data_1GXD # _model_server_result.job_id Gj_qjvadA5kSUCtnu9yGiw _model_server_result.datetime_utc '2024-10-18 16:23:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1gxd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1633}' # _entry.id 1GXD # _exptl.entry_id 1GXD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1GXD _cell.length_a 75.696 _cell.length_b 374.575 _cell.length_c 191 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GXD _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS dimeric 2 author_and_software_defined_assembly 1 PQS dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,H 1 1 B,D,I,J,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 J N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 31 A CYS 31 1_555 A SG CYS 36 A CYS 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 204 A CYS 204 1_555 A SG CYS 230 A CYS 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf3 A SG CYS 218 A CYS 218 1_555 A SG CYS 245 A CYS 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 A SG CYS 262 A CYS 262 1_555 A SG CYS 288 A CYS 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf5 A SG CYS 276 A CYS 276 1_555 A SG CYS 303 A CYS 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf6 A SG CYS 320 A CYS 320 1_555 A SG CYS 346 A CYS 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf7 A SG CYS 334 A CYS 334 1_555 A SG CYS 361 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf8 A SG CYS 440 A CYS 440 1_555 A SG CYS 631 A CYS 631 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf9 B SG CYS 31 B CYS 31 1_555 B SG CYS 36 B CYS 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf10 B SG CYS 204 B CYS 204 1_555 B SG CYS 230 B CYS 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf11 B SG CYS 218 B CYS 218 1_555 B SG CYS 245 B CYS 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf12 B SG CYS 262 B CYS 262 1_555 B SG CYS 288 B CYS 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf13 B SG CYS 276 B CYS 276 1_555 B SG CYS 303 B CYS 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf14 B SG CYS 320 B CYS 320 1_555 B SG CYS 346 B CYS 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf15 B SG CYS 334 B CYS 334 1_555 B SG CYS 361 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf16 B SG CYS 440 B CYS 440 1_555 B SG CYS 631 B CYS 631 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf17 C SG CYS 1 C CYS 1 1_555 C SG CYS 72 C CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf18 C SG CYS 3 C CYS 3 1_555 C SG CYS 101 C CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf19 C SG CYS 13 C CYS 13 1_555 C SG CYS 126 C CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf20 C SG CYS 128 C CYS 128 1_555 C SG CYS 175 C CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf21 C SG CYS 133 C CYS 133 1_555 C SG CYS 138 C CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf22 C SG CYS 146 C CYS 146 1_555 C SG CYS 167 C CYS 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf23 D SG CYS 1 D CYS 1 1_555 D SG CYS 72 D CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf24 D SG CYS 3 D CYS 3 1_555 D SG CYS 101 D CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf25 D SG CYS 13 D CYS 13 1_555 D SG CYS 126 D CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf26 D SG CYS 128 D CYS 128 1_555 D SG CYS 167 D CYS 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? disulf ? disulf27 D SG CYS 128 D CYS 128 1_555 D SG CYS 175 D CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf28 D SG CYS 133 D CYS 133 1_555 D SG CYS 138 D CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf29 D SG CYS 146 D CYS 146 1_555 D SG CYS 167 D CYS 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc1 A SG CYS 73 A CYS 73 1_555 G ZN ZN . A ZN 1634 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.932 ? metalc ? metalc2 A NE2 HIS 149 A HIS 149 1_555 F ZN ZN . A ZN 1633 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.751 ? metalc ? metalc3 A OD2 ASP 151 A ASP 151 1_555 F ZN ZN . A ZN 1633 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.624 ? metalc ? metalc4 A O ASP 156 A ASP 156 1_555 H CA CA . A CA 1635 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.812 ? metalc ? metalc5 A OD1 ASP 156 A ASP 156 1_555 H CA CA . A CA 1635 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.001 ? metalc ? metalc6 A O GLY 157 A GLY 157 1_555 H CA CA . A CA 1635 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? metalc ? metalc7 A O ASP 159 A ASP 159 1_555 H CA CA . A CA 1635 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc8 A O LEU 161 A LEU 161 1_555 H CA CA . A CA 1635 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc9 A NE2 HIS 164 A HIS 164 1_555 F ZN ZN . A ZN 1633 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? metalc ? metalc10 A ND1 HIS 177 A HIS 177 1_555 F ZN ZN . A ZN 1633 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.805 ? metalc ? metalc11 A OD2 ASP 179 A ASP 179 1_555 H CA CA . A CA 1635 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc12 A OE2 GLU 182 A GLU 182 1_555 H CA CA . A CA 1635 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc13 A NE2 HIS 374 A HIS 374 1_555 G ZN ZN . A ZN 1634 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.756 ? metalc ? metalc14 A NE2 HIS 378 A HIS 378 1_555 G ZN ZN . A ZN 1634 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.776 ? metalc ? metalc15 A NE2 HIS 384 A HIS 384 1_555 G ZN ZN . A ZN 1634 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc16 B SG CYS 73 B CYS 73 1_555 K ZN ZN . B ZN 1634 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.842 ? metalc ? metalc17 B NE2 HIS 149 B HIS 149 1_555 J ZN ZN . B ZN 1633 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.613 ? metalc ? metalc18 B OD1 ASP 151 B ASP 151 1_555 J ZN ZN . B ZN 1633 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.697 ? metalc ? metalc19 B OD2 ASP 151 B ASP 151 1_555 J ZN ZN . B ZN 1633 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.492 ? metalc ? metalc20 B OD1 ASP 156 B ASP 156 1_555 L CA CA . B CA 1635 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc21 B O GLY 157 B GLY 157 1_555 L CA CA . B CA 1635 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc22 B O ASP 159 B ASP 159 1_555 L CA CA . B CA 1635 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc23 B O LEU 161 B LEU 161 1_555 L CA CA . B CA 1635 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? metalc ? metalc24 B NE2 HIS 164 B HIS 164 1_555 J ZN ZN . B ZN 1633 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.713 ? metalc ? metalc25 B ND1 HIS 177 B HIS 177 1_555 J ZN ZN . B ZN 1633 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.859 ? metalc ? metalc26 B OD2 ASP 179 B ASP 179 1_555 L CA CA . B CA 1635 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc27 B OE2 GLU 182 B GLU 182 1_555 L CA CA . B CA 1635 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.705 ? metalc ? metalc28 B NE2 HIS 374 B HIS 374 1_555 K ZN ZN . B ZN 1634 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.821 ? metalc ? metalc29 B NE2 HIS 378 B HIS 378 1_555 K ZN ZN . B ZN 1634 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? metalc ? metalc30 B NE2 HIS 384 B HIS 384 1_555 K ZN ZN . B ZN 1634 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.705 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1GXD _atom_sites.fract_transf_matrix[1][1] 0.013211 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00267 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005236 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 SO4 A 1 1632 1632 SO4 SO4 . F 4 ZN A 1 1633 1633 ZN ZN . G 4 ZN A 1 1634 1634 ZN ZN . H 5 CA A 1 1635 1635 CA CA . I 3 SO4 B 1 1632 1632 SO4 SO4 . J 4 ZN B 1 1633 1633 ZN ZN . K 4 ZN B 1 1634 1634 ZN ZN . L 5 CA B 1 1635 1635 CA CA . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 4 _atom_site.Cartn_x 45.385 _atom_site.Cartn_y 111.12 _atom_site.Cartn_z 34.425 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 50.43 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 1633 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #