data_1GZV # _model_server_result.job_id KYX-P6HOZqYzYTmoZlc_8g _model_server_result.datetime_utc '2025-01-16 13:56:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1gzv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":600}' # _entry.id 1GZV # _exptl.entry_id 1GZV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 246.109 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-PHOSPHOARABINONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1GZV _cell.length_a 95.6 _cell.length_b 95.6 _cell.length_c 138.7 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1GZV _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 95.6 95.6 69.35 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG1 _struct_conn.ptnr1_label_comp_id THR _struct_conn.ptnr1_label_seq_id 214 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id THR _struct_conn.ptnr1_auth_seq_id 214 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id O2P _struct_conn.ptnr2_label_comp_id PA5 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PA5 _struct_conn.ptnr2_auth_seq_id 600 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.955 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C5 H11 O9 P' _chem_comp.formula_weight 246.109 _chem_comp.id PA5 _chem_comp.mon_nstd_flag . _chem_comp.name '5-PHOSPHOARABINONIC ACID' _chem_comp.type saccharide _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1GZV _atom_sites.fract_transf_matrix[1][1] 0.01046 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01046 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00721 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id PA5 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 600 _pdbx_nonpoly_scheme.auth_seq_num 600 _pdbx_nonpoly_scheme.pdb_mon_id PA5 _pdbx_nonpoly_scheme.auth_mon_id PA5 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1A PA5 . . . B 2 45.836 30.764 46.618 1 40.31 ? O1A PA5 600 A 1 HETATM 2 C C1 PA5 . . . B 2 45.652 31.104 47.777 1 39.95 ? C1 PA5 600 A 1 HETATM 3 O O1 PA5 . . . B 2 45.283 30.286 48.585 1 42.03 ? O1 PA5 600 A 1 HETATM 4 C C2 PA5 . . . B 2 45.844 32.505 48.236 1 38.8 ? C2 PA5 600 A 1 HETATM 5 O O2 PA5 . . . B 2 46.192 33.227 47.09 1 39.6 ? O2 PA5 600 A 1 HETATM 6 C C3 PA5 . . . B 2 44.495 33.069 48.628 1 38.25 ? C3 PA5 600 A 1 HETATM 7 O O3 PA5 . . . B 2 43.862 33.405 47.405 1 38.06 ? O3 PA5 600 A 1 HETATM 8 C C4 PA5 . . . B 2 44.598 34.355 49.442 1 37.02 ? C4 PA5 600 A 1 HETATM 9 O O4 PA5 . . . B 2 45.464 34.168 50.549 1 34.36 ? O4 PA5 600 A 1 HETATM 10 C C5 PA5 . . . B 2 43.238 34.827 49.957 1 36.97 ? C5 PA5 600 A 1 HETATM 11 O O5 PA5 . . . B 2 42.681 33.848 50.852 1 36.27 ? O5 PA5 600 A 1 HETATM 12 P P PA5 . . . B 2 41.192 34.094 51.423 1 34.26 ? P PA5 600 A 1 HETATM 13 O O1P PA5 . . . B 2 40.998 33.105 52.516 1 36.65 ? O1P PA5 600 A 1 HETATM 14 O O2P PA5 . . . B 2 41.171 35.507 51.968 1 32.33 ? O2P PA5 600 A 1 HETATM 15 O O3P PA5 . . . B 2 40.345 33.696 50.239 1 34.09 ? O3P PA5 600 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 15 #