data_1GU8 # _model_server_result.job_id PvlgVz0TaupFOr0_por34g _model_server_result.datetime_utc '2024-12-21 18:29:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1gu8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 1GU8 # _exptl.entry_id 1GU8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1GU8 _cell.length_a 85.51 _cell.length_b 128.553 _cell.length_c 50.799 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GU8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 264 n n C1 C6 RET sing 265 n n C1 C16 RET sing 266 n n C1 C17 RET sing 267 n n C2 C3 RET sing 268 n n C2 H21 RET sing 269 n n C2 H22 RET sing 270 n n C3 C4 RET sing 271 n n C3 H31 RET sing 272 n n C3 H32 RET sing 273 n n C4 C5 RET sing 274 n n C4 H41 RET sing 275 n n C4 H42 RET sing 276 n n C5 C6 RET doub 277 n n C5 C18 RET sing 278 n n C6 C7 RET sing 279 n n C7 C8 RET doub 280 e n C7 H7 RET sing 281 n n C8 C9 RET sing 282 n n C8 H8 RET sing 283 n n C9 C10 RET doub 284 e n C9 C19 RET sing 285 n n C10 C11 RET sing 286 n n C10 H10 RET sing 287 n n C11 C12 RET doub 288 e n C11 H11 RET sing 289 n n C12 C13 RET sing 290 n n C12 H12 RET sing 291 n n C13 C14 RET doub 292 e n C13 C20 RET sing 293 n n C14 C15 RET sing 294 n n C14 H14 RET sing 295 n n C15 O1 RET doub 296 n n C15 H15 RET sing 297 n n C16 H161 RET sing 298 n n C16 H162 RET sing 299 n n C16 H163 RET sing 300 n n C17 H171 RET sing 301 n n C17 H172 RET sing 302 n n C17 H173 RET sing 303 n n C18 H181 RET sing 304 n n C18 H182 RET sing 305 n n C18 H183 RET sing 306 n n C19 H191 RET sing 307 n n C19 H192 RET sing 308 n n C19 H193 RET sing 309 n n C20 H201 RET sing 310 n n C20 H202 RET sing 311 n n C20 H203 RET sing 312 n n # _atom_sites.entry_id 1GU8 _atom_sites.fract_transf_matrix[1][1] 0.011694 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007779 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019685 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 300 300 RET RET . C 3 CL A 1 500 500 CL CL . D 4 HOH A 1 400 400 HOH HOH . D 4 HOH A 2 401 401 HOH HOH . D 4 HOH A 3 402 402 HOH HOH . D 4 HOH A 4 404 404 HOH HOH . D 4 HOH A 5 407 407 HOH HOH . D 4 HOH A 6 409 409 HOH HOH . D 4 HOH A 7 410 410 HOH HOH . D 4 HOH A 8 412 412 HOH HOH . D 4 HOH A 9 413 413 HOH HOH . D 4 HOH A 10 415 415 HOH HOH . D 4 HOH A 11 418 418 HOH HOH . D 4 HOH A 12 420 420 HOH HOH . D 4 HOH A 13 422 422 HOH HOH . D 4 HOH A 14 430 430 HOH HOH . D 4 HOH A 15 432 432 HOH HOH . D 4 HOH A 16 433 433 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . B 2 23.644 30.28 6.019 0.5 25.52 ? C1 RET 300 A 1 HETATM 2 C C2 RET . . . B 2 22.719 29.352 6.857 0.5 25.22 ? C2 RET 300 A 1 HETATM 3 C C3 RET . . . B 2 21.704 30.038 7.72 0.5 27.49 ? C3 RET 300 A 1 HETATM 4 C C4 RET . . . B 2 20.87 30.973 6.885 0.5 24.21 ? C4 RET 300 A 1 HETATM 5 C C5 RET . . . B 2 21.696 31.974 6.098 0.5 23.47 ? C5 RET 300 A 1 HETATM 6 C C6 RET . . . B 2 22.997 31.705 5.692 0.5 23.83 ? C6 RET 300 A 1 HETATM 7 C C7 RET . . . B 2 23.711 32.748 4.956 0.5 23.62 ? C7 RET 300 A 1 HETATM 8 C C8 RET . . . B 2 24.975 32.842 4.45 0.5 20.65 ? C8 RET 300 A 1 HETATM 9 C C9 RET . . . B 2 25.541 33.961 3.73 0.5 22.27 ? C9 RET 300 A 1 HETATM 10 C C10 RET . . . B 2 26.826 33.848 3.369 0.5 21.19 ? C10 RET 300 A 1 HETATM 11 C C11 RET . . . B 2 27.66 34.805 2.659 0.5 20.63 ? C11 RET 300 A 1 HETATM 12 C C12 RET . . . B 2 28.945 34.586 2.401 0.5 23.59 ? C12 RET 300 A 1 HETATM 13 C C13 RET . . . B 2 29.875 35.473 1.738 0.5 23.61 ? C13 RET 300 A 1 HETATM 14 C C14 RET . . . B 2 31.161 35.087 1.6 0.5 23.28 ? C14 RET 300 A 1 HETATM 15 C C15 RET . . . B 2 32.2 35.803 1.006 0.5 26.12 ? C15 RET 300 A 1 HETATM 16 C C16 RET . . . B 2 24.919 30.401 6.883 0.5 25.27 ? C16 RET 300 A 1 HETATM 17 C C17 RET . . . B 2 23.979 29.52 4.705 0.5 24.23 ? C17 RET 300 A 1 HETATM 18 C C18 RET . . . B 2 20.949 33.256 5.848 0.5 21.04 ? C18 RET 300 A 1 HETATM 19 C C19 RET . . . B 2 24.692 35.174 3.424 0.5 18.91 ? C19 RET 300 A 1 HETATM 20 C C20 RET . . . B 2 29.374 36.835 1.234 0.5 21.49 ? C20 RET 300 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 599 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #