data_1GYQ
#
_model_server_result.job_id            rnvuQ4bjzOpg7U0cxI56nA 
_model_server_result.datetime_utc      '2025-07-03 23:17:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1gyq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":361}' 
#
_entry.id    1GYQ 
#
_exptl.entry_id    1GYQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              753.548 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N6-BENZYL-NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1GYQ 
_cell.length_a            97.33 
_cell.length_b            125.81 
_cell.length_c            137.79 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1GYQ 
_symmetry.cell_setting             orthorhombic 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C28 H33 N7 O14 P2' 
_chem_comp.formula_weight    753.548 
_chem_comp.id                NBD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N6-BENZYL-NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O11 NBD doub 235 n n 
PA O12 NBD sing 236 n n 
PA O5B NBD sing 237 n n 
PA O3 NBD sing 238 n n 
O12 HOA2 NBD sing 239 n n 
O5B C5B NBD sing 240 n n 
C5B C4B NBD sing 241 n n 
C5B H51A NBD sing 242 n n 
C5B H52A NBD sing 243 n n 
C4B O4B NBD sing 244 n n 
C4B C3B NBD sing 245 n n 
C4B H4B NBD sing 246 n n 
O4B C1B NBD sing 247 n n 
C3B O3B NBD sing 248 n n 
C3B C2B NBD sing 249 n n 
C3B H3B NBD sing 250 n n 
O3B HO3A NBD sing 251 n n 
C2B O2B NBD sing 252 n n 
C2B C1B NBD sing 253 n n 
C2B H2B NBD sing 254 n n 
O2B HO2A NBD sing 255 n n 
C1B N9A NBD sing 256 n n 
C1B H1B NBD sing 257 n n 
N9A C8A NBD sing 258 n y 
N9A C4A NBD sing 259 n y 
C8A N7A NBD doub 260 n y 
C8A H8A NBD sing 261 n n 
N7A C5A NBD sing 262 n y 
C5A C6A NBD sing 263 n y 
C5A C4A NBD doub 264 n y 
C6A N6A NBD sing 265 n n 
C6A N1A NBD doub 266 n y 
N6A CB1 NBD sing 267 n n 
N6A H6A NBD sing 268 n n 
N1A C2A NBD sing 269 n y 
C2A N3A NBD doub 270 n y 
C2A H2A NBD sing 271 n n 
N3A C4A NBD sing 272 n y 
O3 PN NBD sing 273 n n 
PN O13 NBD doub 274 n n 
PN O14 NBD sing 275 n n 
PN O5D NBD sing 276 n n 
O5D C5D NBD sing 277 n n 
C5D C4D NBD sing 278 n n 
C5D H51N NBD sing 279 n n 
C5D H52N NBD sing 280 n n 
C4D O4D NBD sing 281 n n 
C4D C3D NBD sing 282 n n 
C4D H4D NBD sing 283 n n 
O4D C1D NBD sing 284 n n 
C3D O3D NBD sing 285 n n 
C3D C2D NBD sing 286 n n 
C3D H3D NBD sing 287 n n 
O3D HO3N NBD sing 288 n n 
C2D O2D NBD sing 289 n n 
C2D C1D NBD sing 290 n n 
C2D H2D NBD sing 291 n n 
O2D HO2N NBD sing 292 n n 
C1D N1N NBD sing 293 n n 
C1D H1D NBD sing 294 n n 
N1N C2N NBD sing 295 n y 
N1N C6N NBD doub 296 n y 
C2N C3N NBD doub 297 n y 
C2N H2N NBD sing 298 n n 
C3N C7N NBD sing 299 n n 
C3N C4N NBD sing 300 n y 
C7N O7N NBD doub 301 n n 
C7N N7N NBD sing 302 n n 
N7N H71N NBD sing 303 n n 
N7N H72N NBD sing 304 n n 
C4N C5N NBD doub 305 n y 
C4N H4N NBD sing 306 n n 
C5N C6N NBD sing 307 n y 
C5N H5N NBD sing 308 n n 
C6N H6N NBD sing 309 n n 
CB1 CB2 NBD sing 310 n n 
CB1 HB11 NBD sing 311 n n 
CB1 HB12 NBD sing 312 n n 
CB2 CB3 NBD doub 313 n y 
CB2 CB7 NBD sing 314 n y 
CB3 CB4 NBD sing 315 n y 
CB3 HB3 NBD sing 316 n n 
CB7 CB6 NBD doub 317 n y 
CB7 HB7 NBD sing 318 n n 
CB4 CB5 NBD doub 319 n y 
CB4 HB4 NBD sing 320 n n 
CB6 CB5 NBD sing 321 n y 
CB6 HB6 NBD sing 322 n n 
CB5 HB5 NBD sing 323 n n 
#
_atom_sites.entry_id                     1GYQ 
_atom_sites.fract_transf_matrix[1][1]    0.010274 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007948 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007257 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NBD A 1 361 361 NBD NBD . 
F 2 NBD B 1 361 361 NBD NBD . 
G 2 NBD C 1 361 361 NBD NBD . 
H 2 NBD D 1 361 361 NBD NBD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NBD . . . E 2 9.827 67.978 7.746 1 0 ? PA NBD 361 A 1 
HETATM 2 O O11 NBD . . . E 2 9.894 66.619 7.109 1 0 ? O11 NBD 361 A 1 
HETATM 3 O O12 NBD . . . E 2 8.556 68.374 8.46 1 0 ? O12 NBD 361 A 1 
HETATM 4 O O5B NBD . . . E 2 10.147 69.121 6.656 1 0 ? O5B NBD 361 A 1 
HETATM 5 C C5B NBD . . . E 2 10.812 68.834 5.411 1 0 ? C5B NBD 361 A 1 
HETATM 6 C C4B NBD . . . E 2 9.965 69.431 4.306 1 0 ? C4B NBD 361 A 1 
HETATM 7 O O4B NBD . . . E 2 10.704 69.444 3.074 1 0 ? O4B NBD 361 A 1 
HETATM 8 C C3B NBD . . . E 2 8.699 68.621 4.08 1 0 ? C3B NBD 361 A 1 
HETATM 9 O O3B NBD . . . E 2 7.556 69.475 4.091 1 0 ? O3B NBD 361 A 1 
HETATM 10 C C2B NBD . . . E 2 8.935 67.939 2.734 1 0 ? C2B NBD 361 A 1 
HETATM 11 O O2B NBD . . . E 2 7.75 67.72 1.975 1 0 ? O2B NBD 361 A 1 
HETATM 12 C C1B NBD . . . E 2 9.818 68.951 2.06 1 0 ? C1B NBD 361 A 1 
HETATM 13 N N9A NBD . . . E 2 10.565 68.548 0.897 1 0 ? N9A NBD 361 A 1 
HETATM 14 C C8A NBD . . . E 2 11.024 67.312 0.573 1 0 ? C8A NBD 361 A 1 
HETATM 15 N N7A NBD . . . E 2 11.734 67.35 -0.572 1 0 ? N7A NBD 361 A 1 
HETATM 16 C C5A NBD . . . E 2 11.73 68.627 -0.973 1 0 ? C5A NBD 361 A 1 
HETATM 17 C C6A NBD . . . E 2 12.309 69.301 -2.079 1 0 ? C6A NBD 361 A 1 
HETATM 18 N N6A NBD . . . E 2 13.07 68.752 -3.057 1 0 ? N6A NBD 361 A 1 
HETATM 19 N N1A NBD . . . E 2 12.1 70.651 -2.175 1 0 ? N1A NBD 361 A 1 
HETATM 20 C C2A NBD . . . E 2 11.375 71.385 -1.277 1 0 ? C2A NBD 361 A 1 
HETATM 21 N N3A NBD . . . E 2 10.827 70.73 -0.214 1 0 ? N3A NBD 361 A 1 
HETATM 22 C C4A NBD . . . E 2 10.998 69.385 -0.06 1 0 ? C4A NBD 361 A 1 
HETATM 23 O O3 NBD . . . E 2 11.142 68.128 8.631 1 0 ? O3 NBD 361 A 1 
HETATM 24 P PN NBD . . . E 2 11.704 69.244 9.618 1 0 ? PN NBD 361 A 1 
HETATM 25 O O13 NBD . . . E 2 11.574 68.691 11.013 1 0 ? O13 NBD 361 A 1 
HETATM 26 O O14 NBD . . . E 2 11.068 70.542 9.228 1 0 ? O14 NBD 361 A 1 
HETATM 27 O O5D NBD . . . E 2 13.269 69.303 9.282 1 0 ? O5D NBD 361 A 1 
HETATM 28 C C5D NBD . . . E 2 13.782 69.988 8.135 1 0 ? C5D NBD 361 A 1 
HETATM 29 C C4D NBD . . . E 2 15.257 70.284 8.354 1 0 ? C4D NBD 361 A 1 
HETATM 30 O O4D NBD . . . E 2 15.351 71.17 9.481 1 0 ? O4D NBD 361 A 1 
HETATM 31 C C3D NBD . . . E 2 16.09 69.057 8.692 1 0 ? C3D NBD 361 A 1 
HETATM 32 O O3D NBD . . . E 2 17.405 69.191 8.142 1 0 ? O3D NBD 361 A 1 
HETATM 33 C C2D NBD . . . E 2 16.132 69.046 10.21 1 0 ? C2D NBD 361 A 1 
HETATM 34 O O2D NBD . . . E 2 17.365 68.496 10.68 1 0 ? O2D NBD 361 A 1 
HETATM 35 C C1D NBD . . . E 2 16.056 70.519 10.555 1 0 ? C1D NBD 361 A 1 
HETATM 36 N N1N NBD . . . E 2 15.532 70.83 11.916 1 0 ? N1N NBD 361 A 1 
HETATM 37 C C2N NBD . . . E 2 14.381 70.224 12.48 1 0 ? C2N NBD 361 A 1 
HETATM 38 C C3N NBD . . . E 2 14.049 70.487 13.816 1 0 ? C3N NBD 361 A 1 
HETATM 39 C C7N NBD . . . E 2 12.85 69.866 14.542 1 0 ? C7N NBD 361 A 1 
HETATM 40 O O7N NBD . . . E 2 12.89 69.755 15.766 1 0 ? O7N NBD 361 A 1 
HETATM 41 N N7N NBD . . . E 2 11.809 69.469 13.817 1 0 ? N7N NBD 361 A 1 
HETATM 42 C C4N NBD . . . E 2 14.844 71.357 14.557 1 0 ? C4N NBD 361 A 1 
HETATM 43 C C5N NBD . . . E 2 15.973 71.962 14.007 1 0 ? C5N NBD 361 A 1 
HETATM 44 C C6N NBD . . . E 2 16.317 71.699 12.685 1 0 ? C6N NBD 361 A 1 
HETATM 45 C CB1 NBD . . . E 2 13.325 67.362 -3.27 1 0 ? CB1 NBD 361 A 1 
HETATM 46 C CB2 NBD . . . E 2 12.314 66.618 -4.046 1 0 ? CB2 NBD 361 A 1 
HETATM 47 C CB3 NBD . . . E 2 11.615 67.209 -5.157 1 0 ? CB3 NBD 361 A 1 
HETATM 48 C CB7 NBD . . . E 2 12.053 65.268 -3.634 1 0 ? CB7 NBD 361 A 1 
HETATM 49 C CB4 NBD . . . E 2 10.645 66.438 -5.869 1 0 ? CB4 NBD 361 A 1 
HETATM 50 C CB6 NBD . . . E 2 11.085 64.49 -4.341 1 0 ? CB6 NBD 361 A 1 
HETATM 51 C CB5 NBD . . . E 2 10.4 65.091 -5.447 1 0 ? CB5 NBD 361 A 1 
#
_model_server_stats.io_time_ms              65 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           51 
#