data_1GX9 # _model_server_result.job_id 0EPa1jRuZFlM4EuupRRmfg _model_server_result.datetime_utc '2024-10-24 04:25:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1gx9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1163}' # _entry.id 1GX9 # _exptl.entry_id 1GX9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 300.435 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'RETINOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1GX9 _cell.length_a 53.66 _cell.length_b 53.66 _cell.length_c 111.225 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GX9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 111.225 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 66 A CYS 66 1_555 A SG CYS 160 A CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf2 A SG CYS 106 A CYS 106 1_555 A SG CYS 119 A CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? # _chem_comp.formula 'C20 H28 O2' _chem_comp.formula_weight 300.435 _chem_comp.id REA _chem_comp.mon_nstd_flag . _chem_comp.name 'RETINOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 REA sing 277 n n C1 C6 REA sing 278 n n C1 C16 REA sing 279 n n C1 C17 REA sing 280 n n C2 C3 REA sing 281 n n C2 H21 REA sing 282 n n C2 H22 REA sing 283 n n C3 C4 REA sing 284 n n C3 H31 REA sing 285 n n C3 H32 REA sing 286 n n C4 C5 REA sing 287 n n C4 H41 REA sing 288 n n C4 H42 REA sing 289 n n C5 C6 REA doub 290 n n C5 C18 REA sing 291 n n C6 C7 REA sing 292 n n C7 C8 REA doub 293 e n C7 H7 REA sing 294 n n C8 C9 REA sing 295 n n C8 H8 REA sing 296 n n C9 C10 REA doub 297 e n C9 C19 REA sing 298 n n C10 C11 REA sing 299 n n C10 H10 REA sing 300 n n C11 C12 REA doub 301 e n C11 H11 REA sing 302 n n C12 C13 REA sing 303 n n C12 H12 REA sing 304 n n C13 C14 REA doub 305 e n C13 C20 REA sing 306 n n C14 C15 REA sing 307 n n C14 H14 REA sing 308 n n C15 O1 REA doub 309 n n C15 O2 REA sing 310 n n C16 H161 REA sing 311 n n C16 H162 REA sing 312 n n C16 H163 REA sing 313 n n C17 H171 REA sing 314 n n C17 H172 REA sing 315 n n C17 H173 REA sing 316 n n C18 H181 REA sing 317 n n C18 H182 REA sing 318 n n C18 H183 REA sing 319 n n C19 H191 REA sing 320 n n C19 H192 REA sing 321 n n C19 H193 REA sing 322 n n C20 H201 REA sing 323 n n C20 H202 REA sing 324 n n C20 H203 REA sing 325 n n O2 HO2 REA sing 326 n n # _atom_sites.entry_id 1GX9 _atom_sites.fract_transf_matrix[1][1] 0.018636 _atom_sites.fract_transf_matrix[1][2] 0.010759 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021519 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008991 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 REA A 1 1163 1163 REA REA . C 3 HOH A 1 2001 2001 HOH HOH . C 3 HOH A 2 2002 2002 HOH HOH . C 3 HOH A 3 2003 2003 HOH HOH . C 3 HOH A 4 2004 2004 HOH HOH . C 3 HOH A 5 2005 2005 HOH HOH . C 3 HOH A 6 2006 2006 HOH HOH . C 3 HOH A 7 2007 2007 HOH HOH . C 3 HOH A 8 2008 2008 HOH HOH . C 3 HOH A 9 2009 2009 HOH HOH . C 3 HOH A 10 2010 2010 HOH HOH . C 3 HOH A 11 2011 2011 HOH HOH . C 3 HOH A 12 2012 2012 HOH HOH . C 3 HOH A 13 2013 2013 HOH HOH . C 3 HOH A 14 2014 2014 HOH HOH . C 3 HOH A 15 2015 2015 HOH HOH . C 3 HOH A 16 2016 2016 HOH HOH . C 3 HOH A 17 2017 2017 HOH HOH . C 3 HOH A 18 2018 2018 HOH HOH . C 3 HOH A 19 2019 2019 HOH HOH . C 3 HOH A 20 2020 2020 HOH HOH . C 3 HOH A 21 2021 2021 HOH HOH . C 3 HOH A 22 2022 2022 HOH HOH . C 3 HOH A 23 2023 2023 HOH HOH . C 3 HOH A 24 2024 2024 HOH HOH . C 3 HOH A 25 2025 2025 HOH HOH . C 3 HOH A 26 2026 2026 HOH HOH . C 3 HOH A 27 2027 2027 HOH HOH . C 3 HOH A 28 2028 2028 HOH HOH . C 3 HOH A 29 2029 2029 HOH HOH . C 3 HOH A 30 2030 2030 HOH HOH . C 3 HOH A 31 2031 2031 HOH HOH . C 3 HOH A 32 2032 2032 HOH HOH . C 3 HOH A 33 2033 2033 HOH HOH . C 3 HOH A 34 2034 2034 HOH HOH . C 3 HOH A 35 2035 2035 HOH HOH . C 3 HOH A 36 2036 2036 HOH HOH . C 3 HOH A 37 2037 2037 HOH HOH . C 3 HOH A 38 2038 2038 HOH HOH . C 3 HOH A 39 2039 2039 HOH HOH . C 3 HOH A 40 2040 2040 HOH HOH . C 3 HOH A 41 2041 2041 HOH HOH . C 3 HOH A 42 2042 2042 HOH HOH . C 3 HOH A 43 2043 2043 HOH HOH . C 3 HOH A 44 2044 2044 HOH HOH . C 3 HOH A 45 2045 2045 HOH HOH . C 3 HOH A 46 2046 2046 HOH HOH . C 3 HOH A 47 2047 2047 HOH HOH . C 3 HOH A 48 2048 2048 HOH HOH . C 3 HOH A 49 2049 2049 HOH HOH . C 3 HOH A 50 2050 2050 HOH HOH . C 3 HOH A 51 2051 2051 HOH HOH . C 3 HOH A 52 2052 2052 HOH HOH . C 3 HOH A 53 2053 2053 HOH HOH . C 3 HOH A 54 2054 2054 HOH HOH . C 3 HOH A 55 2055 2055 HOH HOH . C 3 HOH A 56 2056 2056 HOH HOH . C 3 HOH A 57 2057 2057 HOH HOH . C 3 HOH A 58 2058 2058 HOH HOH . C 3 HOH A 59 2059 2059 HOH HOH . C 3 HOH A 60 2060 2060 HOH HOH . C 3 HOH A 61 2061 2061 HOH HOH . C 3 HOH A 62 2062 2062 HOH HOH . C 3 HOH A 63 2063 2063 HOH HOH . C 3 HOH A 64 2064 2064 HOH HOH . C 3 HOH A 65 2065 2065 HOH HOH . C 3 HOH A 66 2066 2066 HOH HOH . C 3 HOH A 67 2067 2067 HOH HOH . C 3 HOH A 68 2068 2068 HOH HOH . C 3 HOH A 69 2069 2069 HOH HOH . C 3 HOH A 70 2070 2070 HOH HOH . C 3 HOH A 71 2071 2071 HOH HOH . C 3 HOH A 72 2072 2072 HOH HOH . C 3 HOH A 73 2073 2073 HOH HOH . C 3 HOH A 74 2074 2074 HOH HOH . C 3 HOH A 75 2075 2075 HOH HOH . C 3 HOH A 76 2076 2076 HOH HOH . C 3 HOH A 77 2077 2077 HOH HOH . C 3 HOH A 78 2078 2078 HOH HOH . C 3 HOH A 79 2079 2079 HOH HOH . C 3 HOH A 80 2080 2080 HOH HOH . C 3 HOH A 81 2081 2081 HOH HOH . C 3 HOH A 82 2082 2082 HOH HOH . C 3 HOH A 83 2083 2083 HOH HOH . C 3 HOH A 84 2084 2084 HOH HOH . C 3 HOH A 85 2085 2085 HOH HOH . C 3 HOH A 86 2086 2086 HOH HOH . C 3 HOH A 87 2087 2087 HOH HOH . C 3 HOH A 88 2088 2088 HOH HOH . C 3 HOH A 89 2089 2089 HOH HOH . C 3 HOH A 90 2090 2090 HOH HOH . C 3 HOH A 91 2091 2091 HOH HOH . C 3 HOH A 92 2092 2092 HOH HOH . C 3 HOH A 93 2093 2093 HOH HOH . C 3 HOH A 94 2094 2094 HOH HOH . C 3 HOH A 95 2095 2095 HOH HOH . C 3 HOH A 96 2096 2096 HOH HOH . C 3 HOH A 97 2097 2097 HOH HOH . C 3 HOH A 98 2098 2098 HOH HOH . C 3 HOH A 99 2099 2099 HOH HOH . C 3 HOH A 100 2100 2100 HOH HOH . C 3 HOH A 101 2101 2101 HOH HOH . C 3 HOH A 102 2102 2102 HOH HOH . C 3 HOH A 103 2103 2103 HOH HOH . C 3 HOH A 104 2104 2104 HOH HOH . C 3 HOH A 105 2105 2105 HOH HOH . C 3 HOH A 106 2106 2106 HOH HOH . C 3 HOH A 107 2107 2107 HOH HOH . C 3 HOH A 108 2108 2108 HOH HOH . C 3 HOH A 109 2109 2109 HOH HOH . C 3 HOH A 110 2110 2110 HOH HOH . C 3 HOH A 111 2111 2111 HOH HOH . C 3 HOH A 112 2112 2112 HOH HOH . C 3 HOH A 113 2113 2113 HOH HOH . C 3 HOH A 114 2114 2114 HOH HOH . C 3 HOH A 115 2115 2115 HOH HOH . C 3 HOH A 116 2116 2116 HOH HOH . C 3 HOH A 117 2117 2117 HOH HOH . C 3 HOH A 118 2118 2118 HOH HOH . C 3 HOH A 119 2119 2119 HOH HOH . C 3 HOH A 120 2120 2120 HOH HOH . C 3 HOH A 121 2121 2121 HOH HOH . C 3 HOH A 122 2122 2122 HOH HOH . C 3 HOH A 123 2123 2123 HOH HOH . C 3 HOH A 124 2124 2124 HOH HOH . C 3 HOH A 125 2125 2125 HOH HOH . C 3 HOH A 126 2126 2126 HOH HOH . C 3 HOH A 127 2127 2127 HOH HOH . C 3 HOH A 128 2128 2128 HOH HOH . C 3 HOH A 129 2129 2129 HOH HOH . C 3 HOH A 130 2130 2130 HOH HOH . C 3 HOH A 131 2131 2131 HOH HOH . C 3 HOH A 132 2132 2132 HOH HOH . C 3 HOH A 133 2133 2133 HOH HOH . C 3 HOH A 134 2134 2134 HOH HOH . C 3 HOH A 135 2135 2135 HOH HOH . C 3 HOH A 136 2136 2136 HOH HOH . C 3 HOH A 137 2137 2137 HOH HOH . C 3 HOH A 138 2138 2138 HOH HOH . C 3 HOH A 139 2139 2139 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 REA . . . B 2 14.056 48.761 57.156 1 43.68 ? C1 REA 1163 A 1 HETATM 2 C C2 REA . . . B 2 12.622 48.742 57.712 1 52.88 ? C2 REA 1163 A 1 HETATM 3 C C3 REA . . . B 2 12.66 48.823 59.247 1 43.89 ? C3 REA 1163 A 1 HETATM 4 C C4 REA . . . B 2 13.364 47.548 59.751 1 25.97 ? C4 REA 1163 A 1 HETATM 5 C C5 REA . . . B 2 14.682 47.296 59.064 1 35.77 ? C5 REA 1163 A 1 HETATM 6 C C6 REA . . . B 2 15.014 47.842 57.883 1 40.64 ? C6 REA 1163 A 1 HETATM 7 C C7 REA . . . B 2 16.209 47.484 57.101 1 49.38 ? C7 REA 1163 A 1 HETATM 8 C C8 REA . . . B 2 17.472 47.876 57.186 1 57.35 ? C8 REA 1163 A 1 HETATM 9 C C9 REA . . . B 2 18.519 47.436 56.241 1 60.81 ? C9 REA 1163 A 1 HETATM 10 C C10 REA . . . B 2 19.603 48.198 56.12 1 73.46 ? C10 REA 1163 A 1 HETATM 11 C C11 REA . . . B 2 20.777 47.989 55.26 1 81.8 ? C11 REA 1163 A 1 HETATM 12 C C12 REA . . . B 2 22.011 48.004 55.763 1 96.16 ? C12 REA 1163 A 1 HETATM 13 C C13 REA . . . B 2 23.261 47.785 55.013 1 106.26 ? C13 REA 1163 A 1 HETATM 14 C C14 REA . . . B 2 24.371 47.33 55.609 1 107.35 ? C14 REA 1163 A 1 HETATM 15 C C15 REA . . . B 2 24.811 47.339 57.008 1 99.1 ? C15 REA 1163 A 1 HETATM 16 C C16 REA . . . B 2 14 48.347 55.668 1 45.37 ? C16 REA 1163 A 1 HETATM 17 C C17 REA . . . B 2 14.613 50.192 57.227 1 42.85 ? C17 REA 1163 A 1 HETATM 18 C C18 REA . . . B 2 15.527 46.244 59.721 1 36.23 ? C18 REA 1163 A 1 HETATM 19 C C19 REA . . . B 2 18.334 46.173 55.447 1 41.51 ? C19 REA 1163 A 1 HETATM 20 C C20 REA . . . B 2 23.184 47.58 53.518 1 88.9 ? C20 REA 1163 A 1 HETATM 21 O O1 REA . . . B 2 24.014 47.583 57.954 1 81.04 ? O1 REA 1163 A 1 HETATM 22 O O2 REA . . . B 2 26.028 47.088 57.24 1 97.63 ? O2 REA 1163 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #