data_1GWB # _model_server_result.job_id Oyg80QNITF7ZTwFEGXYiGg _model_server_result.datetime_utc '2024-11-15 23:43:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1gwb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 1GWB # _exptl.entry_id 1GWB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 195.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PLATINUM (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1GWB _cell.length_a 202 _cell.length_b 202 _cell.length_c 128 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GWB _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 64 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PQS monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,L 1 1 B,H,I,J,K,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 H N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 5 A CYS 20 1_555 A SG CYS 18 A CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 210 A CYS 225 1_555 A SG CYS 249 A CYS 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 A SG CYS 212 A CYS 227 1_555 A SG CYS 265 A CYS 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf4 B SG CYS 5 B CYS 20 1_555 B SG CYS 18 B CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf5 B SG CYS 210 B CYS 225 1_555 B SG CYS 249 B CYS 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 B SG CYS 212 B CYS 227 1_555 B SG CYS 265 B CYS 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? covale ? covale1 A ND2 ASN 22 A ASN 37 1_555 F C1 NAG . A NAG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale2 A ND2 ASN 160 A ASN 175 1_555 G C1 NAG . A NAG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale3 B ND2 ASN 160 B ASN 175 1_555 J C1 NAG . B NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale4 B C LEU 276 B LEU 291 1_555 B N TYS 277 B TYS 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 B C TYS 277 B TYS 292 1_555 B N ASP 278 B ASP 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 B C ASP 278 B ASP 293 1_555 B N TYS 279 B TYS 294 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 B C TYS 279 B TYS 294 1_555 B N TYS 280 B TYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale8 B C TYS 280 B TYS 295 1_555 B N PRO 281 B PRO 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? metalc ? metalc1 H PT PT . B PT 301 1_555 M O HOH . B HOH 468 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.702 ? # _chem_comp.formula 'Pt 2' _chem_comp.formula_weight 195.078 _chem_comp.id PT _chem_comp.mon_nstd_flag . _chem_comp.name 'PLATINUM (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1GWB _atom_sites.fract_transf_matrix[1][1] 0.00495 _atom_sites.fract_transf_matrix[1][2] 0.002858 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005716 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007812 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PT A 1 301 402 PT PT . D 2 PT A 1 302 403 PT PT . E 3 ACY A 1 303 510 ACY ACY . F 4 NAG A 1 304 1137 NAG NAG . G 4 NAG A 1 305 1175 NAG NAG . H 2 PT B 1 301 400 PT PT . I 2 PT B 1 302 404 PT PT . J 4 NAG B 1 303 600 NAG NAG . K 5 SO4 B 1 304 504 SO4 SO4 . L 6 HOH A 1 401 2035 HOH HOH . L 6 HOH A 2 402 2005 HOH HOH . L 6 HOH A 3 403 2033 HOH HOH . L 6 HOH A 4 404 2028 HOH HOH . L 6 HOH A 5 405 2050 HOH HOH . L 6 HOH A 6 406 2017 HOH HOH . L 6 HOH A 7 407 2029 HOH HOH . L 6 HOH A 8 408 2037 HOH HOH . L 6 HOH A 9 409 2024 HOH HOH . L 6 HOH A 10 410 2015 HOH HOH . L 6 HOH A 11 411 2020 HOH HOH . L 6 HOH A 12 412 2021 HOH HOH . L 6 HOH A 13 413 2051 HOH HOH . L 6 HOH A 14 414 2052 HOH HOH . L 6 HOH A 15 415 2004 HOH HOH . L 6 HOH A 16 416 2036 HOH HOH . L 6 HOH A 17 417 2018 HOH HOH . L 6 HOH A 18 418 2056 HOH HOH . L 6 HOH A 19 419 2041 HOH HOH . L 6 HOH A 20 420 2049 HOH HOH . L 6 HOH A 21 421 2046 HOH HOH . L 6 HOH A 22 422 2019 HOH HOH . L 6 HOH A 23 423 2030 HOH HOH . L 6 HOH A 24 424 2031 HOH HOH . L 6 HOH A 25 425 2032 HOH HOH . L 6 HOH A 26 426 2022 HOH HOH . L 6 HOH A 27 427 2040 HOH HOH . L 6 HOH A 28 428 2025 HOH HOH . L 6 HOH A 29 429 2034 HOH HOH . L 6 HOH A 30 430 2048 