data_1GSQ # _model_server_result.job_id zJPKSZlVNQ6NsPSwEgFZvg _model_server_result.datetime_utc '2024-11-22 05:39:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1gsq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":203}' # _entry.id 1GSQ # _exptl.entry_id 1GSQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 473.415 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'GLUTATHIONE S-(2,4 DINITROBENZENE)' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1GSQ _cell.length_a 72.76 _cell.length_b 72.76 _cell.length_c 94.63 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GSQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H19 N5 O10 S' _chem_comp.formula_weight 473.415 _chem_comp.id GDN _chem_comp.mon_nstd_flag . _chem_comp.name 'GLUTATHIONE S-(2,4 DINITROBENZENE)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 CA1 GDN sing 83 n n N1 HN1 GDN sing 84 n n N1 HN2A GDN sing 85 n n CA1 C1 GDN sing 86 n n CA1 CB1 GDN sing 87 n n CA1 HA1 GDN sing 88 n n C1 O11 GDN doub 89 n n C1 O12 GDN sing 90 n n O12 H12 GDN sing 91 n n CB1 CG1 GDN sing 92 n n CB1 HB11 GDN sing 93 n n CB1 HB12 GDN sing 94 n n CG1 CD1 GDN sing 95 n n CG1 HG11 GDN sing 96 n n CG1 HG12 GDN sing 97 n n CD1 OE1 GDN doub 98 n n CD1 N2 GDN sing 99 n n N2 CA2 GDN sing 100 n n N2 HN2 GDN sing 101 n n CA2 C2 GDN sing 102 n n CA2 CB2 GDN sing 103 n n CA2 HA2 GDN sing 104 n n C2 O2 GDN doub 105 n n C2 N3 GDN sing 106 n n CB2 SG2 GDN sing 107 n n CB2 HB21 GDN sing 108 n n CB2 HB22 GDN sing 109 n n SG2 C1' GDN sing 110 n n N3 CA3 GDN sing 111 n n N3 HN3 GDN sing 112 n n CA3 C3 GDN sing 113 n n CA3 HA31 GDN sing 114 n n CA3 HA32 GDN sing 115 n n C3 O31 GDN doub 116 n n C3 O32 GDN sing 117 n n O32 H32 GDN sing 118 n n C1' C2' GDN doub 119 n y C1' C6' GDN sing 120 n y C2' C3' GDN sing 121 n y C2' N2' GDN sing 122 n n C3' C4' GDN doub 123 n y C3' H3' GDN sing 124 n n C4' C5' GDN sing 125 n y C4' N4' GDN sing 126 n n C5' C6' GDN doub 127 n y C5' H5' GDN sing 128 n n C6' H6' GDN sing 129 n n N2' O2A GDN sing 130 n n N2' O2B GDN doub 131 n n N4' O4A GDN sing 132 n n N4' O4B GDN doub 133 n n # _atom_sites.entry_id 1GSQ _atom_sites.fract_transf_matrix[1][1] 0.013744 _atom_sites.fract_transf_matrix[1][2] 0.007935 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01587 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010567 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GDN A 1 203 203 GDN GDB . C 3 HOH A 1 301 301 HOH HOH . C 3 