data_1GRT
#
_model_server_result.job_id            d1MVht61N8qGqUmv8oS0qw 
_model_server_result.datetime_utc      '2024-11-16 02:39:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1grt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":479}' 
#
_entry.id    1GRT 
#
_exptl.entry_id    1GRT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         58.7 
_cell.entry_id            1GRT 
_cell.length_a            119.8 
_cell.length_b            84.5 
_cell.length_c            63.2 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1GRT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'B 1 1 2' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 163.699365 72.201771 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 58 A CYS 58 1_555 A SG CYS 63 A CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
disulf ? disulf2 A SG CYS 90 A CYS 90 1_555 A SG CYS 90 A CYS 90 2_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     1GRT 
_atom_sites.fract_transf_matrix[1][1]    0.008347 
_atom_sites.fract_transf_matrix[1][2]    -0.005075 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01385 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015823 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          B 
_pdbx_nonpoly_scheme.entity_id        2 
_pdbx_nonpoly_scheme.mon_id           FAD 
_pdbx_nonpoly_scheme.pdb_strand_id    A 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      479 
_pdbx_nonpoly_scheme.auth_seq_num     479 
_pdbx_nonpoly_scheme.pdb_mon_id       FAD 
_pdbx_nonpoly_scheme.auth_mon_id      FAD 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . B 2 58.856 50.899 20.316 1 10.89 ? PA FAD 479 A 1 
HETATM 2 O O1A FAD . . . B 2 59.094 52.027 19.425 1 8.75 ? O1A FAD 479 A 1 
HETATM 3 O O2A FAD . . . B 2 59.293 49.566 19.827 1 9.97 ? O2A FAD 479 A 1 
HETATM 4 O O5B FAD . . . B 2 57.336 50.743 20.349 1 12.83 ? O5B FAD 479 A 1 
HETATM 5 C C5B FAD . . . B 2 56.193 51.557 20.603 1 13.61 ? C5B FAD 479 A 1 
HETATM 6 C C4B FAD . . . B 2 54.975 50.915 19.875 1 11.17 ? C4B FAD 479 A 1 
HETATM 7 O O4B FAD . . . B 2 53.857 51.65 20.39 1 10.27 ? O4B FAD 479 A 1 
HETATM 8 C C3B FAD . . . B 2 55.07 51.129 18.415 1 6.07 ? C3B FAD 479 A 1 
HETATM 9 O O3B FAD . . . B 2 54.917 50.057 17.552 1 11.31 ? O3B FAD 479 A 1 
HETATM 10 C C2B FAD . . . B 2 54.104 52.234 18.279 1 5.97 ? C2B FAD 479 A 1 
HETATM 11 O O2B FAD . . . B 2 53.483 52.136 17.084 1 6.89 ? O2B FAD 479 A 1 
HETATM 12 C C1B FAD . . . B 2 53.069 52.13 19.317 1 8.86 ? C1B FAD 479 A 1 
HETATM 13 N N9A FAD . . . B 2 52.404 53.398 19.751 1 9.04 ? N9A FAD 479 A 1 
HETATM 14 C C8A FAD . . . B 2 52.983 54.593 20.068 1 11.53 ? C8A FAD 479 A 1 
HETATM 15 N N7A FAD . . . B 2 52.216 55.464 20.722 1 9.82 ? N7A FAD 479 A 1 
HETATM 16 C C5A FAD . . . B 2 51.01 54.796 20.874 1 11.64 ? C5A FAD 479 A 1 
HETATM 17 C C6A FAD . . . B 2 49.759 55.209 21.471 1 9.7 ? C6A FAD 479 A 1 
