data_1GXF
#
_model_server_result.job_id            -7bCE-Ap6XopK2DCwfFRfA 
_model_server_result.datetime_utc      '2024-11-23 01:35:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1gxf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1492}' 
#
_entry.id    1GXF 
#
_exptl.entry_id    1GXF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1GXF 
_cell.length_a            93.1 
_cell.length_b            93.1 
_cell.length_c            156.6 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1GXF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        78 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 53 A CYS 53 1_555 F C26 QUM . A QUM 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.791 ? 
covale ? covale2 A OE2 GLU 113 A GLU 113 1_555 E C28 QUM . A QUM 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? 
covale ? covale3 A OD2 ASP 117 A ASP 117 1_555 E C26 QUM . A QUM 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? 
covale ? covale4 B SG CYS 53 B CYS 53 1_555 I C26 QUM . B QUM 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.798 ? 
covale ? covale5 B OE2 GLU 113 B GLU 113 1_555 H C28 QUM . B QUM 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? 
covale ? covale6 B OD2 ASP 117 B ASP 117 1_555 H C26 QUM . B QUM 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     1GXF 
_atom_sites.fract_transf_matrix[1][1]    0.010741 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010741 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006386 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FAD A 1 1492 1492 FAD FAD . 
D 3 MAE A 1 1500 1500 MAE MAE . 
E 4 QUM A 1 1501 1501 QUM QUM . 
F 4 QUM A 1 1502 1502 QUM QUM . 
G 2 FAD B 1 1492 1492 FAD FAD . 
H 4 QUM B 1 1501 1501 QUM QUM . 
I 4 QUM B 1 1502 1502 QUM QUM . 
J 5 HOH A 1 2001 2001 HOH HOH . 
J 5 HOH A 2 2002 2002 HOH HOH . 
J 5 HOH A 3 2003 2003 HOH HOH . 
J 5 HOH A 4 2004 2004 HOH HOH . 
J 5 HOH A 5 2005 2005 HOH HOH . 
J 5 HOH A 6 2006 2006 HOH HOH . 
J 5 HOH A 7 2007 2007 HOH HOH . 
J 5 HOH A 8 2008 2008 HOH HOH . 
J 5 HOH A 9 2009 2009 HOH HOH . 
J 5 HOH A 10 2010 2010 HOH HOH . 
J 5 HOH A 11 2011 2011 HOH HOH . 
J 5 HOH A 12 2012 2012 HOH HOH . 
J 5 HOH A 13 2013 2013 HOH HOH . 
J 5 HOH A 14 2014 2014 HOH HOH . 
J 5 HOH A 15 2015 2015 HOH HOH . 
J 5 HOH A 16 2016 2016 HOH HOH . 
J 5 HOH A 17 2017 2017 HOH HOH . 
J 5 HOH A 18 2018 2018 HOH HOH . 
J 5 HOH A 19 2019 2019 HOH HOH . 
J 5 HOH A 20 2020 2020 HOH HOH . 
J 5 HOH A 21 2021 2021 HOH HOH . 
J 5 HOH A 22 2022 2022 HOH HOH . 
J 5 HOH A 23 2023 2023 HOH HOH . 
J 5 HOH A 24 2024 2024 HOH HOH . 
J 5 HOH A 25 2025 2025 HOH HOH . 
J 5 HOH A 26 2026 2026 HOH HOH . 
J 5 HOH A 27 2027 2027 HOH HOH . 
J 5 HOH A 28 2028 2028 HOH HOH . 
K 5 HOH B 1 2001 2001 HOH HOH . 
K 5 HOH B 2 2002 2002 HOH HOH . 
K 5 HOH B 3 2003 2003 HOH HOH . 
K 5 HOH B 4 2004 2004 HOH HOH . 
K 5 HOH B 5 2005 2005 HOH HOH . 
K 5 HOH B 6 2006 2006 HOH HOH . 
K 5 HOH B 7 2007 2007 HOH HOH . 
K 5 HOH B 8 2008 2008 HOH HOH . 
K 5 HOH B 9 2009 2009 HOH HOH . 
K 5 HOH B 10 2010 2010 HOH HOH . 
K 5 HOH B 11 2011 2011 HOH HOH . 
K 5 HOH B 12 2012 2012 HOH HOH . 
K 5 HOH B 13 2013 2013 HOH HOH . 
K 5 HOH B 14 2014 2014 HOH HOH . 
K 5 HOH B 15 2015 2015 HOH HOH . 
K 5 HOH B 16 2016 2016 HOH HOH . 
K 5 HOH B 17 2017 2017 HOH HOH . 
K 5 HOH B 18 2018 2018 HOH HOH . 
K 5 HOH B 19 2019 2019 HOH HOH . 
K 5 HOH B 20 2020 2020 HOH HOH . 
K 5 HOH B 21 2021 2021 HOH HOH . 
K 5 HOH B 22 2022 2022 HOH HOH . 
K 5 HOH B 23 2023 2023 HOH HOH . 
K 5 HOH B 24 2024 2024 HOH HOH . 
K 5 HOH B 25 2025 2025 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . C 2 22.001 10.098 -16.776 1 34.42 ? PA FAD 1492 A 1 
HETATM 2 O O1A FAD . . . C 2 22.557 9.451 -17.986 1 34.15 ? O1A FAD 1492 A 1 
HETATM 3 O O2A FAD . . . C 2 22.141 9.359 -15.521 1 35.25 ? O2A FAD 1492 A 1 
HETATM 4 O O5B FAD . . . C 2 20.46 10.39 -17.008 1 34.67 ? O5B FAD 1492 A 1 
HETATM 5 C C5B FAD . . . C 2 19.825 10.318 -18.261 1 34.47 ? C5B FAD 1492 A 1 
HETATM 6 C C4B FAD . . . C 2 18.435 9.759 -17.988 1 36.5 ? C4B FAD 1492 A 1 
HETATM 7 O O4B FAD . . . C 2 17.554 10.301 -18.93 1 38.11 ? O4B FAD 1492 A 1 
HETATM 8 C C3B FAD . . . C 2 18.393 8.245 -18.203 1 37.82 ? C3B FAD 1492 A 1 
HETATM 9 O O3B FAD . . . C 2 17.914 7.66 -16.989 1 38.46 ? O3B FAD 1492 A 1 
HETATM 10 C C2B FAD . . . C 2 17.403 8.067 -19.369 1 38.91 ? C2B FAD 1492 A 1 
HETATM 11 O O2B FAD . . . C 2 16.563 6.919 -19.305 1 38.54 ? O2B FAD 1492 A 1 
HETATM 12 C C1B FAD . . . C 2 16.626 9.317 -19.446 1 40.06 ? C1B FAD 1492 A 1 
HETATM 13 N N9A FAD . . . C 2 16.158 9.858 -20.75 1 43.09 ? N9A FAD 1492 A 1 
HETATM 14 C C8A FAD . . . C 2 16.836 9.887 -21.949 1 43.42 ? C8A FAD 1492 A 1 
HETATM 15 N N7A FAD . . . C 2 16.225 10.613 -22.843 1 45.52 ? N7A FAD 1492 A 1 
HETATM 16 C C5A FAD . . . C 2 14.932 10.665 -22.356 1 46.78 ? C5A FAD 1492 A 1 
HETATM 17 C C6A FAD . . . C 2 13.743 11.086 -22.937 1 49.03 ? C6A FAD 1492 A 1 
HETATM 18 N N6A FAD . . . C 2 13.695 11.549 -24.183 1 50.3 ? N6A FAD 1492 A 1 
HETATM 19 N N1A FAD . . . C 2 12.636 11.011 -22.188 1 50.73 ? N1A FAD 1492 A 1 
HETATM 20 C C2A FAD . . . C 2 12.712 10.548 -20.949 1 49.82 ? C2A FAD 1492 A 1 
HETATM 21 N N3A FAD . . . C 2 13.767 10.12 -20.285 1 47.3 ? N3A FAD 1492 A 1 
HETATM 22 C C4A FAD . . . C 2 14.869 10.209 -21.068 1 45.51 ? C4A FAD 1492 A 1 
HETATM 23 N N1 FAD . . . C 2 31.174 8.611 -13.821 1 28.9 ? N1 FAD 1492 A 1 
HETATM 24 C C2 FAD . . . C 2 31.914 8.767 -12.644 1 30.19 ? C2 FAD 1492 A 1 
HETATM 25 O O2 FAD . . . C 2 32.011 9.873 -12.122 1 28.1 ? O2 FAD 1492 A 1 
HETATM 26 N N3 FAD . . . C 2 32.53 7.694 -12.074 1 29 ? N3 FAD 1492 A 1 
HETATM 27 C C4 FAD . . . C 2 32.459 6.446 -12.607 1 30.85 ? C4 FAD 1492 A 1 
HETATM 28 O O4 FAD . . . C 2 33.024 5.503 -12.071 1 34.32 ? O4 FAD 1492 A 1 
HETATM 29 C C4X FAD . . . C 2 31.661 6.308 -13.873 1 28.48 ? C4X FAD 1492 A 1 
HETATM 30 N N5 FAD . . . C 2 31.544 5.123 -14.446 1 28.26 ? N5 FAD 1492 A 1 
HETATM 31 C C5X FAD . . . C 2 30.843 4.953 -15.559 1 25.95 ? C5X FAD 1492 A 1 
HETATM 32 C C6 FAD . . . C 2 30.75 3.668 -16.115 1 24.37 ? C6 FAD 1492 A 1 
HETATM 33 C C7 FAD . . . C 2 30.045 3.464 -17.241 1 24.06 ? C7 FAD 1492 A 1 
HETATM 34 C C7M FAD . . . C 2 29.923 2.077 -17.879 1 23.81 ? C7M FAD 1492 A 1 
HETATM 35 C C8 FAD . . . C 2 29.384 4.584 -17.862 1 23.53 ? C8 FAD 1492 A 1 
HETATM 36 C C8M FAD . . . C 2 28.596 4.359 -19.116 1 16.76 ? C8M FAD 1492 A 1 
HETATM 37 C C9 FAD . . . C 2 29.46 5.82 -17.34 1 23.78 ? C9 FAD 1492 A 1 
HETATM 38 C C9A FAD . . . C 2 30.195 6.061 -16.165 1 25.38 ? C9A FAD 1492 A 1 
HETATM 39 N N10 FAD . . . C 2 30.315 7.287 -15.573 1 26.67 ? N10 FAD 1492 A 1 
HETATM 40 C C10 FAD . . . C 2 31.04 7.444 -14.429 1 27.99 ? C10 FAD 1492 A 1 
HETATM 41 C C1' FAD . . . C 2 29.63 8.483 -16.209 1 27.51 ? C1' FAD 1492 A 1 
HETATM 42 C C2' FAD . . . C 2 28.468 9.012 -15.403 1 28.69 ? C2' FAD 1492 A 1 
HETATM 43 O O2' FAD . . . C 2 27.606 7.895 -15.191 1 31.63 ? O2' FAD 1492 A 1 
HETATM 44 C C3' FAD . . . C 2 27.714 10.027 -16.237 1 29.76 ? C3' FAD 1492 A 1 
HETATM 45 O O3' FAD . . . C 2 28.638 11.074 -16.509 1 27.22 ? O3' FAD 1492 A 1 
HETATM 46 C C4' FAD . . . C 2 26.529 10.552 -15.493 1 31.09 ? C4' FAD 1492 A 1 
HETATM 47 O O4' FAD . . . C 2 25.613 9.484 -15.181 1 33.26 ? O4' FAD 1492 A 1 
HETATM 48 C C5' FAD . . . C 2 25.696 11.469 -16.347 1 31.95 ? C5' FAD 1492 A 1 
HETATM 49 O O5' FAD . . . C 2 24.569 11.819 -15.526 1 33.99 ? O5' FAD 1492 A 1 
HETATM 50 P P FAD . . . C 2 23.349 12.527 -16.253 1 34.32 ? P FAD 1492 A 1 
HETATM 51 O O1P FAD . . . C 2 22.301 12.853 -15.258 1 36.02 ? O1P FAD 1492 A 1 
HETATM 52 O O2P FAD . . . C 2 23.876 13.623 -17.094 1 31.03 ? O2P FAD 1492 A 1 
HETATM 53 O O3P FAD . . . C 2 22.881 11.333 -17.141 1 35.81 ? O3P FAD 1492 A 1 
#
_model_server_stats.io_time_ms              48 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           53 
#