HOH A 2 302 302 HOH HOH . C 3 HOH A 3 303 303 HOH HOH . C 3 HOH A 4 304 304 HOH HOH . C 3 HOH A 5 305 305 HOH HOH . C 3 HOH A 6 306 306 HOH HOH . C 3 HOH A 7 307 307 HOH HOH . C 3 HOH A 8 308 308 HOH HOH . C 3 HOH A 9 309 309 HOH HOH . C 3 HOH A 10 310 310 HOH HOH . C 3 HOH A 11 311 311 HOH HOH . C 3 HOH A 12 312 312 HOH HOH . C 3 HOH A 13 313 313 HOH HOH . C 3 HOH A 14 314 314 HOH HOH . C 3 HOH A 15 315 315 HOH HOH . C 3 HOH A 16 316 316 HOH HOH . C 3 HOH A 17 317 317 HOH HOH . C 3 HOH A 18 318 318 HOH HOH . C 3 HOH A 19 319 319 HOH HOH . C 3 HOH A 20 320 320 HOH HOH . C 3 HOH A 21 321 321 HOH HOH . C 3 HOH A 22 322 322 HOH HOH . C 3 HOH A 23 323 323 HOH HOH . C 3 HOH A 24 324 324 HOH HOH . C 3 HOH A 25 325 325 HOH HOH . C 3 HOH A 26 326 326 HOH HOH . C 3 HOH A 27 327 327 HOH HOH . C 3 HOH A 28 328 328 HOH HOH . C 3 HOH A 29 329 329 HOH HOH . C 3 HOH A 30 330 330 HOH HOH . C 3 HOH A 31 331 331 HOH HOH . C 3 HOH A 32 332 332 HOH HOH . C 3 HOH A 33 333 333 HOH HOH . C 3 HOH A 34 334 334 HOH HOH . C 3 HOH A 35 335 335 HOH HOH . C 3 HOH A 36 336 336 HOH HOH . C 3 HOH A 37 337 337 HOH HOH . C 3 HOH A 38 338 338 HOH HOH . C 3 HOH A 39 339 339 HOH HOH . C 3 HOH A 40 340 340 HOH HOH . C 3 HOH A 41 341 341 HOH HOH . C 3 HOH A 42 342 342 HOH HOH . C 3 HOH A 43 343 343 HOH HOH . C 3 HOH A 44 344 344 HOH HOH . C 3 HOH A 45 345 345 HOH HOH . C 3 HOH A 46 346 346 HOH HOH . C 3 HOH A 47 347 347 HOH HOH . C 3 HOH A 48 348 348 HOH HOH . C 3 HOH A 49 349 349 HOH HOH . C 3 HOH A 50 350 350 HOH HOH . C 3 HOH A 51 351 351 HOH HOH . C 3 HOH A 52 352 352 HOH HOH . C 3 HOH A 53 353 353 HOH HOH . C 3 HOH A 54 354 354 HOH HOH . C 3 HOH A 55 355 355 HOH HOH . C 3 HOH A 56 356 356 HOH HOH . C 3 HOH A 57 357 357 HOH HOH . C 3 HOH A 58 358 358 HOH HOH . C 3 HOH A 59 359 359 HOH HOH . C 3 HOH A 60 360 360 HOH HOH . C 3 HOH A 61 361 361 HOH HOH . C 3 HOH A 62 362 362 HOH HOH . C 3 HOH A 63 363 363 HOH HOH . C 3 HOH A 64 364 364 HOH HOH . C 3 HOH A 65 365 365 HOH HOH . C 3 HOH A 66 366 366 HOH HOH . C 3 HOH A 67 367 367 HOH HOH . C 3 HOH A 68 368 368 HOH HOH . C 3 HOH A 69 369 369 HOH HOH . C 3 HOH A 70 370 370 HOH HOH . C 3 HOH A 71 371 371 HOH HOH . C 3 HOH A 72 372 372 HOH HOH . C 3 HOH A 73 373 373 HOH HOH . C 3 HOH A 74 374 374 HOH HOH . C 3 HOH A 75 375 375 HOH HOH . C 3 HOH A 76 376 376 HOH HOH . C 3 HOH A 77 377 377 HOH HOH . C 3 HOH A 78 378 378 HOH HOH . C 3 HOH A 79 379 379 HOH HOH . C 3 HOH A 80 380 380 HOH HOH . C 3 HOH A 81 381 381 HOH HOH . C 3 HOH A 82 382 382 HOH HOH . C 3 HOH A 83 383 383 HOH HOH . C 3 HOH A 84 384 384 HOH HOH . C 3 HOH A 85 385 385 HOH HOH . C 3 HOH A 86 386 386 HOH HOH . C 3 HOH A 87 387 387 HOH HOH . C 3 HOH A 88 388 388 HOH HOH . C 3 HOH A 89 389 389 HOH HOH . C 3 HOH A 90 390 390 HOH HOH . C 3 HOH A 91 391 391 HOH HOH . C 3 HOH A 92 392 392 HOH HOH . C 3 HOH A 93 393 393 HOH HOH . C 3 HOH A 94 394 394 HOH HOH . C 3 HOH A 95 395 395 HOH HOH . C 3 HOH A 96 396 396 HOH HOH . C 3 HOH A 97 397 397 HOH HOH . C 3 HOH A 98 398 398 HOH HOH . C 3 HOH A 99 399 399 HOH HOH . C 3 HOH A 100 400 400 HOH HOH . C 3 HOH A 101 401 401 HOH HOH . C 3 HOH A 102 402 402 HOH HOH . C 3 HOH A 103 403 403 HOH HOH . C 3 HOH A 104 404 404 HOH HOH . C 3 HOH A 105 405 405 HOH HOH . C 3 HOH A 106 406 406 HOH HOH . C 3 HOH A 107 407 407 HOH HOH . C 3 HOH A 108 408 408 HOH HOH . C 3 HOH A 109 409 409 HOH HOH . C 3 HOH A 110 410 410 HOH HOH . C 3 HOH A 111 411 411 HOH HOH . C 3 HOH A 112 412 412 HOH HOH . C 3 HOH A 113 413 413 HOH HOH . C 3 HOH A 114 414 414 HOH HOH . C 3 HOH A 115 415 415 HOH HOH . C 3 HOH A 116 416 416 HOH HOH . C 3 HOH A 117 417 417 HOH HOH . C 3 HOH A 118 418 418 HOH HOH . C 3 HOH A 119 419 419 HOH HOH . C 3 HOH A 120 420 420 HOH HOH . C 3 HOH A 121 421 421 HOH HOH . C 3 HOH A 122 422 422 HOH HOH . C 3 HOH A 123 423 423 HOH HOH . C 3 HOH A 124 424 424 HOH HOH . C 3 HOH A 125 425 425 HOH HOH . C 3 HOH A 126 426 426 HOH HOH . C 3 HOH A 127 427 427 HOH HOH . C 3 HOH A 128 428 428 HOH HOH . C 3 HOH A 129 429 429 HOH HOH . C 3 HOH A 130 430 430 HOH HOH . C 3 HOH A 131 431 431 HOH HOH . C 3 HOH A 132 432 432 HOH HOH . C 3 HOH A 133 433 433 HOH HOH . C 3 HOH A 134 434 434 HOH HOH . C 3 HOH A 135 435 435 HOH HOH . C 3 HOH A 136 436 436 HOH HOH . C 3 HOH A 137 437 437 HOH HOH . C 3 HOH A 138 438 438 HOH HOH . C 3 HOH A 139 439 439 HOH HOH . C 3 HOH A 140 440 440 HOH HOH . C 3 HOH A 141 441 441 HOH HOH . C 3 HOH A 142 442 442 HOH HOH . C 3 HOH A 143 443 443 HOH HOH . C 3 HOH A 144 444 444 HOH HOH . C 3 HOH A 145 445 445 HOH HOH . C 3 HOH A 146 446 446 HOH HOH . C 3 HOH A 147 447 447 HOH HOH . C 3 HOH A 148 448 448 HOH HOH . C 3 HOH A 149 449 449 HOH HOH . C 3 HOH A 150 450 450 HOH HOH . C 3 HOH A 151 451 451 HOH HOH . C 3 HOH A 152 452 452 HOH HOH . C 3 HOH A 153 453 453 HOH HOH . C 3 HOH A 154 454 454 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 GDN . . . B 2 14.398 35.274 5.531 1 35.04 ? N1 GDN 203 A 1 HETATM 2 C CA1 