HETATM 18 N N6A FAD . . . B 2 49.435 56.429 21.861 1 4.31 ? N6A FAD 479 A 1 
HETATM 19 N N1A FAD . . . B 2 48.769 54.303 21.362 1 12.15 ? N1A FAD 479 A 1 
HETATM 20 C C2A FAD . . . B 2 48.961 53.109 20.732 1 11.74 ? C2A FAD 479 A 1 
HETATM 21 N N3A FAD . . . B 2 50.097 52.606 20.246 1 11.75 ? N3A FAD 479 A 1 
HETATM 22 C C4A FAD . . . B 2 51.097 53.532 20.28 1 12.87 ? C4A FAD 479 A 1 
HETATM 23 N N1 FAD . . . B 2 68.1 48.709 19.424 1 7.16 ? N1 FAD 479 A 1 
HETATM 24 C C2 FAD . . . B 2 68.919 47.621 19.608 1 8.63 ? C2 FAD 479 A 1 
HETATM 25 O O2 FAD . . . B 2 69.031 46.958 20.605 1 7.15 ? O2 FAD 479 A 1 
HETATM 26 N N3 FAD . . . B 2 69.652 47.121 18.581 1 8.84 ? N3 FAD 479 A 1 
HETATM 27 C C4 FAD . . . B 2 69.635 47.57 17.368 1 11.6 ? C4 FAD 479 A 1 
HETATM 28 O O4 FAD . . . B 2 70.27 46.957 16.53 1 18.37 ? O4 FAD 479 A 1 
HETATM 29 C C4X FAD . . . B 2 68.766 48.731 17.103 1 5.9 ? C4X FAD 479 A 1 
HETATM 30 N N5 FAD . . . B 2 68.701 49.218 15.938 1 6.84 ? N5 FAD 479 A 1 
HETATM 31 C C5X FAD . . . B 2 67.907 50.288 15.639 1 3.64 ? C5X FAD 479 A 1 
HETATM 32 C C6 FAD . . . B 2 68.028 50.752 14.322 1 2 ? C6 FAD 479 A 1 
HETATM 33 C C7 FAD . . . B 2 67.334 51.836 13.873 1 2 ? C7 FAD 479 A 1 
HETATM 34 C C7M FAD . . . B 2 67.596 52.171 12.988 1 2 ? C7M FAD 479 A 1 
HETATM 35 C C8 FAD . . . B 2 66.411 52.504 14.785 1 2.59 ? C8 FAD 479 A 1 
HETATM 36 C C8M FAD . . . B 2 65.841 53.286 14.511 1 2 ? C8M FAD 479 A 1 
HETATM 37 C C9 FAD . . . B 2 66.326 52.018 16.167 1 2 ? C9 FAD 479 A 1 
HETATM 38 C C9A FAD . . . B 2 67.097 50.895 16.608 1 5.33 ? C9A FAD 479 A 1 
HETATM 39 N N10 FAD . . . B 2 67.225 50.285 17.964 1 5.36 ? N10 FAD 479 A 1 
HETATM 40 C C10 FAD . . . B 2 68.045 49.223 18.221 1 5.56 ? C10 FAD 479 A 1 
HETATM 41 C C1' FAD . . . B 2 66.551 50.762 19.216 1 6.15 ? C1' FAD 479 A 1 
HETATM 42 C C2' FAD . . . B 2 65.326 49.921 19.467 1 6.61 ? C2' FAD 479 A 1 
HETATM 43 O O2' FAD . . . B 2 64.628 49.934 18.251 1 2 ? O2' FAD 479 A 1 
HETATM 44 C C3' FAD . . . B 2 64.406 50.641 20.428 1 8.64 ? C3' FAD 479 A 1 
HETATM 45 O O3' FAD . . . B 2 65.083 50.796 21.628 1 12.61 ? O3' FAD 479 A 1 
HETATM 46 C C4' FAD . . . B 2 63.253 49.803 20.77 1 5.31 ? C4' FAD 479 A 1 
HETATM 47 O O4' FAD . . . B 2 62.578 49.897 19.606 1 2 ? O4' FAD 479 A 1 
HETATM 48 C C5' FAD . . . B 2 62.547 50.478 21.956 1 7.88 ? C5' FAD 479 A 1 
HETATM 49 O O5' FAD . . . B 2 61.228 49.994 22.323 1 7.4 ? O5' FAD 479 A 1 
HETATM 50 P P FAD . . . B 2 60.004 50.753 22.996 1 4.63 ? P FAD 479 A 1 
HETATM 51 O O1P FAD . . . B 2 59.298 49.701 23.766 1 10.13 ? O1P FAD 479 A 1 
HETATM 52 O O2P FAD . . . B 2 60.33 51.953 23.832 1 9.55 ? O2P FAD 479 A 1 
HETATM 53 O O3P FAD . . . B 2 59.294 51.268 21.742 1 2 ? O3P FAD 479 A 1 
#
_model_server_stats.io_time_ms              67 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           53 
#