data_1GSP
#
_model_server_result.job_id            t3ck3qaLuNUnuAROCfdW5g 
_model_server_result.datetime_utc      '2024-11-28 16:31:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1gsp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":105}' 
#
_entry.id    1GSP 
#
_exptl.entry_id    1GSP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              361.271 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-2',3'-CYCLOPHOSPHOROTHIOATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1GSP 
_cell.length_a            48.13 
_cell.length_b            51.02 
_cell.length_c            40.53 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1GSP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 2 A CYS 2 1_555 A SG CYS 10 A CYS 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf2 A SG CYS 6 A CYS 6 1_555 A SG CYS 103 A CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
metalc ? metalc1 A OD1 ASP 15 A ASP 15 1_555 B CA CA . A CA 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? 
metalc ? metalc2 A OD2 ASP 15 A ASP 15 1_555 B CA CA . A CA 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? 
metalc ? metalc3 B CA CA . A CA 106 1_555 D O HOH . A HOH 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? 
metalc ? metalc4 B CA CA . A CA 106 1_555 D O HOH . A HOH 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? 
metalc ? metalc5 B CA CA . A CA 106 1_555 D O HOH . A HOH 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? 
metalc ? metalc6 B CA CA . A CA 106 1_555 D O HOH . A HOH 153 2_574 ? ? ? ? ? ? ? ? ? ? ? ? 2.815 ? 
metalc ? metalc7 B CA CA . A CA 106 1_555 D O HOH . A HOH 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.828 ? 
#
_chem_comp.formula           'C10 H12 N5 O6 P S' 
_chem_comp.formula_weight    361.271 
_chem_comp.id                SGP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "GUANOSINE-2',3'-CYCLOPHOSPHOROTHIOATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P S1P SGP doub 271 n n 
P O1P SGP sing 272 n n 
P O3' SGP sing 273 n n 
P O2' SGP sing 274 n n 
O1P HOP1 SGP sing 275 n n 
O5' C5' SGP sing 276 n n 
O5' HO5' SGP sing 277 n n 
C5' C4' SGP sing 278 n n 
C5' "H5'1" SGP sing 279 n n 
C5' "H5'2" SGP sing 280 n n 
C4' O4' SGP sing 281 n n 
C4' C3' SGP sing 282 n n 
C4' H4' SGP sing 283 n n 
O4' C1' SGP sing 284 n n 
C3' O3' SGP sing 285 n n 
C3' C2' SGP sing 286 n n 
C3' H3' SGP sing 287 n n 
C2' O2' SGP sing 288 n n 
C2' C1' SGP sing 289 n n 
C2' H2' SGP sing 290 n n 
C1' N9 SGP sing 291 n n 
C1' H1' SGP sing 292 n n 
N9 C8 SGP sing 293 n y 
N9 C4 SGP sing 294 n y 
C8 N7 SGP doub 295 n y 
C8 H8 SGP sing 296 n n 
N7 C5 SGP sing 297 n y 
C5 C6 SGP sing 298 n n 
C5 C4 SGP doub 299 n y 
C6 O6 SGP doub 300 n n 
C6 N1 SGP sing 301 n n 
N1 C2 SGP sing 302 n n 
N1 HN1 SGP sing 303 n n 
C2 N2 SGP sing 304 n n 
C2 N3 SGP doub 305 n n 
N2 HN21 SGP sing 306 n n 
N2 HN22 SGP sing 307 n n 
N3 C4 SGP sing 308 n n 
#
_atom_sites.entry_id                     1GSP 
_atom_sites.fract_transf_matrix[1][1]    0.020777 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0196 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.024673 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 106 106 CA CA . 
C 3 SGP A 1 105 105 SGP SGP . 
D 4 HOH A 1 107 107 HOH HOH . 
D 4 HOH A 2 108 108 HOH HOH . 
D 4 HOH A 3 109 109 HOH HOH . 
D 4 HOH A 4 110 110 HOH HOH . 
D 4 HOH A 5 111 111 HOH HOH . 
D 4 HOH A 6 112 112 HOH HOH . 
D 4 HOH A 7 113 113 HOH HOH . 
D 4 HOH A 8 114 114 HOH HOH . 
D 4 HOH A 9 115 115 HOH HOH . 
D 4 HOH A 10 116 116 HOH HOH . 
D 4 HOH A 11 117 117 HOH HOH . 
D 4 HOH A 12 118 118 HOH HOH . 
D 4 HOH A 13 119 119 HOH HOH . 
D 4 HOH A 14 120 120 HOH HOH . 
D 4 HOH A 15 121 121 HOH HOH . 
D 4 HOH A 16 122 122 HOH HOH . 
D 4 HOH A 17 123 123 HOH HOH . 
D 4 HOH A 18 124 124 HOH HOH . 
D 4 HOH A 19 125 125 HOH HOH . 
D 4 HOH A 20 126 126 HOH HOH . 
D 4 HOH A 21 127 127 HOH HOH . 
D 4 HOH A 22 128 128 HOH HOH . 
D 4 HOH A 23 129 129 HOH HOH . 
D 4 HOH A 24 130 130 HOH HOH . 
D 4 HOH A 25 131 131 HOH HOH . 
D 4 HOH A 26 132 132 HOH HOH . 
D 4 HOH A 27 133 133 HOH HOH . 
D 4 HOH A 28 134 134 HOH HOH . 
D 4 HOH A 29 135 135 HOH HOH . 
D 4 HOH A 30 136 136 HOH HOH . 
D 4 HOH A 31 137 137 HOH HOH . 
D 4 HOH A 32 138 138 HOH HOH . 
D 4 HOH A 33 139 139 HOH HOH . 
D 4 HOH A 34 140 140 HOH HOH . 
D 4 HOH A 35 141 141 HOH HOH . 
D 4 HOH A 36 142 142 HOH HOH . 
D 4 HOH A 37 143 143 HOH HOH . 
D 4 HOH A 38 144 144 HOH HOH . 
D 4 HOH A 39 145 145 HOH HOH . 
D 4 HOH A 40 146 146 HOH HOH . 
D 4 HOH A 41 147 147 HOH HOH . 
D 4 HOH A 42 148 148 HOH HOH . 
D 4 HOH A 43 149 149 HOH HOH . 
D 4 HOH A 44 150 150 HOH HOH . 
D 4 HOH A 45 151 151 HOH HOH . 
D 4 HOH A 46 152 152 HOH HOH . 
D 4 HOH A 47 153 153 HOH HOH . 
D 4 HOH A 48 154 154 HOH HOH . 
D 4 HOH A 49 155 155 HOH HOH . 
D 4 HOH A 50 156 156 HOH HOH . 
D 4 HOH A 51 157 157 HOH HOH . 
D 4 HOH A 52 158 158 HOH HOH . 
D 4 HOH A 53 159 159 HOH HOH . 
D 4 HOH A 54 160 160 HOH HOH . 
D 4 HOH A 55 161 161 HOH HOH . 
D 4 HOH A 56 162 162 HOH HOH . 
D 4 HOH A 57 163 163 HOH HOH . 
D 4 HOH A 58 164 164 HOH HOH . 
D 4 HOH A 59 165 165 HOH HOH . 
D 4 HOH A 60 166 166 HOH HOH . 
D 4 HOH A 61 167 167 HOH HOH . 
D 4 HOH A 62 168 168 HOH HOH . 
D 4 HOH A 63 169 169 HOH HOH . 
D 4 HOH A 64 170 170 HOH HOH . 
D 4 HOH A 65 171 171 HOH HOH . 
D 4 HOH A 66 172 172 HOH HOH . 
D 4 HOH A 67 173 173 HOH HOH . 
D 4 HOH A 68 174 174 HOH HOH . 
D 4 HOH A 69 175 175 HOH HOH . 
D 4 HOH A 70 176 176 HOH HOH . 
D 4 HOH A 71 177 177 HOH HOH . 
D 4 HOH A 72 178 178 HOH HOH . 
D 4 HOH A 73 179 179 HOH HOH . 
D 4 HOH A 74 180 180 HOH HOH . 
D 4 HOH A 75 181 181 HOH HOH . 
D 4 HOH A 76 182 182 HOH HOH . 
D 4 HOH A 77 183 183 HOH HOH . 
D 4 HOH A 78 184 184 HOH HOH . 
D 4 HOH A 79 185 185 HOH HOH . 
D 4 HOH A 80 186 186 HOH HOH . 
D 4 HOH A 81 187 187 HOH HOH . 
D 4 HOH A 82 188 188 HOH HOH . 
D 4 HOH A 83 189 189 HOH HOH . 
D 4 HOH A 84 190 190 HOH HOH . 
D 4 HOH A 85 191 191 HOH HOH . 
D 4 HOH A 86 192 192 HOH HOH . 
D 4 HOH A 87 193 193 HOH HOH . 
D 4 HOH A 88 194 194 HOH HOH . 
D 4 HOH A 89 195 195 HOH HOH . 
D 4 HOH A 90 196 196 HOH HOH . 
D 4 HOH A 91 197 197 HOH HOH . 
D 4 HOH A 92 198 198 HOH HOH . 
D 4 HOH A 93 199 199 HOH HOH . 
D 4 HOH A 94 200 200 HOH HOH . 
D 4 HOH A 95 201 201 HOH HOH . 
D 4 HOH A 96 202 202 HOH HOH . 
D 4 HOH A 97 203 203 HOH HOH . 
D 4 HOH A 98 204 204 HOH HOH . 
D 4 HOH A 99 205 205 HOH HOH . 
D 4 HOH A 100 206 206 HOH HOH . 
D 4 HOH A 101 207 207 HOH HOH . 
D 4 HOH A 102 208 208 HOH HOH . 
D 4 HOH A 103 209 209 HOH HOH . 
D 4 HOH A 104 210 210 HOH HOH . 
D 4 HOH A 105 211 211 HOH HOH . 
D 4 HOH A 106 212 212 HOH HOH . 
D 4 HOH A 107 213 213 HOH HOH . 
D 4 HOH A 108 214 214 HOH HOH . 
D 4 HOH A 109 215 215 HOH HOH . 
D 4 HOH A 110 216 216 HOH HOH . 
D 4 HOH A 111 217 217 HOH HOH . 
D 4 HOH A 112 218 218 HOH HOH . 
D 4 HOH A 113 219 219 HOH HOH . 
D 4 HOH A 114 220 220 HOH HOH . 
D 4 HOH A 115 221 221 HOH HOH . 
D 4 HOH A 116 222 222 HOH HOH . 
D 4 HOH A 117 223 223 HOH HOH . 
D 4 HOH A 118 224 224 HOH HOH . 
D 4 HOH A 119 225 225 HOH HOH . 
D 4 HOH A 120 226 226 HOH HOH . 
D 4 HOH A 121 227 227 HOH HOH . 
D 4 HOH A 122 228 228 HOH HOH . 
D 4 HOH A 123 229 229 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P SGP . . . C 3 20.909 37.065 19.26 1 38.32 ? P SGP 105 A 1 
HETATM 2 S S1P SGP . . . C 3 20.004 38.587 18.641 1 32.04 ? S1P SGP 105 A 1 
HETATM 3 O O1P SGP . . . C 3 22.193 37.099 18.51 1 30.61 ? O1P SGP 105 A 1 
HETATM 4 O O5' SGP . . . C 3 19.388 36.475 23.763 1 33.32 ? O5' SGP 105 A 1 
HETATM 5 C C5' SGP . . . C 3 20.682 35.77 23.752 1 38.72 ? C5' SGP 105 A 1 
HETATM 6 C C4' SGP . . . C 3 20.942 35.049 22.427 1 47.24 ? C4' SGP 105 A 1 
HETATM 7 O O4' SGP . . . C 3 20.159 33.874 22.213 1 32.23 ? O4' SGP 105 A 1 
HETATM 8 C C3' SGP . . . C 3 20.392 36.034 21.407 1 30 ? C3' SGP 105 A 1 
HETATM 9 O O3' SGP . . . C 3 21.438 36.865 20.794 1 36.35 ? O3' SGP 105 A 1 
HETATM 10 C C2' SGP . . . C 3 19.658 35.214 20.337 1 31.82 ? C2' SGP 105 A 1 
HETATM 11 O O2' SGP . . . C 3 20.402 35.445 19.123 1 34.67 ? O2' SGP 105 A 1 
HETATM 12 C C1' SGP . . . C 3 19.644 33.786 20.872 1 30.31 ? C1' SGP 105 A 1 
HETATM 13 N N9 SGP . . . C 3 18.237 33.3 20.878 1 32.72 ? N9 SGP 105 A 1 
HETATM 14 C C8 SGP . . . C 3 17.745 32.183 20.266 1 28.8 ? C8 SGP 105 A 1 
HETATM 15 N N7 SGP . . . C 3 16.46 32.004 20.384 1 23.55 ? N7 SGP 105 A 1 
HETATM 16 C C5 SGP . . . C 3 16.044 33.093 21.144 1 25.14 ? C5 SGP 105 A 1 
HETATM 17 C C6 SGP . . . C 3 14.737 33.466 21.594 1 24.13 ? C6 SGP 105 A 1 
HETATM 18 O O6 SGP . . . C 3 13.693 32.854 21.392 1 23.99 ? O6 SGP 105 A 1 
HETATM 19 N N1 SGP . . . C 3 14.739 34.636 22.317 1 22.4 ? N1 SGP 105 A 1 
HETATM 20 C C2 SGP . . . C 3 15.865 35.384 22.592 1 24.5 ? C2 SGP 105 A 1 
HETATM 21 N N2 SGP . . . C 3 15.731 36.49 23.34 1 22.09 ? N2 SGP 105 A 1 
HETATM 22 N N3 SGP . . . C 3 17.08 35.035 22.17 1 23.41 ? N3 SGP 105 A 1 
HETATM 23 C C4 SGP . . . C 3 17.112 33.898 21.46 1 26.21 ? C4 SGP 105 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           23 
#