data_1GWB # _model_server_result.job_id J_BujYTu8Rlth5ylEcizYQ _model_server_result.datetime_utc '2024-11-15 23:46:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1gwb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":305}' # _entry.id 1GWB # _exptl.entry_id 1GWB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1GWB _cell.length_a 202 _cell.length_b 202 _cell.length_c 128 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GWB _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 64 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PQS monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,L 1 1 B,H,I,J,K,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 5 A CYS 20 1_555 A SG CYS 18 A CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 210 A CYS 225 1_555 A SG CYS 249 A CYS 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 A SG CYS 212 A CYS 227 1_555 A SG CYS 265 A CYS 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf4 B SG CYS 5 B CYS 20 1_555 B SG CYS 18 B CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf5 B SG CYS 210 B CYS 225 1_555 B SG CYS 249 B CYS 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 B SG CYS 212 B CYS 227 1_555 B SG CYS 265 B CYS 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? covale ? covale1 A ND2 ASN 22 A ASN 37 1_555 F C1 NAG . A NAG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale2 A ND2 ASN 160 A ASN 175 1_555 G C1 NAG . A NAG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale3 B ND2 ASN 160 B ASN 175 1_555 J C1 NAG . B NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale4 B C LEU 276 B LEU 291 1_555 B N TYS 277 B TYS 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 B C TYS 277 B TYS 292 1_555 B N ASP 278 B ASP 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 B C ASP 278 B ASP 293 1_555 B N TYS 279 B TYS 294 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 B C TYS 279 B TYS 294 1_555 B N TYS 280 B TYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale8 B C TYS 280 B TYS 295 1_555 B N PRO 281 B PRO 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? metalc ? metalc1 H PT PT . B PT 301 1_555 M O HOH . B HOH 468 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.702 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 244 n n C1 O1 NAG sing 245 n n C1 O5 NAG sing 246 n n C1 H1 NAG sing 247 n n C2 C3 NAG sing 248 n n C2 N2 NAG sing 249 n n C2 H2 NAG sing 250 n n C3 C4 NAG sing 251 n n C3 O3 NAG sing 252 n n C3 H3 NAG sing 253 n n C4 C5 NAG sing 254 n n C4 O4 NAG sing 255 n n C4 H4 NAG sing 256 n n C5 C6 NAG sing 257 n n C5 O5 NAG sing 258 n n C5 H5 NAG sing 259 n n C6 O6 NAG sing 260 n n C6 H61 NAG sing 261 n n C6 H62 NAG sing 262 n n C7 C8 NAG sing 263 n n C7 N2 NAG sing 264 n n C7 O7 NAG doub 265 n n C8 H81 NAG sing 266 n n C8 H82 NAG sing 267 n n C8 H83 NAG sing 268 n n N2 HN2 NAG sing 269 n n O1 HO1 NAG sing 270 n n O3 HO3 NAG sing 271 n n O4 HO4 NAG sing 272 n n O6 HO6 NAG sing 273 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1GWB _atom_sites.fract_transf_matrix[1][1] 0.00495 _atom_sites.fract_transf_matrix[1][2] 0.002858 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005716 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007812 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PT A 1 301 402 PT PT . D 2 PT A 1 302 403 PT PT . E 3 ACY A 1 303 510 ACY ACY . F 4 NAG A 1 304 1137 NAG NAG . G 4 NAG A 1 305 1175 NAG NAG . H 2 PT B 1 301 400 PT PT . I 2 PT B 1 302 404 PT PT . J 4 NAG B 1 303 600 NAG NAG . K 5 SO4 B 1 304 504 SO4 SO4 . L 6 HOH A 1 401 2035 HOH HOH . L 6 HOH A 2 402 2005 HOH HOH . L 6 HOH A 3 403 2033 HOH HOH . L 6 HOH A 4 404 2028 HOH HOH . L 6 HOH A 5 405 2050 HOH HOH . L 6 HOH A 6 406 2017 HOH HOH . L 6 HOH A 7 407 2029 HOH HOH . L 6 HOH A 8 408 2037 HOH HOH . L 6 HOH A 9 409 2024 HOH HOH . L 6 HOH A 10 410 2015 HOH HOH . L 6 HOH A 11 411 2020 HOH HOH . L 6 HOH A 12 412 2021 HOH HOH . L 6 HOH A 13 413 2051 HOH HOH . L 6 HOH A 14 414 2052 HOH HOH . L 6 HOH A 15 415 2004 HOH HOH . L 6 HOH A 16 416 2036 HOH HOH . L 6 HOH A 17 417 2018 HOH HOH . L 6 HOH A 18 418 2056 HOH HOH . L 6 HOH A 19 419 2041 HOH HOH . L 6 HOH A 20 420 2049 HOH HOH . L 6 HOH A 21 421 2046 HOH HOH . L 6 HOH A 22 422 2019 HOH HOH . L 6 HOH A 23 423 2030 HOH HOH . L 6 HOH A 24 424 2031 HOH HOH . L 6 HOH A 25 425 2032 HOH HOH . L 6 HOH A 26 426 2022 HOH HOH . L 6 HOH A 27 427 2040 HOH HOH . L 6 HOH A 28 428 2025 HOH HOH . L 6 HOH A 29 429 2034 HOH HOH . L 6 HOH A 30 430 2048 HOH HOH . L 6 HOH A 31 431 2023 HOH HOH . L 6 HOH A 32 432 2039 HOH HOH . L 6 HOH A 33 433 2047 HOH HOH . L 6 HOH A 34 434 2027 HOH HOH . L 6 HOH A 35 435 2026 HOH HOH . L 6 HOH A 36 436 2053 HOH HOH . L 6 HOH A 37 437 2007 HOH HOH . L 6 HOH A 38 438 2043 HOH HOH . L 6 HOH A 39 439 2038 HOH HOH . L 6 HOH A 40 440 2009 HOH HOH . L 6 HOH A 41 441 2044 HOH HOH . L 6 HOH A 42 442 2042 HOH HOH . L 6 HOH A 43 443 2054 HOH HOH . L 6 HOH A 44 444 2010 HOH HOH . L 6 HOH A 45 445 2057 HOH HOH . L 6 HOH A 46 446 2012 HOH HOH . L 6 HOH A 47 447 2014 HOH HOH . L 6 HOH A 48 448 2011 HOH HOH . L 6 HOH A 49 449 2013 HOH HOH . L 6 HOH A 50 450 2045 HOH HOH . L 6 HOH A 51 451 2008 HOH HOH . M 6 HOH B 1 401 2038 HOH HOH . M 6 HOH B 2 402 2032 HOH HOH . M 6 HOH B 3 403 2057 HOH HOH . M 6 HOH B 4 404 2077 HOH HOH . M 6 HOH B 5 405 2051 HOH HOH . M 6 HOH B 6 406 2066 HOH HOH . M 6 HOH B 7 407 2044 HOH HOH . M 6 HOH B 8 408 2078 HOH HOH . M 6 HOH B 9 409 2074 HOH HOH . M 6 HOH B 10 410 2064 HOH HOH . M 6 HOH B 11 411 2045 HOH HOH . M 6 HOH B 12 412 2076 HOH HOH . M 6 HOH B 13 413 2024 HOH HOH . M 6 HOH B 14 414 2002 HOH HOH . M 6 HOH B 15 415 2065 HOH HOH . M 6 HOH B 16 416 2055 HOH HOH . M 6 HOH B 17 417 2083 HOH HOH . M 6 HOH B 18 418 2042 HOH HOH . M 6 HOH B 19 419 2060 HOH HOH . M 6 HOH B 20 420 2031 HOH HOH . M 6 HOH B 21 421 2061 HOH HOH . M 6 HOH B 22 422 2056 HOH HOH . M 6 HOH B 23 423 2070 HOH HOH . M 6 HOH B 24 424 2063 HOH HOH . M 6 HOH B 25 425 2059 HOH HOH . M 6 HOH B 26 426 2062 HOH HOH . M 6 HOH B 27 427 2085 HOH HOH . M 6 HOH B 28 428 2069 HOH HOH . M 6 HOH B 29 429 2003 HOH HOH . M 6 HOH B 30 430 2080 HOH HOH . M 6 HOH B 31 431 2022 HOH HOH . M 6 HOH B 32 432 2068 HOH HOH . M 6 HOH B 33 433 2050 HOH HOH . M 6 HOH B 34 434 2013 HOH HOH . M 6 HOH B 35 435 2073 HOH HOH . M 6 HOH B 36 436 2086 HOH HOH . M 6 HOH B 37 437 2081 HOH HOH . M 6 HOH B 38 438 2052 HOH HOH . M 6 HOH B 39 439 2072 HOH HOH . M 6 HOH B 40 440 2058 HOH HOH . M 6 HOH B 41 441 2084 HOH HOH . M 6 HOH B 42 442 2055 HOH HOH . M 6 HOH B 43 443 2021 HOH HOH . M 6 HOH B 44 444 2049 HOH HOH . M 6 HOH B 45 445 2071 HOH HOH . M 6 HOH B 46 446 2075 HOH HOH . M 6 HOH B 47 447 2007 HOH HOH . M 6 HOH B 48 448 2053 HOH HOH . M 6 HOH B 49 449 2029 HOH HOH . M 6 HOH B 50 450 2039 HOH HOH . M 6 HOH B 51 451 2040 HOH HOH . M 6 HOH B 52 452 2047 HOH HOH . M 6 HOH B 53 453 2054 HOH HOH . M 6 HOH B 54 454 2048 HOH HOH . M 6 HOH B 55 455 2067 HOH HOH . M 6 HOH B 56 456 2002 HOH HOH . M 6 HOH B 57 457 2079 HOH HOH . M 6 HOH B 58 458 2046 HOH HOH . M 6 HOH B 59 459 2033 HOH HOH . M 6 HOH B 60 460 2028 HOH HOH . M 6 HOH B 61 461 2003 HOH HOH . M 6 HOH B 62 462 2025 HOH HOH . M 6 HOH B 63 463 2001 HOH HOH . M 6 HOH B 64 464 2006 HOH HOH . M 6 HOH B 65 465 2018 HOH HOH . M 6 HOH B 66 466 2001 HOH HOH . M 6 HOH B 67 467 2082 HOH HOH . M 6 HOH B 68 468 2014 HOH HOH . M 6 HOH B 69 469 2037 HOH HOH . M 6 HOH B 70 470 2023 HOH HOH . M 6 HOH B 71 471 2011 HOH HOH . M 6 HOH B 72 472 2004 HOH HOH . M 6 HOH B 73 473 2005 HOH HOH . M 6 HOH B 74 474 2010 HOH HOH . M 6 HOH B 75 475 2016 HOH HOH . M 6 HOH B 76 476 2027 HOH HOH . M 6 HOH B 77 477 2026 HOH HOH . M 6 HOH B 78 478 2030 HOH HOH . M 6 HOH B 79 479 2035 HOH HOH . M 6 HOH B 80 480 2034 HOH HOH . M 6 HOH B 81 481 2016 HOH HOH . M 6 HOH B 82 482 2036 HOH HOH . M 6 HOH B 83 483 2009 HOH HOH . M 6 HOH B 84 484 2019 HOH HOH . M 6 HOH B 85 485 2008 HOH HOH . M 6 HOH B 86 486 2017 HOH HOH . M 6 HOH B 87 487 2020 HOH HOH . M 6 HOH B 88 488 2012 HOH HOH . M 6 HOH B 89 489 2041 HOH HOH . M 6 HOH B 90 490 2015 HOH HOH . M 6 HOH B 91 491 2006 HOH HOH . M 6 HOH B 92 492 2043 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . G 4 -10.123 77.213 32.421 1 83.36 ? C1 NAG 305 A 1 HETATM 2 C C2 NAG . . . G 4 -10.345 76.88 30.938 1 85.56 ? C2 NAG 305 A 1 HETATM 3 C C3 NAG . . . G 4 -10.404 75.354 30.732 1 86.88 ? C3 NAG 305 A 1 HETATM 4 C C4 NAG . . . G 4 -9.203 74.665 31.388 1 87.56 ? C4 NAG 305 A 1 HETATM 5 C C5 NAG . . . G 4 -9.094 75.096 32.854 1 87.73 ? C5 NAG 305 A 1 HETATM 6 C C6 NAG . . . G 4 -7.893 74.493 33.564 1 88.74 ? C6 NAG 305 A 1 HETATM 7 C C7 NAG . . . G 4 -12.437 76.902 29.687 1 87.61 ? C7 NAG 305 A 1 HETATM 8 C C8 NAG . . . G 4 -13.446 75.942 30.31 1 87.09 ? C8 NAG 305 A 1 HETATM 9 N N2 NAG . . . G 4 -11.581 77.516 30.502 1 86.93 ? N2 NAG 305 A 1 HETATM 10 O O3 NAG . . . G 4 -10.407 75.059 29.344 1 88.13 ? O3 NAG 305 A 1 HETATM 11 O O4 NAG . . . G 4 -9.354 73.254 31.306 1 87.78 ? O4 NAG 305 A 1 HETATM 12 O O5 NAG . . . G 4 -8.965 76.534 32.931 1 85.47 ? O5 NAG 305 A 1 HETATM 13 O O6 NAG . . . G 4 -7.907 73.073 33.491 1 89.87 ? O6 NAG 305 A 1 HETATM 14 O O7 NAG . . . G 4 -12.45 77.097 28.47 1 88.14 ? O7 NAG 305 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 41 _model_server_stats.query_time_ms 968 _model_server_stats.encode_time_ms 22 _model_server_stats.element_count 14 #