data_1GZQ # _model_server_result.job_id qJF2kd3ABYRJEbMNdvEDxQ _model_server_result.datetime_utc '2024-11-01 17:20:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1gzq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1284}' # _entry.id 1GZQ # _exptl.entry_id 1GZQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 170.335 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1GZQ _cell.length_a 87.881 _cell.length_b 176.998 _cell.length_c 75.277 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GZQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 105 A CYS 102 1_555 A SG CYS 169 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf2 A SG CYS 134 A CYS 131 1_555 A SG CYS 148 A CYS 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 209 A CYS 206 1_555 A SG CYS 264 A CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf4 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? # _chem_comp.formula 'C12 H26' _chem_comp.formula_weight 170.335 _chem_comp.id D12 _chem_comp.mon_nstd_flag . _chem_comp.name DODECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 D12 sing 83 n n C1 H11 D12 sing 84 n n C1 H12 D12 sing 85 n n C1 H13 D12 sing 86 n n C2 C3 D12 sing 87 n n C2 H21 D12 sing 88 n n C2 H22 D12 sing 89 n n C3 C4 D12 sing 90 n n C3 H31 D12 sing 91 n n C3 H32 D12 sing 92 n n C4 C5 D12 sing 93 n n C4 H41 D12 sing 94 n n C4 H42 D12 sing 95 n n C5 C6 D12 sing 96 n n C5 H51 D12 sing 97 n n C5 H52 D12 sing 98 n n C6 C7 D12 sing 99 n n C6 H61 D12 sing 100 n n C6 H62 D12 sing 101 n n C7 C8 D12 sing 102 n n C7 H71 D12 sing 103 n n C7 H72 D12 sing 104 n n C8 C9 D12 sing 105 n n C8 H81 D12 sing 106 n n C8 H82 D12 sing 107 n n C9 C10 D12 sing 108 n n C9 H91 D12 sing 109 n n C9 H92 D12 sing 110 n n C10 C11 D12 sing 111 n n C10 H101 D12 sing 112 n n C10 H102 D12 sing 113 n n C11 C12 D12 sing 114 n n C11 H111 D12 sing 115 n n C11 H112 D12 sing 116 n n C12 H121 D12 sing 117 n n C12 H122 D12 sing 118 n n C12 H123 D12 sing 119 n n # _atom_sites.entry_id 1GZQ _atom_sites.fract_transf_matrix[1][1] 0.011379 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00565 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013284 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PII A 1 1280 1280 PII PII . D 4 NO3 A 1 1281 1281 NO3 NO3 . E 4 NO3 A 1 1282 1282 NO3 NO3 . F 4 NO3 A 1 1283 1283 NO3 NO3 . G 5 D12 A 1 1284 1284 D12 D12 . H 6 TWT A 1 1285 1285 TWT TWT . I 7 HOH A 1 2001 2001 HOH HOH . I 7 HOH A 2 2002 2002 HOH HOH . I 7 HOH A 3 2003 2003 HOH HOH . I 7 HOH A 4 2004 2004 HOH HOH . I 7 HOH A 5 2005 2005 HOH HOH . I 7 HOH A 6 2006 2006 HOH HOH . I 7 HOH A 7 2007 2007 HOH HOH . I 7 HOH A 8 2008 2008 HOH HOH . I 7 HOH A 9 2009 2009 HOH HOH . I 7 HOH A 10 2010 2010 HOH HOH . I 7 HOH A 11 2011 2011 HOH HOH . I 7 HOH A 12 2012 2012 HOH HOH . I 7 HOH A 13 2013 2013 HOH HOH . I 7 HOH A 14 2014 2014 HOH HOH . I 7 HOH A 15 2015 2015 HOH HOH . I 7 HOH A 16 2016 2016 HOH HOH . I 7 HOH A 17 2017 2017 HOH HOH . I 7 HOH A 18 2018 2018 HOH HOH . I 7 HOH A 19 2019 2019 HOH HOH . I 7 HOH A 20 2020 2020 HOH HOH . I 7 HOH A 21 2021 2021 HOH HOH . I 7 HOH A 22 2022 2022 HOH HOH . I 7 HOH A 23 2023 2023 HOH HOH . I 7 HOH A 24 2024 2024 HOH HOH . I 7 HOH A 25 2025 2025 HOH HOH . I 7 HOH A 26 2026 2026 HOH HOH . I 7 HOH A 27 2027 2027 HOH HOH . I 7 HOH A 28 2028 2028 HOH HOH . I 7 HOH A 29 2029 2029 HOH HOH . I 7 HOH A 30 2030 2030 HOH HOH . I 7 HOH A 31 2031 2031 HOH HOH . I 7 HOH A 32 2032 2032 HOH HOH . I 7 HOH A 33 2033 2033 HOH HOH . I 7 HOH A 34 2034 2034 HOH HOH . I 7 HOH A 35 2035 2035 HOH HOH . I 7 HOH A 36 2036 2036 HOH HOH . I 7 HOH A 37 2037 2037 HOH HOH . I 7 HOH A 38 2038 2038 HOH HOH . I 7 HOH A 39 2039 2039 HOH HOH . I 7 HOH A 40 2040 2040 HOH HOH . I 7 HOH A 41 2041 2041 HOH HOH . I 7 HOH A 42 2042 2042 HOH HOH . I 7 HOH A 43 2043 2043 HOH HOH . I 7 HOH A 44 2044 2044 HOH HOH . I 7 HOH A 45 2045 2045 HOH HOH . I 7 HOH A 46 2046 2046 HOH HOH . I 7 HOH A 47 2047 2047 HOH HOH . I 7 HOH A 48 2048 2048 HOH HOH . I 7 HOH A 49 2049 2049 HOH HOH . I 7 HOH A 50 2050 2050 HOH HOH . I 7 HOH A 51 2051 2051 HOH HOH . I 7 HOH A 52 2052 2052 HOH HOH . I 7 HOH A 53 2053 2053 HOH HOH . I 7 HOH A 54 2054 2054 HOH HOH . I 7 HOH A 55 2055 2055 HOH HOH . I 7 HOH A 56 2056 2056 HOH HOH . I 7 HOH A 57 2057 2057 HOH HOH . I 7 HOH A 58 2058 2058 HOH HOH . I 7 HOH A 59 2059 2059 HOH HOH . I 7 HOH A 60 2060 2060 HOH HOH . I 7 HOH A 61 2061 2061 HOH HOH . I 7 HOH A 62 2062 2062 HOH HOH . I 7 HOH A 63 2063 2063 HOH HOH . I 7 HOH A 64 2064 2064 HOH HOH . I 7 HOH A 65 2065 2065 HOH HOH . I 7 HOH A 66 2066 2066 HOH HOH . I 7 HOH A 67 2067 2067 HOH HOH . I 7 HOH A 68 2068 2068 HOH HOH . I 7 HOH A 69 2069 2069 HOH HOH . I 7 HOH A 70 2070 2070 HOH HOH . I 7 HOH A 71 2071 2071 HOH HOH . I 7 HOH A 72 2072 2072 HOH HOH . I 7 HOH A 73 2073 2073 HOH HOH . I 7 HOH A 74 2074 2074 HOH HOH . I 7 HOH A 75 2075 2075 HOH HOH . I 7 HOH A 76 2076 2076 HOH HOH . I 7 HOH A 77 2077 2077 HOH HOH . I 7 HOH A 78 2078 2078 HOH HOH . I 7 HOH A 79 2079 2079 HOH HOH . I 7 HOH A 80 2080 2080 HOH HOH . I 7 HOH A 81 2081 2081 HOH HOH . I 7 HOH A 82 2082 2082 HOH HOH . I 7 HOH A 83 2083 2083 HOH HOH . I 7 HOH A 84 2084 2084 HOH HOH . I 7 HOH A 85 2085 2085 HOH HOH . I 7 HOH A 86 2086 2086 HOH HOH . I 7 HOH A 87 2087 2087 HOH HOH . I 7 HOH A 88 2088 2088 HOH HOH . I 7 HOH A 89 2089 2089 HOH HOH . I 7 HOH A 90 2090 2090 HOH HOH . I 7 HOH A 91 2091 2091 HOH HOH . I 7 HOH A 92 2092 2092 HOH HOH . I 7 HOH A 93 2093 2093 HOH HOH . I 7 HOH A 94 2094 2094 HOH HOH . I 7 HOH A 95 2095 2095 HOH HOH . I 7 HOH A 96 2096 2096 HOH HOH . I 7 HOH A 97 2097 2097 HOH HOH . I 7 HOH A 98 2098 2098 HOH HOH . I 7 HOH A 99 2099 2099 HOH HOH . I 7 HOH A 100 2100 2100 HOH HOH . I 7 HOH A 101 2101 2101 HOH HOH . I 7 HOH A 102 2102 2102 HOH HOH . I 7 HOH A 103 2103 2103 HOH HOH . I 7 HOH A 104 2104 2104 HOH HOH . I 7 HOH A 105 2105 2105 HOH HOH . I 7 HOH A 106 2106 2106 HOH HOH . I 7 HOH A 107 2107 2107 HOH HOH . I 7 HOH A 108 2108 2108 HOH HOH . I 7 HOH A 109 2109 2109 HOH HOH . I 7 HOH A 110 2110 2110 HOH HOH . I 7 HOH A 111 2111 2111 HOH HOH . I 7 HOH A 112 2112 2112 HOH HOH . I 7 HOH A 113 2113 2113 HOH HOH . I 7 HOH A 114 2114 2114 HOH HOH . I 7 HOH A 115 2115 2115 HOH HOH . I 7 HOH A 116 2116 2116 HOH HOH . I 7 HOH A 117 2117 2117 HOH HOH . I 7 HOH A 118 2118 2118 HOH HOH . I 7 HOH A 119 2119 2119 HOH HOH . I 7 HOH A 120 2120 2120 HOH HOH . I 7 HOH A 121 2121 2121 HOH HOH . I 7 HOH A 122 2122 2122 HOH HOH . I 7 HOH A 123 2123 2123 HOH HOH . I 7 HOH A 124 2124 2124 HOH HOH . I 7 HOH A 125 2125 2125 HOH HOH . I 7 HOH A 126 2126 2126 HOH HOH . I 7 HOH A 127 2127 2127 HOH HOH . I 7 HOH A 128 2128 2128 HOH HOH . I 7 HOH A 129 2129 2129 HOH HOH . I 7 HOH A 130 2130 2130 HOH HOH . I 7 HOH A 131 2131 2131 HOH HOH . I 7 HOH A 132 2132 2132 HOH HOH . I 7 HOH A 133 2133 2133 HOH HOH . I 7 HOH A 134 2134 2134 HOH HOH . I 7 HOH A 135 2135 2135 HOH HOH . I 7 HOH A 136 2136 2136 HOH HOH . I 7 HOH A 137 2137 2137 HOH HOH . I 7 HOH A 138 2138 2138 HOH HOH . I 7 HOH A 139 2139 2139 HOH HOH . J 7 HOH B 1 2001 2001 HOH HOH . J 7 HOH B 2 2002 2002 HOH HOH . J 7 HOH B 3 2003 2003 HOH HOH . J 7 HOH B 4 2004 2004 HOH HOH . J 7 HOH B 5 2005 2005 HOH HOH . J 7 HOH B 6 2006 2006 HOH HOH . J 7 HOH B 7 2007 2007 HOH HOH . J 7 HOH B 8 2008 2008 HOH HOH . J 7 HOH B 9 2009 2009 HOH HOH . J 7 HOH B 10 2010 2010 HOH HOH . J 7 HOH B 11 2011 2011 HOH HOH . J 7 HOH B 12 2012 2012 HOH HOH . J 7 HOH B 13 2013 2013 HOH HOH . J 7 HOH B 14 2014 2014 HOH HOH . J 7 HOH B 15 2015 2015 HOH HOH . J 7 HOH B 16 2016 2016 HOH HOH . J 7 HOH B 17 2017 2017 HOH HOH . J 7 HOH B 18 2018 2018 HOH HOH . J 7 HOH B 19 2019 2019 HOH HOH . J 7 HOH B 20 2020 2020 HOH HOH . J 7 HOH B 21 2021 2021 HOH HOH . J 7 HOH B 22 2022 2022 HOH HOH . J 7 HOH B 23 2023 2023 HOH HOH . J 7 HOH B 24 2024 2024 HOH HOH . J 7 HOH B 25 2025 2025 HOH HOH . J 7 HOH B 26 2026 2026 HOH HOH . J 7 HOH B 27 2027 2027 HOH HOH . J 7 HOH B 28 2028 2028 HOH HOH . J 7 HOH B 29 2029 2029 HOH HOH . J 7 HOH B 30 2030 2030 HOH HOH . J 7 HOH B 31 2031 2031 HOH HOH . J 7 HOH B 32 2032 2032 HOH HOH . J 7 HOH B 33 2033 2033 HOH HOH . J 7 HOH B 34 2034 2034 HOH HOH . J 7 HOH B 35 2035 2035 HOH HOH . J 7 HOH B 36 2036 2036 HOH HOH . J 7 HOH B 37 2037 2037 HOH HOH . J 7 HOH B 38 2038 2038 HOH HOH . J 7 HOH B 39 2039 2039 HOH HOH . J 7 HOH B 40 2040 2040 HOH HOH . J 7 HOH B 41 2041 2041 HOH HOH . J 7 HOH B 42 2042 2042 HOH HOH . J 7 HOH B 43 2043 2043 HOH HOH . J 7 HOH B 44 2044 2044 HOH HOH . J 7 HOH B 45 2045 2045 HOH HOH . J 7 HOH B 46 2046 2046 HOH HOH . J 7 HOH B 47 2047 2047 HOH HOH . J 7 HOH B 48 2048 2048 HOH HOH . J 7 HOH B 49 2049 2049 HOH HOH . J 7 HOH B 50 2050 2050 HOH HOH . J 7 HOH B 51 2051 2051 HOH HOH . J 7 HOH B 52 2052 2052 HOH HOH . J 7 HOH B 53 2053 2053 HOH HOH . J 7 HOH B 54 2054 2054 HOH HOH . J 7 HOH B 55 2055 2055 HOH HOH . J 7 HOH B 56 2056 2056 HOH HOH . J 7 HOH B 57 2057 2057 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 D12 . . . G 5 114.328 7.834 -0.02 1 83.69 ? C1 D12 1284 A 1 HETATM 2 C C2 D12 . . . G 5 114.229 7.614 1.482 1 86.14 ? C2 D12 1284 A 1 HETATM 3 C C3 D12 . . . G 5 113.135 8.369 2.229 1 83.27 ? C3 D12 1284 A 1 HETATM 4 C C4 D12 . . . G 5 113.514 9.052 3.538 1 79.88 ? C4 D12 1284 A 1 HETATM 5 C C5 D12 . . . G 5 112.908 8.49 4.814 1 77.88 ? C5 D12 1284 A 1 HETATM 6 C C6 D12 . . . G 5 111.67 9.189 5.365 1 74.59 ? C6 D12 1284 A 1 HETATM 7 C C7 D12 . . . G 5 111.149 8.725 6.727 1 70.75 ? C7 D12 1284 A 1 HETATM 8 C C8 D12 . . . G 5 109.682 9.002 7.064 1 66.49 ? C8 D12 1284 A 1 HETATM 9 C C9 D12 . . . G 5 109.093 8.279 8.27 1 64.44 ? C9 D12 1284 A 1 HETATM 10 C C10 D12 . . . G 5 107.595 8.424 8.513 1 66.24 ? C10 D12 1284 A 1 HETATM 11 C C11 D12 . . . G 5 107.075 8.209 9.933 1 63.66 ? C11 D12 1284 A 1 HETATM 12 C C12 D12 . . . G 5 106.059 9.222 10.456 1 65.85 ? C12 D12 1284 A 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 12 #