HOH HOH . L 6 HOH A 31 431 2023 HOH HOH . L 6 HOH A 32 432 2039 HOH HOH . L 6 HOH A 33 433 2047 HOH HOH . L 6 HOH A 34 434 2027 HOH HOH . L 6 HOH A 35 435 2026 HOH HOH . L 6 HOH A 36 436 2053 HOH HOH . L 6 HOH A 37 437 2007 HOH HOH . L 6 HOH A 38 438 2043 HOH HOH . L 6 HOH A 39 439 2038 HOH HOH . L 6 HOH A 40 440 2009 HOH HOH . L 6 HOH A 41 441 2044 HOH HOH . L 6 HOH A 42 442 2042 HOH HOH . L 6 HOH A 43 443 2054 HOH HOH . L 6 HOH A 44 444 2010 HOH HOH . L 6 HOH A 45 445 2057 HOH HOH . L 6 HOH A 46 446 2012 HOH HOH . L 6 HOH A 47 447 2014 HOH HOH . L 6 HOH A 48 448 2011 HOH HOH . L 6 HOH A 49 449 2013 HOH HOH . L 6 HOH A 50 450 2045 HOH HOH . L 6 HOH A 51 451 2008 HOH HOH . M 6 HOH B 1 401 2038 HOH HOH . M 6 HOH B 2 402 2032 HOH HOH . M 6 HOH B 3 403 2057 HOH HOH . M 6 HOH B 4 404 2077 HOH HOH . M 6 HOH B 5 405 2051 HOH HOH . M 6 HOH B 6 406 2066 HOH HOH . M 6 HOH B 7 407 2044 HOH HOH . M 6 HOH B 8 408 2078 HOH HOH . M 6 HOH B 9 409 2074 HOH HOH . M 6 HOH B 10 410 2064 HOH HOH . M 6 HOH B 11 411 2045 HOH HOH . M 6 HOH B 12 412 2076 HOH HOH . M 6 HOH B 13 413 2024 HOH HOH . M 6 HOH B 14 414 2002 HOH HOH . M 6 HOH B 15 415 2065 HOH HOH . M 6 HOH B 16 416 2055 HOH HOH . M 6 HOH B 17 417 2083 HOH HOH . M 6 HOH B 18 418 2042 HOH HOH . M 6 HOH B 19 419 2060 HOH HOH . M 6 HOH B 20 420 2031 HOH HOH . M 6 HOH B 21 421 2061 HOH HOH . M 6 HOH B 22 422 2056 HOH HOH . M 6 HOH B 23 423 2070 HOH HOH . M 6 HOH B 24 424 2063 HOH HOH . M 6 HOH B 25 425 2059 HOH HOH . M 6 HOH B 26 426 2062 HOH HOH . M 6 HOH B 27 427 2085 HOH HOH . M 6 HOH B 28 428 2069 HOH HOH . M 6 HOH B 29 429 2003 HOH HOH . M 6 HOH B 30 430 2080 HOH HOH . M 6 HOH B 31 431 2022 HOH HOH . M 6 HOH B 32 432 2068 HOH HOH . M 6 HOH B 33 433 2050 HOH HOH . M 6 HOH B 34 434 2013 HOH HOH . M 6 HOH B 35 435 2073 HOH HOH . M 6 HOH B 36 436 2086 HOH HOH . M 6 HOH B 37 437 2081 HOH HOH . M 6 HOH B 38 438 2052 HOH HOH . M 6 HOH B 39 439 2072 HOH HOH . M 6 HOH B 40 440 2058 HOH HOH . M 6 HOH B 41 441 2084 HOH HOH . M 6 HOH B 42 442 2055 HOH HOH . M 6 HOH B 43 443 2021 HOH HOH . M 6 HOH B 44 444 2049 HOH HOH . M 6 HOH B 45 445 2071 HOH HOH . M 6 HOH B 46 446 2075 HOH HOH . M 6 HOH B 47 447 2007 HOH HOH . M 6 HOH B 48 448 2053 HOH HOH . M 6 HOH B 49 449 2029 HOH HOH . M 6 HOH B 50 450 2039 HOH HOH . M 6 HOH B 51 451 2040 HOH HOH . M 6 HOH B 52 452 2047 HOH HOH . M 6 HOH B 53 453 2054 HOH HOH . M 6 HOH B 54 454 2048 HOH HOH . M 6 HOH B 55 455 2067 HOH HOH . M 6 HOH B 56 456 2002 HOH HOH . M 6 HOH B 57 457 2079 HOH HOH . M 6 HOH B 58 458 2046 HOH HOH . M 6 HOH B 59 459 2033 HOH HOH . M 6 HOH B 60 460 2028 HOH HOH . M 6 HOH B 61 461 2003 HOH HOH . M 6 HOH B 62 462 2025 HOH HOH . M 6 HOH B 63 463 2001 HOH HOH . M 6 HOH B 64 464 2006 HOH HOH . M 6 HOH B 65 465 2018 HOH HOH . M 6 HOH B 66 466 2001 HOH HOH . M 6 HOH B 67 467 2082 HOH HOH . M 6 HOH B 68 468 2014 HOH HOH . M 6 HOH B 69 469 2037 HOH HOH . M 6 HOH B 70 470 2023 HOH HOH . M 6 HOH B 71 471 2011 HOH HOH . M 6 HOH B 72 472 2004 HOH HOH . M 6 HOH B 73 473 2005 HOH HOH . M 6 HOH B 74 474 2010 HOH HOH . M 6 HOH B 75 475 2016 HOH HOH . M 6 HOH B 76 476 2027 HOH HOH . M 6 HOH B 77 477 2026 HOH HOH . M 6 HOH B 78 478 2030 HOH HOH . M 6 HOH B 79 479 2035 HOH HOH . M 6 HOH B 80 480 2034 HOH HOH . M 6 HOH B 81 481 2016 HOH HOH . M 6 HOH B 82 482 2036 HOH HOH . M 6 HOH B 83 483 2009 HOH HOH . M 6 HOH B 84 484 2019 HOH HOH . M 6 HOH B 85 485 2008 HOH HOH . M 6 HOH B 86 486 2017 HOH HOH . M 6 HOH B 87 487 2020 HOH HOH . M 6 HOH B 88 488 2012 HOH HOH . M 6 HOH B 89 489 2041 HOH HOH . M 6 HOH B 90 490 2015 HOH HOH . M 6 HOH B 91 491 2006 HOH HOH . M 6 HOH B 92 492 2043 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol PT _atom_site.label_atom_id PT _atom_site.label_comp_id PT _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x -7.765 _atom_site.Cartn_y 84.025 _atom_site.Cartn_z 55.562 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 98.6 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id PT _atom_site.auth_comp_id PT _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #