A 1 603 1538 SAF SAF . E 4 HOH A 1 701 2137 HOH HOH . E 4 HOH A 2 702 2067 HOH HOH . E 4 HOH A 3 703 2041 HOH HOH . E 4 HOH A 4 704 2112 HOH HOH . E 4 HOH A 5 705 2038 HOH HOH . E 4 HOH A 6 706 2088 HOH HOH . E 4 HOH A 7 707 2118 HOH HOH . E 4 HOH A 8 708 2122 HOH HOH . E 4 HOH A 9 709 2081 HOH HOH . E 4 HOH A 10 710 2053 HOH HOH . E 4 HOH A 11 711 2142 HOH HOH . E 4 HOH A 12 712 2045 HOH HOH . E 4 HOH A 13 713 2139 HOH HOH . E 4 HOH A 14 714 2141 HOH HOH . E 4 HOH A 15 715 2068 HOH HOH . E 4 HOH A 16 716 2130 HOH HOH . E 4 HOH A 17 717 2054 HOH HOH . E 4 HOH A 18 718 2016 HOH HOH . E 4 HOH A 19 719 2108 HOH HOH . E 4 HOH A 20 720 2121 HOH HOH . E 4 HOH A 21 721 2004 HOH HOH . E 4 HOH A 22 722 2028 HOH HOH . E 4 HOH A 23 723 2094 HOH HOH . E 4 HOH A 24 724 2087 HOH HOH . E 4 HOH A 25 725 2091 HOH HOH . E 4 HOH A 26 726 2084 HOH HOH . E 4 HOH A 27 727 2082 HOH HOH . E 4 HOH A 28 728 2044 HOH HOH . E 4 HOH A 29 729 2001 HOH HOH . E 4 HOH A 30 730 2101 HOH HOH . E 4 HOH A 31 731 2070 HOH HOH . E 4 HOH A 32 732 2015 HOH HOH . E 4 HOH A 33 733 2066 HOH HOH . E 4 HOH A 34 734 2021 HOH HOH . E 4 HOH A 35 735 2073 HOH HOH . E 4 HOH A 36 736 2096 HOH HOH . E 4 HOH A 37 737 2029 HOH HOH . E 4 HOH A 38 738 2072 HOH HOH . E 4 HOH A 39 739 2119 HOH HOH . E 4 HOH A 40 740 2065 HOH HOH . E 4 HOH A 41 741 2056 HOH HOH . E 4 HOH A 42 742 2011 HOH HOH . E 4 HOH A 43 743 2027 HOH HOH . E 4 HOH A 44 744 2111 HOH HOH . E 4 HOH A 45 745 2007 HOH HOH . E 4 HOH A 46 746 2127 HOH HOH . E 4 HOH A 47 747 2133 HOH HOH . E 4 HOH A 48 748 2060 HOH HOH . E 4 HOH A 49 749 2050 HOH HOH . E 4 HOH A 50 750 2078 HOH HOH . E 4 HOH A 51 751 2061 HOH HOH . E 4 HOH A 52 752 2110 HOH HOH . E 4 HOH A 53 753 2136 HOH HOH . E 4 HOH A 54 754 2117 HOH HOH . E 4 HOH A 55 755 2098 HOH HOH . E 4 HOH A 56 756 2120 HOH HOH . E 4 HOH A 57 757 2079 HOH HOH . E 4 HOH A 58 758 2022 HOH HOH . E 4 HOH A 59 759 2093 HOH HOH . E 4 HOH A 60 760 2138 HOH HOH . E 4 HOH A 61 761 2040 HOH HOH . E 4 HOH A 62 762 2115 HOH HOH . E 4 HOH A 63 763 2135 HOH HOH . E 4 HOH A 64 764 2095 HOH HOH . E 4 HOH A 65 765 2105 HOH HOH . E 4 HOH A 66 766 2077 HOH HOH . E 4 HOH A 67 767 2103 HOH HOH . E 4 HOH A 68 768 2113 HOH HOH . E 4 HOH A 69 769 2047 HOH HOH . E 4 HOH A 70 770 2035 HOH HOH . E 4 HOH A 71 771 2042 HOH HOH . E 4 HOH A 72 772 2030 HOH HOH . E 4 HOH A 73 773 2013 HOH HOH . E 4 HOH A 74 774 2140 HOH HOH . E 4 HOH A 75 775 2129 HOH HOH . E 4 HOH A 76 776 2008 HOH HOH . E 4 HOH A 77 777 2064 HOH HOH . E 4 HOH A 78 778 2039 HOH HOH . E 4 HOH A 79 779 2080 HOH HOH . E 4 HOH A 80 780 2057 HOH HOH . E 4 HOH A 81 781 2102 HOH HOH . E 4 HOH A 82 782 2125 HOH HOH . E 4 HOH A 83 783 2034 HOH HOH . E 4 HOH A 84 784 2012 HOH HOH . E 4 HOH A 85 785 2025 HOH HOH . E 4 HOH A 86 786 2123 HOH HOH . E 4 HOH A 87 787 2104 HOH HOH . E 4 HOH A 88 788 2052 HOH HOH . E 4 HOH A 89 789 2128 HOH HOH . E 4 HOH A 90 790 2043 HOH HOH . E 4 HOH A 91 791 2069 HOH HOH . E 4 HOH A 92 792 2010 HOH HOH . E 4 HOH A 93 793 2116 HOH HOH . E 4 HOH A 94 794 2003 HOH HOH . E 4 HOH A 95 795 2055 HOH HOH . E 4 HOH A 96 796 2031 HOH HOH . E 4 HOH A 97 797 2107 HOH HOH . E 4 HOH A 98 798 2048 HOH HOH . E 4 HOH A 99 799 2020 HOH HOH . E 4 HOH A 100 800 2074 HOH HOH . E 4 HOH A 101 801 2005 HOH HOH . E 4 HOH A 102 802 2026 HOH HOH . E 4 HOH A 103 803 2124 HOH HOH . E 4 HOH A 104 804 2100 HOH HOH . E 4 HOH A 105 805 2089 HOH HOH . E 4 HOH A 106 806 2058 HOH HOH . E 4 HOH A 107 807 2076 HOH HOH . E 4 HOH A 108 808 2017 HOH HOH . E 4 HOH A 109 809 2092 HOH HOH . E 4 HOH A 110 810 2106 HOH HOH . E 4 HOH A 111 811 2037 HOH HOH . E 4 HOH A 112 812 2062 HOH HOH . E 4 HOH A 113 813 2046 HOH HOH . E 4 HOH A 114 814 2071 HOH HOH . E 4 HOH A 115 815 2002 HOH HOH . E 4 HOH A 116 816 2097 HOH HOH . E 4 HOH A 117 817 2033 HOH HOH . E 4 HOH A 118 818 2132 HOH HOH . E 4 HOH A 119 819 2075 HOH HOH . E 4 HOH A 120 820 2059 HOH HOH . E 4 HOH A 121 821 2114 HOH HOH . E 4 HOH A 122 822 2024 HOH HOH . E 4 HOH A 123 823 2063 HOH HOH . E 4 HOH A 124 824 2109 HOH HOH . E 4 HOH A 125 825 2083 HOH HOH . E 4 HOH A 126 826 2032 HOH HOH . E 4 HOH A 127 827 2131 HOH HOH . E 4 HOH A 128 828 2049 HOH HOH . E 4 HOH A 129 829 2006 HOH HOH . E 4 HOH A 130 830 2051 HOH HOH . E 4 HOH A 131 831 2099 HOH HOH . E 4 HOH A 132 832 2009 HOH HOH . E 4 HOH A 133 833 2018 HOH HOH . E 4 HOH A 134 834 2019 HOH HOH . E 4 HOH A 135 835 2036 HOH HOH . E 4 HOH A 136 836 2126 HOH HOH . E 4 HOH A 137 837 2086 HOH HOH . E 4 HOH A 138 838 2134 HOH HOH . E 4 HOH A 139 839 2090 HOH HOH . E 4 HOH A 140 840 2085 HOH HOH . E 4 HOH A 141 841 2023 HOH HOH . E 4 HOH A 142 842 2014 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . B 2 -18.639 82.778 49.973 1 73.78 ? C1 NAG 601 A 1 HETATM 2 C C2 NAG . . . B 2 -17.903 83.678 51.028 1 74 ? C2 NAG 601 A 1 HETATM 3 C C3 NAG . . . B 2 -18.796 84.837 51.514 1 76.14 ? C3 NAG 601 A 1 HETATM 4 C C4 NAG . . . B 2 -19.446 85.563 50.34 1 76.65 ? C4 NAG 601 A 1 HETATM 5 C C5 NAG . . . B 2 -20.158 84.557 49.427 1 76.01 ? C5 NAG 601 A 1 HETATM 6 C C6 NAG . . . B 2 -20.812 85.211 48.227 1 75.33 ? C6 NAG 601 A 1 HETATM 7 C C7 NAG . . . B 2 -18.155 82.831 53.317 1 71.54 ? C7 NAG 601 A 1 HETATM 8 C C8 NAG . . . B 2 -18.163 84.026 54.271 1 68.06 ? C8 NAG 601 A 1 HETATM 9 N N2 NAG . . . B 2 -17.447 82.908 52.182 1 73.58 ? N2 NAG 601 A 1 HETATM 10 O O3 NAG . . . B 2 -18.013 85.764 52.26 1 77.67 ? O3 NAG 601 A 1 HETATM 11 O O4 NAG . . . B 2 -20.372 86.522 50.834 1 77.69 ? O4 NAG 601 A 1 HETATM 12 O O5 NAG . . . B 2 -19.206 83.591 48.924 1 75.97 ? O5 NAG 601 A 1 HETATM 13 O O6 NAG . . . B 2 -20.808 84.344 47.104 1 72.58 ? O6 NAG 601 A 1 HETATM 14 O O7 NAG . . . B 2 -18.77 81.816 53.636 1 70.07 ? O7 NAG 601 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #