data_1GVM
#
_model_server_result.job_id            YRWa7t2Sk8Rto1l3B_isJA 
_model_server_result.datetime_utc      '2025-02-28 13:39:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1gvm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"AA","auth_seq_id":404}' 
#
_entry.id    1GVM 
#
_exptl.entry_id    1GVM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              201.349 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DECYLAMINE-N,N-DIMETHYL-N-OXIDE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          96.54 
_cell.angle_gamma         90 
_cell.entry_id            1GVM 
_cell.length_a            56.717 
_cell.length_b            85.39 
_cell.length_c            204.136 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 1GVM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS dimeric 2 author_and_software_defined_assembly 1 
PQS dimeric 2 author_and_software_defined_assembly 2 
PQS dimeric 2 author_and_software_defined_assembly 3 
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loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,G,H,I,J,K,L,M,N,CA,DA 1 1 
C,D,O,P,Q,R,S,T,U,EA,FA 2 1 
E,F,V,W,X,Y,Z,AA,BA,GA 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             AA 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C12 H27 N O' 
_chem_comp.formula_weight    201.349 
_chem_comp.id                DDQ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DECYLAMINE-N,N-DIMETHYL-N-OXIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 O1 DDQ sing 90 n n 
N1 CM1 DDQ sing 91 n n 
N1 CM2 DDQ sing 92 n n 
N1 C1 DDQ sing 93 n n 
CM1 HM11 DDQ sing 94 n n 
CM1 HM12 DDQ sing 95 n n 
CM1 HM13 DDQ sing 96 n n 
CM2 HM21 DDQ sing 97 n n 
CM2 HM22 DDQ sing 98 n n 
CM2 HM23 DDQ sing 99 n n 
C1 C2 DDQ sing 100 n n 
C1 H11 DDQ sing 101 n n 
C1 H12 DDQ sing 102 n n 
C2 C3 DDQ sing 103 n n 
C2 H21 DDQ sing 104 n n 
C2 H22 DDQ sing 105 n n 
C3 C4 DDQ sing 106 n n 
C3 H31 DDQ sing 107 n n 
C3 H32 DDQ sing 108 n n 
C4 C5 DDQ sing 109 n n 
C4 H41 DDQ sing 110 n n 
C4 H42 DDQ sing 111 n n 
C5 C6 DDQ sing 112 n n 
C5 H51 DDQ sing 113 n n 
C5 H52 DDQ sing 114 n n 
C6 C7 DDQ sing 115 n n 
C6 H61 DDQ sing 116 n n 
C6 H62 DDQ sing 117 n n 
C7 C8 DDQ sing 118 n n 
C7 H71 DDQ sing 119 n n 
C7 H72 DDQ sing 120 n n 
C8 C9 DDQ sing 121 n n 
C8 H81 DDQ sing 122 n n 
C8 H82 DDQ sing 123 n n 
C9 C10 DDQ sing 124 n n 
C9 H91 DDQ sing 125 n n 
C9 H92 DDQ sing 126 n n 
C10 H101 DDQ sing 127 n n 
C10 H102 DDQ sing 128 n n 
C10 H103 DDQ sing 129 n n 
#
_atom_sites.entry_id                     1GVM 
_atom_sites.fract_transf_matrix[1][1]    0.017631 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002021 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011711 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004931 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 CHT A 1 401 401 CHT CHT . 
H 2 CHT A 1 402 402 CHT CHT . 
I 2 CHT A 1 403 403 CHT CHT . 
J 2 CHT A 1 404 404 CHT CHT . 
K 2 CHT B 1 401 401 CHT CHT . 
L 2 CHT B 1 402 402 CHT CHT . 
M 2 CHT B 1 403 403 CHT CHT . 
N 2 CHT B 1 404 404 CHT CHT . 
O 2 CHT C 1 401 401 CHT CHT . 
P 2 CHT C 1 402 402 CHT CHT . 
Q 2 CHT C 1 403 403 CHT CHT . 
R 2 CHT C 1 404 404 CHT CHT . 
S 2 CHT D 1 402 402 CHT CHT . 
T 2 CHT D 1 403 403 CHT CHT . 
U 2 CHT D 1 404 404 CHT CHT . 
V 2 CHT E 1 414 414 CHT CHT . 
W 2 CHT F 1 400 400 CHT CHT . 
X 2 CHT F 1 401 401 CHT CHT . 
Y 2 CHT F 1 402 402 CHT CHT . 
Z 2 CHT F 1 403 403 CHT CHT . 
AA 3 DDQ F 1 404 404 DDQ DDQ . 
BA 4 TRS F 1 1319 1319 TRS TRS . 
CA 5 HOH A 1 2001 2001 HOH HOH . 
CA 5 HOH A 2 2002 2002 HOH HOH . 
CA 5 HOH A 3 2003 2003 HOH HOH . 
CA 5 HOH A 4 2004 2004 HOH HOH . 
CA 5 HOH A 5 2005 2005 HOH HOH . 
CA 5 HOH A 6 2006 2006 HOH HOH . 
CA 5 HOH A 7 2007 2007 HOH HOH . 
CA 5 HOH A 8 2008 2008 HOH HOH . 
CA 5 HOH A 9 2009 2009 HOH HOH . 
CA 5 HOH A 10 2010 2010 HOH HOH . 
CA 5 HOH A 11 2011 2011 HOH HOH . 
CA 5 HOH A 12 2012 2012 HOH HOH . 
CA 5 HOH A 13 2013 2013 HOH HOH . 
DA 5 HOH B 1 2001 2001 HOH HOH . 
DA 5 HOH B 2 2002 2002 HOH HOH . 
DA 5 HOH B 3 2003 2003 HOH HOH . 
DA 5 HOH B 4 2004 2004 HOH HOH . 
DA 5 HOH B 5 2005 2005 HOH HOH . 
DA 5 HOH B 6 2006 2006 HOH HOH . 
DA 5 HOH B 7 2007 2007 HOH HOH . 
DA 5 HOH B 8 2008 2008 HOH HOH . 
DA 5 HOH B 9 2009 2009 HOH HOH . 
DA 5 HOH B 10 2010 2010 HOH HOH . 
DA 5 HOH B 11 2011 2011 HOH HOH . 
DA 5 HOH B 12 2012 2012 HOH HOH . 
DA 5 HOH B 13 2013 2013 HOH HOH . 
DA 5 HOH B 14 2014 2014 HOH HOH . 
EA 5 HOH C 1 2001 2001 HOH HOH . 
EA 5 HOH C 2 2002 2002 HOH HOH . 
EA 5 HOH C 3 2003 2003 HOH HOH . 
EA 5 HOH C 4 2004 2004 HOH HOH . 
EA 5 HOH C 5 2005 2005 HOH HOH . 
EA 5 HOH C 6 2006 2006 HOH HOH . 
EA 5 HOH C 7 2007 2007 HOH HOH . 
EA 5 HOH C 8 2008 2008 HOH HOH . 
EA 5 HOH C 9 2009 2009 HOH HOH . 
EA 5 HOH C 10 2010 2010 HOH HOH . 
EA 5 HOH C 11 2011 2011 HOH HOH . 
EA 5 HOH C 12 2012 2012 HOH HOH . 
EA 5 HOH C 13 2013 2013 HOH HOH . 
EA 5 HOH C 14 2014 2014 HOH HOH . 
EA 5 HOH C 15 2015 2015 HOH HOH . 
EA 5 HOH C 16 2016 2016 HOH HOH . 
EA 5 HOH C 17 2017 2017 HOH HOH . 
EA 5 HOH C 18 2018 2018 HOH HOH . 
EA 5 HOH C 19 2019 2019 HOH HOH . 
EA 5 HOH C 20 2020 2020 HOH HOH . 
EA 5 HOH C 21 2021 2021 HOH HOH . 
EA 5 HOH C 22 2022 2022 HOH HOH . 
EA 5 HOH C 23 2023 2023 HOH HOH . 
EA 5 HOH C 24 2024 2024 HOH HOH . 
EA 5 HOH C 25 2025 2025 HOH HOH . 
FA 5 HOH D 1 2001 2001 HOH HOH . 
FA 5 HOH D 2 2002 2002 HOH HOH . 
FA 5 HOH D 3 2003 2003 HOH HOH . 
FA 5 HOH D 4 2004 2004 HOH HOH . 
FA 5 HOH D 5 2005 2005 HOH HOH . 
FA 5 HOH D 6 2006 2006 HOH HOH . 
FA 5 HOH D 7 2007 2007 HOH HOH . 
FA 5 HOH D 8 2008 2008 HOH HOH . 
FA 5 HOH D 9 2009 2009 HOH HOH . 
FA 5 HOH D 10 2010 2010 HOH HOH . 
FA 5 HOH D 11 2011 2011 HOH HOH . 
GA 5 HOH F 1 2001 2001 HOH HOH . 
GA 5 HOH F 2 2002 2002 HOH HOH . 
GA 5 HOH F 3 2003 2003 HOH HOH . 
GA 5 HOH F 4 2004 2004 HOH HOH . 
GA 5 HOH F 5 2005 2005 HOH HOH . 
GA 5 HOH F 6 2006 2006 HOH HOH . 
GA 5 HOH F 7 2007 2007 HOH HOH . 
GA 5 HOH F 8 2008 2008 HOH HOH . 
GA 5 HOH F 9 2009 2009 HOH HOH . 
GA 5 HOH F 10 2010 2010 HOH HOH . 
GA 5 HOH F 11 2011 2011 HOH HOH . 
GA 5 HOH F 12 2012 2012 HOH HOH . 
GA 5 HOH F 13 2013 2013 HOH HOH . 
GA 5 HOH F 14 2014 2014 HOH HOH . 
GA 5 HOH F 15 2015 2015 HOH HOH . 
GA 5 HOH F 16 2016 2016 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 DDQ . . . AA 3 55.009 8.868 60.789 1 56.58 ? N1 DDQ 404 F 1 
HETATM 2 O O1 DDQ . . . AA 3 54.254 8.957 61.742 1 54.38 ? O1 DDQ 404 F 1 
HETATM 3 C CM1 DDQ . . . AA 3 54.556 9.78 59.744 1 56.58 ? CM1 DDQ 404 F 1 
HETATM 4 C CM2 DDQ . . . AA 3 56.294 9.422 61.082 1 55.04 ? CM2 DDQ 404 F 1 
HETATM 5 C C1 DDQ . . . AA 3 55.002 7.511 60.171 1 58.98 ? C1 DDQ 404 F 1 
HETATM 6 C C2 DDQ . . . AA 3 55.967 7.272 58.957 1 61.59 ? C2 DDQ 404 F 1 
HETATM 7 C C3 DDQ . . . AA 3 55.521 6.022 58.118 1 61.62 ? C3 DDQ 404 F 1 
HETATM 8 C C4 DDQ . . . AA 3 54.389 6.465 57.183 1 61.57 ? C4 DDQ 404 F 1 
HETATM 9 C C5 DDQ . . . AA 3 54.788 6.595 55.72 1 60.35 ? C5 DDQ 404 F 1 
HETATM 10 C C6 DDQ . . . AA 3 53.45 6.926 54.999 1 59.79 ? C6 DDQ 404 F 1 
HETATM 11 C C7 DDQ . . . AA 3 53.772 7.082 53.514 1 59.16 ? C7 DDQ 404 F 1 
HETATM 12 C C8 DDQ . . . AA 3 52.63 7.771 52.736 1 59.63 ? C8 DDQ 404 F 1 
HETATM 13 C C9 DDQ . . . AA 3 53.285 9.068 52.305 1 60.13 ? C9 DDQ 404 F 1 
HETATM 14 C C10 DDQ . . . AA 3 52.258 10.193 52.22 1 59.51 ? C10 DDQ 404 F 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           14 
#