GDN . . . B 2 14.332 35.613 7.008 1 34.85 ? CA1 GDN 203 A 1 HETATM 3 C C1 GDN . . . B 2 15.681 35.945 7.552 1 34.84 ? C1 GDN 203 A 1 HETATM 4 O O11 GDN . . . B 2 15.96 36.721 8.438 1 34.79 ? O11 GDN 203 A 1 HETATM 5 O O12 GDN . . . B 2 16.578 35.178 6.8 1 34.69 ? O12 GDN 203 A 1 HETATM 6 C CB1 GDN . . . B 2 13.72 34.464 7.799 1 34.98 ? CB1 GDN 203 A 1 HETATM 7 C CG1 GDN . . . B 2 12.324 34.994 8.244 1 34.96 ? CG1 GDN 203 A 1 HETATM 8 C CD1 GDN . . . B 2 11.589 33.74 8.682 1 35.51 ? CD1 GDN 203 A 1 HETATM 9 O OE1 GDN . . . B 2 11.301 32.885 7.84 1 35.54 ? OE1 GDN 203 A 1 HETATM 10 N N2 GDN . . . B 2 11.374 33.765 9.995 1 36.15 ? N2 GDN 203 A 1 HETATM 11 C CA2 GDN . . . B 2 10.937 32.591 10.78 1 36.36 ? CA2 GDN 203 A 1 HETATM 12 C C2 GDN . . . B 2 9.869 33.153 11.717 1 36.13 ? C2 GDN 203 A 1 HETATM 13 O O2 GDN . . . B 2 10.288 33.813 12.649 1 36.1 ? O2 GDN 203 A 1 HETATM 14 C CB2 GDN . . . B 2 12.171 31.918 11.393 1 36.7 ? CB2 GDN 203 A 1 HETATM 15 S SG2 GDN . . . B 2 11.7 30.313 11.898 0.7 37.74 ? SG2 GDN 203 A 1 HETATM 16 N N3 GDN . . . B 2 8.612 33.161 11.389 1 35.96 ? N3 GDN 203 A 1 HETATM 17 C CA3 GDN . . . B 2 7.669 32.113 11.844 1 36.03 ? CA3 GDN 203 A 1 HETATM 18 C C3 GDN . . . B 2 6.277 32.679 11.839 1 36.13 ? C3 GDN 203 A 1 HETATM 19 O O31 GDN . . . B 2 6.015 33.663 11.092 1 36.34 ? O31 GDN 203 A 1 HETATM 20 O O32 GDN . . . B 2 5.266 32.253 12.622 1 36.12 ? O32 GDN 203 A 1 HETATM 21 C C1' GDN . . . B 2 11.702 29.115 10.668 0.7 37.17 ? C1' GDN 203 A 1 HETATM 22 C C2' GDN . . . B 2 12.765 28.29 10.373 0.7 37.27 ? C2' GDN 203 A 1 HETATM 23 C C3' GDN . . . B 2 12.642 27.353 9.357 0.7 37.43 ? C3' GDN 203 A 1 HETATM 24 C C4' GDN . . . B 2 11.403 27.214 8.652 0.7 37.59 ? C4' GDN 203 A 1 HETATM 25 C C5' GDN . . . B 2 10.317 28.064 8.984 0.7 37.34 ? C5' GDN 203 A 1 HETATM 26 C C6' GDN . . . B 2 10.449 28.989 9.984 0.7 37.13 ? C6' GDN 203 A 1 HETATM 27 N N2' GDN . . . B 2 14.058 28.314 11.001 0.7 37.36 ? N2' GDN 203 A 1 HETATM 28 O O2A GDN . . . B 2 14.22 28.826 12.127 0.7 37.28 ? O2A GDN 203 A 1 HETATM 29 O O2B GDN . . . B 2 14.994 27.812 10.334 0.7 37.26 ? O2B GDN 203 A 1 HETATM 30 N N4' GDN . . . B 2 11.308 26.261 7.63 0.7 37.78 ? N4' GDN 203 A 1 HETATM 31 O O4A GDN . . . B 2 12.305 25.536 7.34 0.7 37.84 ? O4A GDN 203 A 1 HETATM 32 O O4B GDN . . . B 2 10.216 26.121 6.993 0.7 38.07 ? O4B GDN 203 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 932 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 32 #