data_1GYM # _model_server_result.job_id B0u2U7J9_saB-uFtz7PqkA _model_server_result.datetime_utc '2024-11-12 20:42:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1gym # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":702}' # _entry.id 1GYM # _exptl.entry_id 1GYM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 341.312 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1R,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl 2-amino-2-deoxy-alpha-D-glucopyranoside' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1GYM _cell.length_a 45.2 _cell.length_b 46.5 _cell.length_c 161 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GYM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H23 N O10' _chem_comp.formula_weight 341.312 _chem_comp.id MYG _chem_comp.mon_nstd_flag n _chem_comp.name '(1R,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl 2-amino-2-deoxy-alpha-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'GLUCOSAMINYL-(ALPHA-6)-D-MYO-INOSITOL;(1R,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl 2-amino-2-deoxy-alpha-D-glucoside;(1R,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl 2-amino-2-deoxy-D-glucoside;(1R,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl 2-amino-2-deoxy-glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1A C2A MYG sing 224 n n C1A C6A MYG sing 225 n n C1A O1A MYG sing 226 n n C1A H1A MYG sing 227 n n C2A C3A MYG sing 228 n n C2A O2 MYG sing 229 n n C2A H2A MYG sing 230 n n C3A C4A MYG sing 231 n n C3A O3A MYG sing 232 n n C3A H3A MYG sing 233 n n C4A C5A MYG sing 234 n n C4A O4A MYG sing 235 n n C4A H4A MYG sing 236 n n C5A C6A MYG sing 237 n n C5A O5A MYG sing 238 n n C5A H5A MYG sing 239 n n C6A O1 MYG sing 240 n n C6A H6 MYG sing 241 n n C1 C2 MYG sing 242 n n C1 O1 MYG sing 243 n n C1 O5 MYG sing 244 n n C1 H1 MYG sing 245 n n C2 C3 MYG sing 246 n n C2 N2 MYG sing 247 n n C2 H2 MYG sing 248 n n C3 C4 MYG sing 249 n n C3 O3 MYG sing 250 n n C3 H3 MYG sing 251 n n C4 C5 MYG sing 252 n n C4 O4 MYG sing 253 n n C4 H4 MYG sing 254 n n C5 C6 MYG sing 255 n n C5 O5 MYG sing 256 n n C5 H5 MYG sing 257 n n C6 O6 MYG sing 258 n n C6 H61 MYG sing 259 n n C6 H62 MYG sing 260 n n N2 HN21 MYG sing 261 n n N2 HN22 MYG sing 262 n n O1A HO1 MYG sing 263 n n O2 HO2 MYG sing 264 n n O3A HO3A MYG sing 265 n n O4A HO4A MYG sing 266 n n O5A HO5 MYG sing 267 n n O3 HO3 MYG sing 268 n n O4 HO4 MYG sing 269 n n O6 HO6 MYG sing 270 n n # _pdbx_chem_comp_identifier.comp_id MYG _pdbx_chem_comp_identifier.identifier glucosaminyl-(alpha-6)-D-myo-inositol _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 1GYM _atom_sites.fract_transf_matrix[1][1] 0.022124 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021505 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006211 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MYG A 1 702 702 MYG MYG . C 3 HOH A 1 801 801 HOH HOH . C 3 HOH A 2 802 802 HOH HOH . C 3 HOH A 3 803 803 HOH HOH . C 3 HOH A 4 804 804 HOH HOH . C 3 HOH A 5 805 805 HOH HOH . C 3 HOH A 6 806 806 HOH HOH . C 3 HOH A 7 807 807 HOH HOH . C 3 HOH A 8 811 811 HOH HOH . C 3 HOH A 9 812 812 HOH HOH . C 3 HOH A 10 813 813 HOH HOH . C 3 HOH A 11 815 815 HOH HOH . C 3 HOH A 12 818 818 HOH HOH . C 3 HOH A 13 819 819 HOH HOH . C 3 HOH A 14 820 820 HOH HOH . C 3 HOH A 15 821 821 HOH HOH . C 3 HOH A 16 822 822 HOH HOH . C 3 HOH A 17 826 826 HOH HOH . C 3 HOH A 18 831 831 HOH HOH . C 3 HOH A 19 832 832 HOH HOH . C 3 HOH A 20 833 833 HOH HOH . C 3 HOH A 21 834 834 HOH HOH . C 3 HOH A 22 836 836 HOH HOH . C 3 HOH A 23 841 841 HOH HOH . C 3 HOH A 24 842 842 HOH HOH . C 3 HOH A 25 845 845 HOH HOH . C 3 HOH A 26 848 848 HOH HOH . C 3 HOH A 27 850 850 HOH HOH . C 3 HOH A 28 852 852 HOH HOH . C 3 HOH A 29 854 854 HOH HOH . C 3 HOH A 30 855 855 HOH HOH . C 3 HOH A 31 857 857 HOH HOH . C 3 HOH A 32 859 859 HOH HOH . C 3 HOH A 33 861 861 HOH HOH . C 3 HOH A 34 863 863 HOH HOH . C 3 HOH A 35 866 866 HOH HOH . C 3 HOH A 36 868 868 HOH HOH . C 3 HOH A 37 869 869 HOH HOH . C 3 HOH A 38 872 872 HOH HOH . C 3 HOH A 39 873 873 HOH HOH . C 3 HOH A 40 875 875 HOH HOH . C 3 HOH A 41 882 882 HOH HOH . C 3 HOH A 42 885 885 HOH HOH . C 3 HOH A 43 890 890 HOH HOH . C 3 HOH A 44 891 891 HOH HOH . C 3 HOH A 45 892 892 HOH HOH . C 3 HOH A 46 897 897 HOH HOH . C 3 HOH A 47 898 898 HOH HOH . C 3 HOH A 48 900 900 HOH HOH . C 3 HOH A 49 902 902 HOH HOH . C 3 HOH A 50 905 905 HOH HOH . C 3 HOH A 51 907 907 HOH HOH . C 3 HOH A 52 913 913 HOH HOH . C 3 HOH A 53 917 917 HOH HOH . C 3 HOH A 54 918 918 HOH HOH . C 3 HOH A 55 919 919 HOH HOH . C 3 HOH A 56 921 921 HOH HOH . C 3 HOH A 57 922 922 HOH HOH . C 3 HOH A 58 923 923 HOH HOH . C 3 HOH A 59 925 925 HOH HOH . C 3 HOH A 60 927 927 HOH HOH . C 3 HOH A 61 928 928 HOH HOH . C 3 HOH A 62 929 929 HOH HOH . C 3 HOH A 63 935 935 HOH HOH . C 3 HOH A 64 936 936 HOH HOH . C 3 HOH A 65 937 937 HOH HOH . C 3 HOH A 66 941 941 HOH HOH . C 3 HOH A 67 942 942 HOH HOH . C 3 HOH A 68 1002 1002 HOH HOH . C 3 HOH A 69 1006 1006 HOH HOH . C 3 HOH A 70 1007 1007 HOH HOH . C 3 HOH A 71 1012 1012 HOH HOH . C 3 HOH A 72 1014 1014 HOH HOH . C 3 HOH A 73 1015 1015 HOH HOH . C 3 HOH A 74 1018 1018 HOH HOH . C 3 HOH A 75 1020 1020 HOH HOH . C 3 HOH A 76 1021 1021 HOH HOH . C 3 HOH A 77 1022 1022 HOH HOH . C 3 HOH A 78 1025 1025 HOH HOH . C 3 HOH A 79 1027 1027 HOH HOH . C 3 HOH A 80 1029 1029 HOH HOH . C 3 HOH A 81 1034 1034 HOH HOH . C 3 HOH A 82 1042 1042 HOH HOH . C 3 HOH A 83 1043 1043 HOH HOH . C 3 HOH A 84 1046 1046 HOH HOH . C 3 HOH A 85 1051 1051 HOH HOH . C 3 HOH A 86 1056 1056 HOH HOH . C 3 HOH A 87 1074 1074 HOH HOH . C 3 HOH A 88 1076 1076 HOH HOH . C 3 HOH A 89 1088 1088 HOH HOH . C 3 HOH A 90 1106 1106 HOH HOH . C 3 HOH A 91 1121 1121 HOH HOH . C 3 HOH A 92 1127 1127 HOH HOH . C 3 HOH A 93 1128 1128 HOH HOH . C 3 HOH A 94 1200 1200 HOH HOH . C 3 HOH A 95 1201 1201 HOH HOH . C 3 HOH A 96 1202 1202 HOH HOH . C 3 HOH A 97 1203 1203 HOH HOH . C 3 HOH A 98 1204 1204 HOH HOH . C 3 HOH A 99 1205 1205 HOH HOH . C 3 HOH A 100 1206 1206 HOH HOH . C 3 HOH A 101 1207 1207 HOH HOH . C 3 HOH A 102 1208 1208 HOH HOH . C 3 HOH A 103 1210 1210 HOH HOH . C 3 HOH A 104 1213 1213 HOH HOH . C 3 HOH A 105 1214 1214 HOH HOH . C 3 HOH A 106 1217 1217 HOH HOH . C 3 HOH A 107 1220 1220 HOH HOH . C 3 HOH A 108 1221 1221 HOH HOH . C 3 HOH A 109 1222 1222 HOH HOH . C 3 HOH A 110 1224 1224 HOH HOH . C 3 HOH A 111 1228 1228 HOH HOH . C 3 HOH A 112 1230 1230 HOH HOH . C 3 HOH A 113 1246 1246 HOH HOH . C 3 HOH A 114 1300 1300 HOH HOH . C 3 HOH A 115 1301 1301 HOH HOH . C 3 HOH A 116 1303 1303 HOH HOH . C 3 HOH A 117 1304 1304 HOH HOH . C 3 HOH A 118 1308 1308 HOH HOH . C 3 HOH A 119 1312 1312 HOH HOH . C 3 HOH A 120 1314 1314 HOH HOH . C 3 HOH A 121 1317 1317 HOH HOH . C 3 HOH A 122 1318 1318 HOH HOH . C 3 HOH A 123 1320 1320 HOH HOH . C 3 HOH A 124 1324 1324 HOH HOH . C 3 HOH A 125 1326 1326 HOH HOH . C 3 HOH A 126 1327 1327 HOH HOH . C 3 HOH A 127 1328 1328 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1A MYG . . . B 2 20.429 26.715 102.595 1 19.59 ? C1A MYG 702 A 1 HETATM 2 C C2A MYG . . . B 2 20.166 28.255 102.773 1 19.99 ? C2A MYG 702 A 1 HETATM 3 C C3A MYG . . . B 2 21.511 28.983 103.062 1 17.37 ? C3A MYG 702 A 1 HETATM 4 C C4A MYG . . . B 2 22.516 28.677 101.933 1 16.54 ? C4A MYG 702 A 1 HETATM 5 C C5A MYG . . . B 2 22.818 27.166 101.944 1 17.13 ? C5A MYG 702 A 1 HETATM 6 C C6A MYG . . . B 2 21.541 26.384 101.572 1 21.82 ? C6A MYG 702 A 1 HETATM 7 C C1 MYG . . . B 2 22.02 24.33 100.423 1 35.63 ? C1 MYG 702 A 1 HETATM 8 C C2 MYG . . . B 2 21.008 23.153 100.316 1 39.38 ? C2 MYG 702 A 1 HETATM 9 C C3 MYG . . . B 2 21.495 21.946 101.179 1 41.87 ? C3 MYG 702 A 1 HETATM 10 C C4 MYG . . . B 2 22.882 21.539 100.684 1 41.82 ? C4 MYG 702 A 1 HETATM 11 C C5 MYG . . . B 2 23.847 22.7 100.973 1 41.67 ? C5 MYG 702 A 1 HETATM 12 C C6 MYG . . . B 2 25.297 22.402 100.469 1 44.94 ? C6 MYG 702 A 1 HETATM 13 N N2 MYG . . . B 2 19.665 23.62 100.757 1 45.09 ? N2 MYG 702 A 1 HETATM 14 O O1A MYG . . . B 2 19.248 26.081 102.203 1 17.47 ? O1A MYG 702 A 1 HETATM 15 O O2 MYG . . . B 2 19.562 28.788 101.615 1 20.1 ? O2 MYG 702 A 1 HETATM 16 O O3A MYG . . . B 2 21.305 30.4 103.231 1 21.31 ? O3A MYG 702 A 1 HETATM 17 O O4A MYG . . . B 2 23.733 29.369 102.183 1 15.38 ? O4A MYG 702 A 1 HETATM 18 O O5A MYG . . . B 2 23.88 26.875 101.044 1 15.19 ? O5A MYG 702 A 1 HETATM 19 O O1 MYG . . . B 2 21.814 24.984 101.668 1 26.79 ? O1 MYG 702 A 1 HETATM 20 O O3 MYG . . . B 2 20.604 20.821 101.078 1 48.27 ? O3 MYG 702 A 1 HETATM 21 O O4 MYG . . . B 2 23.321 20.357 101.341 1 42.44 ? O4 MYG 702 A 1 HETATM 22 O O5 MYG . . . B 2 23.396 23.87 100.247 1 40.41 ? O5 MYG 702 A 1 HETATM 23 O O6 MYG . . . B 2 26.115 21.671 101.547 1 45.41 ? O6 MYG 702 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 4 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 220 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #