data_1GXF
#
_model_server_result.job_id            n7LB9SUzQDqY_bW5_tMAxQ 
_model_server_result.datetime_utc      '2024-11-23 01:54:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1gxf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":1501}' 
#
_entry.id    1GXF 
#
_exptl.entry_id    1GXF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              468.847 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'QUINACRINE MUSTARD' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1GXF 
_cell.length_a            93.1 
_cell.length_b            93.1 
_cell.length_c            156.6 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1GXF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        78 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 H N N 
? 4 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 53 A CYS 53 1_555 F C26 QUM . A QUM 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.791 ? 
covale ? covale2 A OE2 GLU 113 A GLU 113 1_555 E C28 QUM . A QUM 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? 
covale ? covale3 A OD2 ASP 117 A ASP 117 1_555 E C26 QUM . A QUM 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? 
covale ? covale4 B SG CYS 53 B CYS 53 1_555 I C26 QUM . B QUM 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.798 ? 
covale ? covale5 B OE2 GLU 113 B GLU 113 1_555 H C28 QUM . B QUM 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? 
covale ? covale6 B OD2 ASP 117 B ASP 117 1_555 H C26 QUM . B QUM 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? 
#
_chem_comp.formula           'C23 H28 Cl3 N3 O' 
_chem_comp.formula_weight    468.847 
_chem_comp.id                QUM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'QUINACRINE MUSTARD' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     N-{(1S)-4-[BIS(2-CHLOROETHYL)AMINO]-1-METHYLBUTYL}-N-(6-CHLORO-2-METHOXY-9-ACRIDINYL)AMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 C3 QUM doub 379 n y 
C2 C1 QUM sing 380 n y 
C2 O15 QUM sing 381 n n 
C3 C4 QUM sing 382 n y 
C3 H3 QUM sing 383 n n 
C4 C11 QUM doub 384 n y 
C4 H4 QUM sing 385 n n 
C11 C12 QUM sing 386 n y 
C11 N10 QUM sing 387 n y 
C12 C1 QUM doub 388 n y 
C12 C9 QUM sing 389 n y 
C1 H1 QUM sing 390 n n 
N10 C14 QUM sing 391 n y 
N10 H10 QUM sing 392 n n 
C14 C13 QUM doub 393 n y 
C14 C5 QUM sing 394 n y 
C13 C9 QUM sing 395 n y 
C13 C8 QUM sing 396 n y 
C9 N18 QUM doub 397 z n 
C5 C6 QUM doub 398 n y 
C5 H5 QUM sing 399 n n 
C6 C7 QUM sing 400 n y 
C6 CL1 QUM sing 401 n n 
C7 C8 QUM doub 402 n y 
C7 H7 QUM sing 403 n n 
C8 H8 QUM sing 404 n n 
N18 C19 QUM sing 405 n n 
C19 C20 QUM sing 406 n n 
C19 C21 QUM sing 407 n n 
C19 H19 QUM sing 408 n n 
C20 H201 QUM sing 409 n n 
C20 H202 QUM sing 410 n n 
C20 H203 QUM sing 411 n n 
C21 C22 QUM sing 412 n n 
C21 H211 QUM sing 413 n n 
C21 H212 QUM sing 414 n n 
C22 C23 QUM sing 415 n n 
C22 H221 QUM sing 416 n n 
C22 H222 QUM sing 417 n n 
C23 N24 QUM sing 418 n n 
C23 H231 QUM sing 419 n n 
C23 H232 QUM sing 420 n n 
N24 C27 QUM sing 421 n n 
N24 C25 QUM sing 422 n n 
C27 C28 QUM sing 423 n n 
C27 H271 QUM sing 424 n n 
C27 H272 QUM sing 425 n n 
C25 C26 QUM sing 426 n n 
C25 H251 QUM sing 427 n n 
C25 H252 QUM sing 428 n n 
C28 CL3 QUM sing 429 n n 
C28 H281 QUM sing 430 n n 
C28 H282 QUM sing 431 n n 
C26 CL2 QUM sing 432 n n 
C26 H261 QUM sing 433 n n 
C26 H262 QUM sing 434 n n 
O15 C17 QUM sing 435 n n 
C17 H171 QUM sing 436 n n 
C17 H172 QUM sing 437 n n 
C17 H173 QUM sing 438 n n 
#
_atom_sites.entry_id                     1GXF 
_atom_sites.fract_transf_matrix[1][1]    0.010741 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010741 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006386 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FAD A 1 1492 1492 FAD FAD . 
