data_1GUL # _model_server_result.job_id oovT9jrPTQINoN-BjEF4eg _model_server_result.datetime_utc '2024-10-28 15:27:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1gul # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":301}' # _entry.id 1GUL # _exptl.entry_id 1GUL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.343 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GAMMA-GLUTAMYL[S-(2-IODOBENZYL)CYSTEINYL]GLYCINE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1GUL _cell.length_a 155.3 _cell.length_b 156.1 _cell.length_c 101.3 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GUL _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 PISA tetrameric 4 author_and_software_defined_assembly 3 PISA tetrameric 4 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,I,J,Q,R 1 1 C,D,K,L,S,T 2 1 E,F,M,N,U,V 3 1 G,H,O,P,W,X 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N # _chem_comp.formula 'C17 H22 I N3 O6 S' _chem_comp.formula_weight 523.343 _chem_comp.id IBG _chem_comp.mon_nstd_flag . _chem_comp.name GAMMA-GLUTAMYL[S-(2-IODOBENZYL)CYSTEINYL]GLYCINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 CA1 IBG sing 139 n n N1 HN11 IBG sing 140 n n N1 HN12 IBG sing 141 n n CA1 C1 IBG sing 142 n n CA1 CB1 IBG sing 143 n n CA1 HA1C IBG sing 144 n n C1 O11 IBG doub 145 n n C1 O12 IBG sing 146 n n O12 H12 IBG sing 147 n n CB1 CG1 IBG sing 148 n n CB1 HCB1 IBG sing 149 n n CB1 HCB2 IBG sing 150 n n CG1 CD1 IBG sing 151 n n CG1 HCG1 IBG sing 152 n n CG1 HCG2 IBG sing 153 n n CD1 OE1 IBG doub 154 n n CD1 N2 IBG sing 155 n n N2 CA2 IBG sing 156 n n N2 HN2 IBG sing 157 n n CA2 C2 IBG sing 158 n n CA2 CB2 IBG sing 159 n n CA2 HA2C IBG sing 160 n n C2 O2 IBG doub 161 n n C2 N3 IBG sing 162 n n CB2 SG2 IBG sing 163 n n CB2 HB21 IBG sing 164 n n CB2 HB22 IBG sing 165 n n SG2 CS IBG sing 166 n n N3 CA3 IBG sing 167 n n N3 HN3 IBG sing 168 n n CA3 C3 IBG sing 169 n n CA3 HC31 IBG sing 170 n n CA3 HC32 IBG sing 171 n n C3 O31 IBG sing 172 n n C3 O32 IBG doub 173 n n O31 H31 IBG sing 174 n n CS C1S IBG sing 175 n n CS HCS1 IBG sing 176 n n CS HCS2 IBG sing 177 n n C1S C2S IBG doub 178 n y C1S C6S IBG sing 179 n y C2S C3S IBG sing 180 n y C2S I2S IBG sing 181 n n C3S C4S IBG doub 182 n y C3S H3S IBG sing 183 n n C4S C5S IBG sing 184 n y C4S H4S IBG sing 185 n n C5S C6S IBG doub 186 n y C5S H5S IBG sing 187 n n C6S H6S IBG sing 188 n n # _atom_sites.entry_id 1GUL _atom_sites.fract_transf_matrix[1][1] 0.006439 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006406 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009872 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 IBG A 1 301 231 IBG GGL . J 2 IBG B 1 301 231 IBG GGL . K 2 IBG C 1 301 231 IBG GGL . L 2 IBG D 1 301 231 IBG GGL . M 2 IBG E 1 301 231 IBG GGL . N 2 IBG F 1 301 231 IBG GGL . O 2 IBG G 1 301 231 IBG GGL . P 2 IBG H 1 301 231 IBG GGL . Q 3 HOH A 1 401 1324 HOH HOH . Q 3 HOH A 2 402 1320 HOH HOH . Q 3 HOH A 3 403 1305 HOH HOH . Q 3 HOH A 4 404 1328 HOH HOH . Q 3 HOH A 5 405 1322 HOH HOH . Q 3 HOH A 6 406 1313 HOH HOH . Q 3 HOH A 7 407 1318 HOH HOH . Q 3 HOH A 8 408 1314 HOH HOH . Q 3 HOH A 9 409 1319 HOH HOH . Q 3 HOH A 10 410 1312 HOH HOH . Q 3 HOH A 11 411 1310 HOH HOH . Q 3 HOH A 12 412 1303 HOH HOH . Q 3 HOH A 13 413 1301 HOH HOH . Q 3 HOH A 14 414 1309 HOH HOH . Q 3 HOH A 15 415 1306 HOH HOH . Q 3 HOH A 16 416 1316 HOH HOH . Q 3 HOH A 17 417 1323 HOH HOH . Q 3 HOH A 18 418 1321 HOH HOH . Q 3 HOH A 19 419 1327 HOH HOH . Q 3 HOH A 20 420 1315 HOH HOH . Q 3 HOH A 21 421 1325 HOH HOH . Q 3 HOH A 22 422 1311 HOH HOH . Q 3 HOH A 23 423 1326 HOH HOH . Q 3 HOH A 24 424 1304 HOH HOH . Q 3 HOH A 25 425 1307 HOH HOH . Q 3 HOH A 26 426 1302 HOH HOH . Q 3 HOH A 27 427 1317 HOH HOH . R 3 HOH B 1 401 2324 HOH HOH . R 3 HOH B 2 402 2320 HOH HOH . R 3 HOH B 3 403 2305 HOH HOH . R 3 HOH B 4 404 2328 HOH HOH . R 3 HOH B 5 405 2322 HOH HOH . R 3 HOH B 6 406 2313 HOH HOH . R 3 HOH B 7 407 2318 HOH HOH . R 3 HOH B 8 408 2314 HOH HOH . R 3 HOH B 9 409 2319 HOH HOH . R 3 HOH B 10 410 2312 HOH HOH . R 3 HOH B 11 411 2310 HOH HOH . R 3 HOH B 12 412 2303 HOH HOH . R 3 HOH B 13 413 2301 HOH HOH . R 3 HOH B 14 414 2309 HOH HOH . R 3 HOH B 15 415 2306 HOH HOH . R 3 HOH B 16 416 2316 HOH HOH . R 3 HOH B 17 417 2323 HOH HOH . R 3 HOH B 18 418 2321 HOH HOH . R 3 HOH B 19 419 2327 HOH HOH . R 3 HOH B 20 420 2315 HOH HOH . R 3 HOH B 21 421 2325 HOH HOH . R 3 HOH B 22 422 2311 HOH HOH . R 3 HOH B 23 423 2326 HOH HOH . R 3 HOH B 24 424 2304 HOH HOH . R 3 HOH B 25 425 2307 HOH HOH . R 3 HOH B 26 426 2302 HOH HOH . R 3 HOH B 27 427 2317 HOH HOH . S 3 HOH C 1 401 3324 HOH HOH . S 3 HOH C 2 402 3320 HOH HOH . S 3 HOH C 3 403 3305 HOH HOH . S 3 HOH C 4 404 3328 HOH HOH . S 3 HOH C 5 405 3322 HOH HOH . S 3 HOH C 6 406 3313 HOH HOH . S 3 HOH C 7 407 3318 HOH HOH . S 3 HOH C 8 408 3314 HOH HOH . S 3 HOH C 9 409 3319 HOH HOH . S 3 HOH C 10 410 3312 HOH HOH . S 3 HOH C 11 411 3310 HOH HOH . S 3 HOH C 12 412 3303 HOH HOH . S 3 HOH C 13 413 3301 HOH HOH . S 3 HOH C 14 414 3309 HOH HOH . S 3 HOH C 15 415 3306 HOH HOH . S 3 HOH C 16 416 3316 HOH HOH . S 3 HOH C 17 417 3323 HOH HOH . S 3 HOH C 18 418 3321 HOH HOH . S 3 HOH C 19 419 3327 HOH HOH . S 3 HOH C 20 420 3315 HOH HOH . S 3 HOH C 21 421 3325 HOH HOH . S 3 HOH C 22 422 3311 HOH HOH . S 3 HOH C 23 423 3326 HOH HOH . S 3 HOH C 24 424 3304 HOH HOH . S 3 HOH C 25 425 3307 HOH HOH . S 3 HOH C 26 426 3302 HOH HOH . S 3 HOH C 27 427 3317 HOH HOH . T 3 HOH D 1 401 4324 HOH HOH . T 3 HOH D 2 402 4320 HOH HOH . T 3 HOH D 3 403 4305 HOH HOH . T 3 HOH D 4 404 4328 HOH HOH . T 3 HOH D 5 405 4322 HOH HOH . T 3 HOH D 6 406 4313 HOH HOH . T 3 HOH D 7 407 4318 HOH HOH . T 3 HOH D 8 408 4314 HOH HOH . T 3 HOH D 9 409 4319 HOH HOH . T 3 HOH D 10 410 4312 HOH HOH . T 3 HOH D 11 411 4310 HOH HOH . T 3 HOH D 12 412 4303 HOH HOH . T 3 HOH D 13 413 4301 HOH HOH . T 3 HOH D 14 414 4309 HOH HOH . T 3 HOH D 15 415 4306 HOH HOH . T 3 HOH D 16 416 4316 HOH HOH . T 3 HOH D 17 417 4323 HOH HOH . T 3 HOH D 18 418 4321 HOH HOH . T 3 HOH D 19 419 4327 HOH HOH . T 3 HOH D 20 420 4315 HOH HOH . T 3 HOH D 21 421 4325 HOH HOH . T 3 HOH D 22 422 4311 HOH HOH . T 3 HOH D 23 423 4326 HOH HOH . T 3 HOH D 24 424 4304 HOH HOH . T 3 HOH D 25 425 4307 HOH HOH . T 3 HOH D 26 426 4302 HOH HOH . T 3 HOH D 27 427 4317 HOH HOH . U 3 HOH E 1 401 5324 HOH HOH . U 3 HOH E 2 402 5320 HOH HOH . U 3 HOH E 3 403 5305 HOH HOH . U 3 HOH E 4 404 5328 HOH HOH . U 3 HOH E 5 405 5322 HOH HOH . U 3 HOH E 6 406 5313 HOH HOH . U 3 HOH E 7 407 5318 HOH HOH . U 3 HOH E 8 408 5314 HOH HOH . U 3 HOH E 9 409 5319 HOH HOH . U 3 HOH E 10 410 5312 HOH HOH . U 3 HOH E 11 411 5310 HOH HOH . U 3 HOH E 12 412 5303 HOH HOH . U 3 HOH E 13 413 5301 HOH HOH . U 3 HOH E 14 414 5309 HOH HOH . U 3 HOH E 15 415 5306 HOH HOH . U 3 HOH E 16 416 5316 HOH HOH . U 3 HOH E 17 417 5323 HOH HOH . U 3 HOH E 18 418 5321 HOH HOH . U 3 HOH E 19 419 5327 HOH HOH . U 3 HOH E 20 420 5315 HOH HOH . U 3 HOH E 21 421 5325 HOH HOH . U 3 HOH E 22 422 5311 HOH HOH . U 3 HOH E 23 423 5326 HOH HOH . U 3 HOH E 24 424 5304 HOH HOH . U 3 HOH E 25 425 5307 HOH HOH . U 3 HOH E 26 426 5302 HOH HOH . U 3 HOH E 27 427 5317 HOH HOH . V 3 HOH F 1 401 6324 HOH HOH . V 3 HOH F 2 402 6320 HOH HOH . V 3 HOH F 3 403 6305 HOH HOH . V 3 HOH F 4 404 6328 HOH HOH . V 3 HOH F 5 405 6322 HOH HOH . V 3 HOH F 6 406 6313 HOH HOH . V 3 HOH F 7 407 6318 HOH HOH . V 3 HOH F 8 408 6314 HOH HOH . V 3 HOH F 9 409 6319 HOH HOH . V 3 HOH F 10 410 6312 HOH HOH . V 3 HOH F 11 411 6310 HOH HOH . V 3 HOH F 12 412 6303 HOH HOH . V 3 HOH F 13 413 6301 HOH HOH . V 3 HOH F 14 414 6309 HOH HOH . V 3 HOH F 15 415 6306 HOH HOH . V 3 HOH F 16 416 6316 HOH HOH . V 3 HOH F 17 417 6323 HOH HOH . V 3 HOH F 18 418 6321 HOH HOH . V 3 HOH F 19 419 6327 HOH HOH . V 3 HOH F 20 420 6315 HOH HOH . V 3 HOH F 21 421 6325 HOH HOH . V 3 HOH F 22 422 6311 HOH HOH . V 3 HOH F 23 423 6326 HOH HOH . V 3 HOH F 24 424 6304 HOH HOH . V 3 HOH F 25 425 6307 HOH HOH . V 3 HOH F 26 426 6302 HOH HOH . V 3 HOH F 27 427 6317 HOH HOH . W 3 HOH G 1 401 7324 HOH HOH . W 3 HOH G 2 402 7320 HOH HOH . W 3 HOH G 3 403 7305 HOH HOH . W 3 HOH G 4 404 7328 HOH HOH . W 3 HOH G 5 405 7322 HOH HOH . W 3 HOH G 6 406 7313 HOH HOH . W 3 HOH G 7 407 7318 HOH HOH . W 3 HOH G 8 408 7314 HOH HOH . W 3 HOH G 9 409 7319 HOH HOH . W 3 HOH G 10 410 7312 HOH HOH . W 3 HOH G 11 411 7310 HOH HOH . W 3 HOH G 12 412 7303 HOH HOH . W 3 HOH G 13 413 7301 HOH HOH . W 3 HOH G 14 414 7309 HOH HOH . W 3 HOH G 15 415 7306 HOH HOH . W 3 HOH G 16 416 7316 HOH HOH . W 3 HOH G 17 417 7323 HOH HOH . W 3 HOH G 18 418 7321 HOH HOH . W 3 HOH G 19 419 7327 HOH HOH . W 3 HOH G 20 420 7315 HOH HOH . W 3 HOH G 21 421 7325 HOH HOH . W 3 HOH G 22 422 7311 HOH HOH . W 3 HOH G 23 423 7326 HOH HOH . W 3 HOH G 24 424 7304 HOH HOH . W 3 HOH G 25 425 7307 HOH HOH . W 3 HOH G 26 426 7302 HOH HOH . W 3 HOH G 27 427 7317 HOH HOH . X 3 HOH H 1 401 8324 HOH HOH . X 3 HOH H 2 402 8320 HOH HOH . X 3 HOH H 3 403 8305 HOH HOH . X 3 HOH H 4 404 8328 HOH HOH . X 3 HOH H 5 405 8322 HOH HOH . X 3 HOH H 6 406 8313 HOH HOH . X 3 HOH H 7 407 8318 HOH HOH . X 3 HOH H 8 408 8314 HOH HOH . X 3 HOH H 9 409 8319 HOH HOH . X 3 HOH H 10 410 8312 HOH HOH . X 3 HOH H 11 411 8310 HOH HOH . X 3 HOH H 12 412 8303 HOH HOH . X 3 HOH H 13 413 8301 HOH HOH . X 3 HOH H 14 414 8309 HOH HOH . X 3 HOH H 15 415 8306 HOH HOH . X 3 HOH H 16 416 8316 HOH HOH . X 3 HOH H 17 417 8323 HOH HOH . X 3 HOH H 18 418 8321 HOH HOH . X 3 HOH H 19 419 8327 HOH HOH . X 3 HOH H 20 420 8315 HOH HOH . X 3 HOH H 21 421 8325 HOH HOH . X 3 HOH H 22 422 8311 HOH HOH . X 3 HOH H 23 423 8326 HOH HOH . X 3 HOH H 24 424 8304 HOH HOH . X 3 HOH H 25 425 8307 HOH HOH . X 3 HOH H 26 426 8302 HOH HOH . X 3 HOH H 27 427 8317 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 IBG . . . I 2 19.923 -15.876 -44.023 1 37.15 ? N1 IBG 301 A 1 HETATM 2 C CA1 IBG . . . I 2 18.988 -16.178 -45.102 1 7.63 ? CA1 IBG 301 A 1 HETATM 3 C C1 IBG . . . I 2 18.292 -17.527 -44.941 1 7.03 ? C1 IBG 301 A 1 HETATM 4 O O11 IBG . . . I 2 17.088 -17.572 -45.334 1 19.4 ? O11 IBG 301 A 1 HETATM 5 O O12 IBG . . . I 2 18.897 -18.394 -44.239 1 43.52 ? O12 IBG 301 A 1 HETATM 6 C CB1 IBG . . . I 2 19.668 -16.01 -46.443 1 6.19 ? CB1 IBG 301 A 1 HETATM 7 C CG1 IBG . . . I 2 18.944 -16.637 -47.625 1 24.61 ? CG1 IBG 301 A 1 HETATM 8 C CD1 IBG . . . I 2 19.806 -16.437 -48.855 1 18.75 ? CD1 IBG 301 A 1 HETATM 9 O OE1 IBG . . . I 2 21.007 -16.189 -48.782 1 36.14 ? OE1 IBG 301 A 1 HETATM 10 N N2 IBG . . . I 2 19.179 -16.574 -50.007 1 39.29 ? N2 IBG 301 A 1 HETATM 11 C CA2 IBG . . . I 2 19.854 -16.391 -51.278 1 38.11 ? CA2 IBG 301 A 1 HETATM 12 C C2 IBG . . . I 2 18.911 -15.702 -52.248 1 29.74 ? C2 IBG 301 A 1 HETATM 13 O O2 IBG . . . I 2 17.662 -15.855 -52.242 1 26.16 ? O2 IBG 301 A 1 HETATM 14 C CB2 IBG . . . I 2 20.492 -17.696 -51.832 1 43.28 ? CB2 IBG 301 A 1 HETATM 15 S SG2 IBG . . . I 2 21.875 -18.352 -50.834 1 46.76 ? SG2 IBG 301 A 1 HETATM 16 N N3 IBG . . . I 2 19.497 -14.83 -53.034 1 27.44 ? N3 IBG 301 A 1 HETATM 17 C CA3 IBG . . . I 2 18.68 -14.069 -53.975 1 23.21 ? CA3 IBG 301 A 1 HETATM 18 C C3 IBG . . . I 2 19.334 -12.763 -54.335 1 26.89 ? C3 IBG 301 A 1 HETATM 19 O O31 IBG . . . I 2 18.973 -12.268 -55.438 1 47.64 ? O31 IBG 301 A 1 HETATM 20 O O32 IBG . . . I 2 20.224 -12.377 -53.51 1 83.82 ? O32 IBG 301 A 1 HETATM 21 C CS IBG . . . I 2 22.861 -19.25 -52.049 1 300 ? CS IBG 301 A 1 HETATM 22 C C1S IBG . . . I 2 24.008 -19.83 -51.281 1 300 ? C1S IBG 301 A 1 HETATM 23 C C2S IBG . . . I 2 23.934 -21.142 -50.795 1 5.69 ? C2S IBG 301 A 1 HETATM 24 C C3S IBG . . . I 2 25.024 -21.594 -50.049 1 31.59 ? C3S IBG 301 A 1 HETATM 25 I I2S IBG . . . I 2 22.359 -22.362 -51.461 1 90.26 ? I2S IBG 301 A 1 HETATM 26 C C4S IBG . . . I 2 26.096 -20.745 -49.739 1 15.35 ? C4S IBG 301 A 1 HETATM 27 C C5S IBG . . . I 2 26.093 -19.409 -50.134 1 300 ? C5S IBG 301 A 1 HETATM 28 C C6S IBG . . . I 2 25.027 -18.953 -50.905 1 300 ? C6S IBG 301 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 28 #