data_1GUA
#
_model_server_result.job_id            NolqYvwNH2CbrkvIDTRyMw 
_model_server_result.datetime_utc      '2024-11-23 23:53:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1gua 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":170}' 
#
_entry.id    1GUA 
#
_exptl.entry_id    1GUA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              522.196 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1GUA 
_cell.length_a            44.5 
_cell.length_b            71.8 
_cell.length_c            100.3 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1GUA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 17 A SER 17 1_555 C MG MG . A MG 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? 
metalc ? metalc2 A OG1 THR 35 A THR 35 1_555 C MG MG . A MG 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? 
metalc ? metalc3 D O3G GNP . A GNP 170 1_555 C MG MG . A MG 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? 
metalc ? metalc4 D O2B GNP . A GNP 170 1_555 C MG MG . A MG 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? 
metalc ? metalc5 C MG MG . A MG 171 1_555 F O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? 
metalc ? metalc6 C MG MG . A MG 171 1_555 F O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? 
metalc ? metalc7 B OD1 ASP 30 B ASP 80 4_556 E CA CA . B CA 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? 
metalc ? metalc8 B OD2 ASP 30 B ASP 80 4_556 E CA CA . B CA 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? 
metalc ? metalc9 B O GLY 73 B GLY 123 1_555 E CA CA . B CA 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? 
metalc ? metalc10 B OE2 GLU 75 B GLU 125 1_555 E CA CA . B CA 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.705 ? 
metalc ? metalc11 B OE1 GLU 75 B GLU 125 1_555 E CA CA . B CA 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? 
metalc ? metalc12 E CA CA . B CA 132 1_555 G O HOH . B HOH 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? 
metalc ? metalc13 E CA CA . B CA 132 1_555 G O HOH . B HOH 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? 
metalc ? metalc14 E CA CA . B CA 132 1_555 G O HOH . B HOH 574 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? 
#
_chem_comp.formula           'C10 H17 N6 O13 P3' 
_chem_comp.formula_weight    522.196 
_chem_comp.id                GNP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GNP doub 129 n n 
PG O2G GNP sing 130 n n 
PG O3G GNP sing 131 n n 
PG N3B GNP sing 132 n n 
O2G HOG2 GNP sing 133 n n 
O3G HOG3 GNP sing 134 n n 
N3B PB GNP sing 135 n n 
N3B HNB3 GNP sing 136 n n 
PB O1B GNP doub 137 n n 
PB O2B GNP sing 138 n n 
PB O3A GNP sing 139 n n 
O2B HOB2 GNP sing 140 n n 
O3A PA GNP sing 141 n n 
PA O1A GNP doub 142 n n 
PA O2A GNP sing 143 n n 
PA O5' GNP sing 144 n n 
O2A HOA2 GNP sing 145 n n 
O5' C5' GNP sing 146 n n 
C5' C4' GNP sing 147 n n 
C5' "H5'2" GNP sing 148 n n 
C5' "H5'1" GNP sing 149 n n 
C4' O4' GNP sing 150 n n 
C4' C3' GNP sing 151 n n 
C4' H4' GNP sing 152 n n 
O4' C1' GNP sing 153 n n 
C3' O3' GNP sing 154 n n 
C3' C2' GNP sing 155 n n 
C3' H3' GNP sing 156 n n 
O3' HO3' GNP sing 157 n n 
C2' O2' GNP sing 158 n n 
C2' C1' GNP sing 159 n n 
C2' H2' GNP sing 160 n n 
O2' HO2' GNP sing 161 n n 
C1' N9 GNP sing 162 n n 
C1' H1' GNP sing 163 n n 
N9 C8 GNP sing 164 n y 
N9 C4 GNP sing 165 n y 
C8 N7 GNP doub 166 n y 
C8 H8 GNP sing 167 n n 
N7 C5 GNP sing 168 n y 
C5 C6 GNP sing 169 n y 
C5 C4 GNP doub 170 n y 
C6 O6 GNP doub 171 n n 
C6 N1 GNP sing 172 n y 
N1 C2 GNP sing 173 n y 
N1 HN1 GNP sing 174 n n 
C2 N2 GNP sing 175 n n 
C2 N3 GNP doub 176 n y 
N2 HN21 GNP sing 177 n n 
N2 HN22 GNP sing 178 n n 
N3 C4 GNP sing 179 n y 
#
_atom_sites.entry_id                     1GUA 
_atom_sites.fract_transf_matrix[1][1]    0.022472 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013928 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00997 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 MG A 1 171 171 MG MG . 
D 4 GNP A 1 170 170 GNP GNP . 
E 5 CA B 1 132 132 CA CA . 
F 6 HOH A 1 501 501 HOH HOH . 
F 6 HOH A 2 502 502 HOH HOH . 
F 6 HOH A 3 503 503 HOH HOH . 
F 6 HOH A 4 504 504 HOH HOH . 
F 6 HOH A 5 505 505 HOH HOH . 
F 6 HOH A 6 511 511 HOH HOH . 
F 6 HOH A 7 512 512 HOH HOH . 
F 6 HOH A 8 513 513 HOH HOH . 
F 6 HOH A 9 521 521 HOH HOH . 
F 6 HOH A 10 522 522 HOH HOH . 
F 6 HOH A 11 523 523 HOH HOH . 
F 6 HOH A 12 524 524 HOH HOH . 
F 6 HOH A 13 525 525 HOH HOH . 
F 6 HOH A 14 526 526 HOH HOH . 
F 6 HOH A 15 532 532 HOH HOH . 
F 6 HOH A 16 533 533 HOH HOH . 
F 6 HOH A 17 534 534 HOH HOH . 
F 6 HOH A 18 535 535 HOH HOH . 
F 6 HOH A 19 536 536 HOH HOH . 
F 6 HOH A 20 537 537 HOH HOH . 
F 6 HOH A 21 538 538 HOH HOH . 
F 6 HOH A 22 539 539 HOH HOH . 
F 6 HOH A 23 540 540 HOH HOH . 
F 6 HOH A 24 541 541 HOH HOH . 
F 6 HOH A 25 542 542 HOH HOH . 
F 6 HOH A 26 544 544 HOH HOH . 
F 6 HOH A 27 545 545 HOH HOH . 
F 6 HOH A 28 546 546 HOH HOH . 
F 6 HOH A 29 547 547 HOH HOH . 
F 6 HOH A 30 550 550 HOH HOH . 
F 6 HOH A 31 551 551 HOH HOH . 
F 6 HOH A 32 552 552 HOH HOH . 
F 6 HOH A 33 553 553 HOH HOH . 
F 6 HOH A 34 554 554 HOH HOH . 
F 6 HOH A 35 555 555 HOH HOH . 
F 6 HOH A 36 556 556 HOH HOH . 
F 6 HOH A 37 557 557 HOH HOH . 
F 6 HOH A 38 566 566 HOH HOH . 
F 6 HOH A 39 567 567 HOH HOH . 
F 6 HOH A 40 568 568 HOH HOH . 
F 6 HOH A 41 569 569 HOH HOH . 
F 6 HOH A 42 570 570 HOH HOH . 
F 6 HOH A 43 572 572 HOH HOH . 
F 6 HOH A 44 573 573 HOH HOH . 
F 6 HOH A 45 575 575 HOH HOH . 
F 6 HOH A 46 577 577 HOH HOH . 
F 6 HOH A 47 578 578 HOH HOH . 
F 6 HOH A 48 579 579 HOH HOH . 
F 6 HOH A 49 583 583 HOH HOH . 
F 6 HOH A 50 585 585 HOH HOH . 
F 6 HOH A 51 586 586 HOH HOH . 
G 6 HOH B 1 506 506 HOH HOH . 
G 6 HOH B 2 507 507 HOH HOH . 
G 6 HOH B 3 508 508 HOH HOH . 
G 6 HOH B 4 509 509 HOH HOH . 
G 6 HOH B 5 510 510 HOH HOH . 
G 6 HOH B 6 514 514 HOH HOH . 
G 6 HOH B 7 515 515 HOH HOH . 
G 6 HOH B 8 516 516 HOH HOH . 
G 6 HOH B 9 517 517 HOH HOH . 
G 6 HOH B 10 518 518 HOH HOH . 
G 6 HOH B 11 519 519 HOH HOH . 
G 6 HOH B 12 520 520 HOH HOH . 
G 6 HOH B 13 527 527 HOH HOH . 
G 6 HOH B 14 528 528 HOH HOH . 
G 6 HOH B 15 529 529 HOH HOH . 
G 6 HOH B 16 530 530 HOH HOH . 
G 6 HOH B 17 531 531 HOH HOH . 
G 6 HOH B 18 543 543 HOH HOH . 
G 6 HOH B 19 548 548 HOH HOH . 
G 6 HOH B 20 549 549 HOH HOH . 
G 6 HOH B 21 558 558 HOH HOH . 
G 6 HOH B 22 559 559 HOH HOH . 
G 6 HOH B 23 560 560 HOH HOH . 
G 6 HOH B 24 561 561 HOH HOH . 
G 6 HOH B 25 562 562 HOH HOH . 
G 6 HOH B 26 563 563 HOH HOH . 
G 6 HOH B 27 564 564 HOH HOH . 
G 6 HOH B 28 565 565 HOH HOH . 
G 6 HOH B 29 571 571 HOH HOH . 
G 6 HOH B 30 574 574 HOH HOH . 
G 6 HOH B 31 576 576 HOH HOH . 
G 6 HOH B 32 580 580 HOH HOH . 
G 6 HOH B 33 581 581 HOH HOH . 
G 6 HOH B 34 582 582 HOH HOH . 
G 6 HOH B 35 584 584 HOH HOH . 
G 6 HOH B 36 587 587 HOH HOH . 
G 6 HOH B 37 588 588 HOH HOH . 
G 6 HOH B 38 589 589 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GNP . . . D 4 1.177 27.591 32.183 1 11.26 ? PG GNP 170 A 1 
HETATM 2 O O1G GNP . . . D 4 2.56 27.522 32.104 1 8.86 ? O1G GNP 170 A 1 
HETATM 3 O O2G GNP . . . D 4 0.708 28.515 33.185 1 9.11 ? O2G GNP 170 A 1 
HETATM 4 O O3G GNP . . . D 4 0.889 26.245 32.873 1 8.39 ? O3G GNP 170 A 1 
HETATM 5 N N3B GNP . . . D 4 0.346 27.509 30.817 1 9.05 ? N3B GNP 170 A 1 
HETATM 6 P PB GNP . . . D 4 0.484 26.457 29.501 1 8.71 ? PB GNP 170 A 1 
HETATM 7 O O1B GNP . . . D 4 1.595 26.701 28.613 1 5.8 ? O1B GNP 170 A 1 
HETATM 8 O O2B GNP . . . D 4 0.42 25.053 29.91 1 9.12 ? O2B GNP 170 A 1 
HETATM 9 O O3A GNP . . . D 4 -0.828 26.664 28.725 1 7.57 ? O3A GNP 170 A 1 
HETATM 10 P PA GNP . . . D 4 -2.145 25.943 28.66 1 10.37 ? PA GNP 170 A 1 
HETATM 11 O O1A GNP . . . D 4 -2.948 26.043 29.844 1 10.46 ? O1A GNP 170 A 1 
HETATM 12 O O2A GNP . . . D 4 -2.016 24.636 28.09 1 9.2 ? O2A GNP 170 A 1 
HETATM 13 O O5' GNP . . . D 4 -2.913 26.755 27.652 1 9.72 ? O5' GNP 170 A 1 
HETATM 14 C C5' GNP . . . D 4 -3.274 28.163 27.818 1 10.91 ? C5' GNP 170 A 1 
HETATM 15 C C4' GNP . . . D 4 -4.51 28.48 27.074 1 11.11 ? C4' GNP 170 A 1 
HETATM 16 O O4' GNP . . . D 4 -4.326 28.413 25.63 1 12.23 ? O4' GNP 170 A 1 
HETATM 17 C C3' GNP . . . D 4 -5.65 27.554 27.338 1 11.73 ? C3' GNP 170 A 1 
HETATM 18 O O3' GNP . . . D 4 -6.876 28.27 27.328 1 11.77 ? O3' GNP 170 A 1 
HETATM 19 C C2' GNP . . . D 4 -5.683 26.629 26.163 1 12.31 ? C2' GNP 170 A 1 
HETATM 20 O O2' GNP . . . D 4 -6.969 26.11 25.872 1 11.55 ? O2' GNP 170 A 1 
HETATM 21 C C1' GNP . . . D 4 -5.288 27.5 25.05 1 11.81 ? C1' GNP 170 A 1 
HETATM 22 N N9 GNP . . . D 4 -4.676 26.653 23.974 1 13.15 ? N9 GNP 170 A 1 
HETATM 23 C C8 GNP . . . D 4 -3.642 25.754 24.042 1 12.33 ? C8 GNP 170 A 1 
HETATM 24 N N7 GNP . . . D 4 -3.185 25.309 22.932 1 12.64 ? N7 GNP 170 A 1 
HETATM 25 C C5 GNP . . . D 4 -3.98 25.933 22.03 1 12.06 ? C5 GNP 170 A 1 
HETATM 26 C C6 GNP . . . D 4 -3.979 25.85 20.676 1 12.27 ? C6 GNP 170 A 1 
HETATM 27 O O6 GNP . . . D 4 -3.18 25.195 20.019 1 13.4 ? O6 GNP 170 A 1 
HETATM 28 N N1 GNP . . . D 4 -4.936 26.554 20.074 1 10.82 ? N1 GNP 170 A 1 
HETATM 29 C C2 GNP . . . D 4 -5.76 27.397 20.703 1 11.48 ? C2 GNP 170 A 1 
HETATM 30 N N2 GNP . . . D 4 -6.733 28.008 20.077 1 12.12 ? N2 GNP 170 A 1 
HETATM 31 N N3 GNP . . . D 4 -5.775 27.529 21.989 1 12.39 ? N3 GNP 170 A 1 
HETATM 32 C C4 GNP . . . D 4 -4.846 26.791 22.614 1 12.84 ? C4 GNP 170 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           32 
#