D 3 MAE A 1 1500 1500 MAE MAE . 
E 4 QUM A 1 1501 1501 QUM QUM . 
F 4 QUM A 1 1502 1502 QUM QUM . 
G 2 FAD B 1 1492 1492 FAD FAD . 
H 4 QUM B 1 1501 1501 QUM QUM . 
I 4 QUM B 1 1502 1502 QUM QUM . 
J 5 HOH A 1 2001 2001 HOH HOH . 
J 5 HOH A 2 2002 2002 HOH HOH . 
J 5 HOH A 3 2003 2003 HOH HOH . 
J 5 HOH A 4 2004 2004 HOH HOH . 
J 5 HOH A 5 2005 2005 HOH HOH . 
J 5 HOH A 6 2006 2006 HOH HOH . 
J 5 HOH A 7 2007 2007 HOH HOH . 
J 5 HOH A 8 2008 2008 HOH HOH . 
J 5 HOH A 9 2009 2009 HOH HOH . 
J 5 HOH A 10 2010 2010 HOH HOH . 
J 5 HOH A 11 2011 2011 HOH HOH . 
J 5 HOH A 12 2012 2012 HOH HOH . 
J 5 HOH A 13 2013 2013 HOH HOH . 
J 5 HOH A 14 2014 2014 HOH HOH . 
J 5 HOH A 15 2015 2015 HOH HOH . 
J 5 HOH A 16 2016 2016 HOH HOH . 
J 5 HOH A 17 2017 2017 HOH HOH . 
J 5 HOH A 18 2018 2018 HOH HOH . 
J 5 HOH A 19 2019 2019 HOH HOH . 
J 5 HOH A 20 2020 2020 HOH HOH . 
J 5 HOH A 21 2021 2021 HOH HOH . 
J 5 HOH A 22 2022 2022 HOH HOH . 
J 5 HOH A 23 2023 2023 HOH HOH . 
J 5 HOH A 24 2024 2024 HOH HOH . 
J 5 HOH A 25 2025 2025 HOH HOH . 
J 5 HOH A 26 2026 2026 HOH HOH . 
J 5 HOH A 27 2027 2027 HOH HOH . 
J 5 HOH A 28 2028 2028 HOH HOH . 
K 5 HOH B 1 2001 2001 HOH HOH . 
K 5 HOH B 2 2002 2002 HOH HOH . 
K 5 HOH B 3 2003 2003 HOH HOH . 
K 5 HOH B 4 2004 2004 HOH HOH . 
K 5 HOH B 5 2005 2005 HOH HOH . 
K 5 HOH B 6 2006 2006 HOH HOH . 
K 5 HOH B 7 2007 2007 HOH HOH . 
K 5 HOH B 8 2008 2008 HOH HOH . 
K 5 HOH B 9 2009 2009 HOH HOH . 
K 5 HOH B 10 2010 2010 HOH HOH . 
K 5 HOH B 11 2011 2011 HOH HOH . 
K 5 HOH B 12 2012 2012 HOH HOH . 
K 5 HOH B 13 2013 2013 HOH HOH . 
K 5 HOH B 14 2014 2014 HOH HOH . 
K 5 HOH B 15 2015 2015 HOH HOH . 
K 5 HOH B 16 2016 2016 HOH HOH . 
K 5 HOH B 17 2017 2017 HOH HOH . 
K 5 HOH B 18 2018 2018 HOH HOH . 
K 5 HOH B 19 2019 2019 HOH HOH . 
K 5 HOH B 20 2020 2020 HOH HOH . 
K 5 HOH B 21 2021 2021 HOH HOH . 
K 5 HOH B 22 2022 2022 HOH HOH . 
K 5 HOH B 23 2023 2023 HOH HOH . 
K 5 HOH B 24 2024 2024 HOH HOH . 
K 5 HOH B 25 2025 2025 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 QUM . . . H 4 69.645 7.854 5.335 0.5 54.15 ? C2 QUM 1501 B 1 
HETATM 2 C C3 QUM . . . H 4 69.017 8.917 6.01 0.5 54.27 ? C3 QUM 1501 B 1 
HETATM 3 C C4 QUM . . . H 4 68.386 9.88 5.304 0.5 54.06 ? C4 QUM 1501 B 1 
HETATM 4 C C11 QUM . . . H 4 68.339 9.832 3.893 0.5 53.47 ? C11 QUM 1501 B 1 
HETATM 5 C C12 QUM . . . H 4 68.963 8.765 3.225 0.5 53.63 ? C12 QUM 1501 B 1 
HETATM 6 C C1 QUM . . . H 4 69.622 7.763 3.983 0.5 53.72 ? C1 QUM 1501 B 1 
HETATM 7 N N10 QUM . . . H 4 67.697 10.809 3.186 0.5 53.55 ? N10 QUM 1501 B 1 
HETATM 8 C C14 QUM . . . H 4 67.637 10.789 1.827 0.5 55.52 ? C14 QUM 1501 B 1 
HETATM 9 C C13 QUM . . . H 4 68.249 9.736 1.089 0.5 55.45 ? C13 QUM 1501 B 1 
HETATM 10 C C9 QUM . . . H 4 68.932 8.691 1.782 0.5 54.77 ? C9 QUM 1501 B 1 
HETATM 11 C C5 QUM . . . H 4 66.953 11.83 1.157 0.5 57.2 ? C5 QUM 1501 B 1 
HETATM 12 C C6 QUM . . . H 4 66.904 11.82 -0.207 0.5 58.21 ? C6 QUM 1501 B 1 
HETATM 13 C C7 QUM . . . H 4 67.484 10.79 -0.962 0.5 57.96 ? C7 QUM 1501 B 1 
HETATM 14 C C8 QUM . . . H 4 68.143 9.786 -0.335 0.5 56.77 ? C8 QUM 1501 B 1 
HETATM 15 N N18 QUM . . . H 4 69.552 7.641 1.216 0.5 55.76 ? N18 QUM 1501 B 1 
HETATM 16 C C19 QUM . . . H 4 69.766 7.182 -0.121 0.5 57.08 ? C19 QUM 1501 B 1 
HETATM 17 C C20 QUM . . . H 4 69.399 8.276 -1.122 0.5 55.97 ? C20 QUM 1501 B 1 
HETATM 18 C C21 QUM . . . H 4 71.251 6.784 -0.29 0.5 59.14 ? C21 QUM 1501 B 1 
HETATM 19 C C22 QUM . . . H 4 71.64 5.417 0.285 0.5 62.39 ? C22 QUM 1501 B 1 
HETATM 20 C C23 QUM . . . H 4 73.121 5.16 0.017 0.5 64.7 ? C23 QUM 1501 B 1 
HETATM 21 N N24 QUM . . . H 4 73.39 4.072 -0.93 0.5 67.06 ? N24 QUM 1501 B 1 
HETATM 22 C C27 QUM . . . H 4 73.164 2.765 -0.184 0.5 68.35 ? C27 QUM 1501 B 1 
HETATM 23 C C25 QUM . . . H 4 74.64 4.228 -1.708 0.5 67.17 ? C25 QUM 1501 B 1 
HETATM 24 C C28 QUM . . . H 4 72.764 1.622 -0.975 0.5 71.59 ? C28 QUM 1501 B 1 
HETATM 25 C C26 QUM . . . H 4 75.458 2.974 -1.875 0.5 69.25 ? C26 QUM 1501 B 1 
HETATM 26 CL CL1 QUM . . . H 4 66.146 13.139 -1.029 0.5 59.19 ? CL1 QUM 1501 B 1 
HETATM 27 O O15 QUM . . . H 4 70.289 6.933 6.139 0.5 55.67 ? O15 QUM 1501 B 1 
HETATM 28 C C17 QUM . . . H 4 70.028 5.577 5.799 0.5 55.9 ? C17 QUM 1501 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           28 
#