data_1H04
#
_model_server_result.job_id            6bh_4At8Y0tMlSahy-KRBg 
_model_server_result.datetime_utc      '2024-10-13 07:18:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1h04 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1129}' 
#
_entry.id    1H04 
#
_exptl.entry_id    1H04 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          111.5 
_cell.angle_gamma         90 
_cell.entry_id            1H04 
_cell.length_a            125.7 
_cell.length_b            20.4 
_cell.length_c            52.7 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1H04 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 3 P CYS 7 1_555 A SG CYS 44 P CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf2 A SG CYS 30 P CYS 34 1_555 A SG CYS 60 P CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 A SG CYS 65 P CYS 69 1_555 A SG CYS 107 P CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf4 A SG CYS 93 P CYS 97 1_555 A SG CYS 123 P CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1H04 
_atom_sites.fract_transf_matrix[1][1]    0.007955 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003134 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.04902 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020394 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NI P 1 1129 1129 NI NI . 
C 3 HOH P 1 2001 2001 HOH HOH . 
C 3 HOH P 2 2002 2002 HOH HOH . 
C 3 HOH P 3 2003 2003 HOH HOH . 
C 3 HOH P 4 2004 2004 HOH HOH . 
C 3 HOH P 5 2005 2005 HOH HOH . 
C 3 HOH P 6 2006 2006 HOH HOH . 
C 3 HOH P 7 2007 2007 HOH HOH . 
C 3 HOH P 8 2008 2008 HOH HOH . 
C 3 HOH P 9 2009 2009 HOH HOH . 
C 3 HOH P 10 2010 2010 HOH HOH . 
C 3 HOH P 11 2011 2011 HOH HOH . 
C 3 HOH P 12 2012 2012 HOH HOH . 
C 3 HOH P 13 2013 2013 HOH HOH . 
C 3 HOH P 14 2014 2014 HOH HOH . 
C 3 HOH P 15 2015 2015 HOH HOH . 
C 3 HOH P 16 2016 2016 HOH HOH . 
C 3 HOH P 17 2017 2017 HOH HOH . 
C 3 HOH P 18 2018 2018 HOH HOH . 
C 3 HOH P 19 2019 2019 HOH HOH . 
C 3 HOH P 20 2020 2020 HOH HOH . 
C 3 HOH P 21 2021 2021 HOH HOH . 
C 3 HOH P 22 2022 2022 HOH HOH . 
C 3 HOH P 23 2023 2023 HOH HOH . 
C 3 HOH P 24 2024 2024 HOH HOH . 
C 3 HOH P 25 2025 2025 HOH HOH . 
C 3 HOH P 26 2026 2026 HOH HOH . 
C 3 HOH P 27 2027 2027 HOH HOH . 
C 3 HOH P 28 2028 2028 HOH HOH . 
C 3 HOH P 29 2029 2029 HOH HOH . 
C 3 HOH P 30 2030 2030 HOH HOH . 
C 3 HOH P 31 2031 2031 HOH HOH . 
C 3 HOH P 32 2032 2032 HOH HOH . 
C 3 HOH P 33 2033 2033 HOH HOH . 
C 3 HOH P 34 2034 2034 HOH HOH . 
C 3 HOH P 35 2035 2035 HOH HOH . 
C 3 HOH P 36 2036 2036 HOH HOH . 
C 3 HOH P 37 2037 2037 HOH HOH . 
C 3 HOH P 38 2038 2038 HOH HOH . 
C 3 HOH P 39 2039 2039 HOH HOH . 
C 3 HOH P 40 2040 2040 HOH HOH . 
C 3 HOH P 41 2041 2041 HOH HOH . 
C 3 HOH P 42 2042 2042 HOH HOH . 
C 3 HOH P 43 2043 2043 HOH HOH . 
C 3 HOH P 44 2044 2044 HOH HOH . 
C 3 HOH P 45 2045 2045 HOH HOH . 
C 3 HOH P 46 2046 2046 HOH HOH . 
C 3 HOH P 47 2047 2047 HOH HOH . 
C 3 HOH P 48 2048 2048 HOH HOH . 
C 3 HOH P 49 2049 2049 HOH HOH . 
C 3 HOH P 50 2050 2050 HOH HOH . 
C 3 HOH P 51 2051 2051 HOH HOH . 
C 3 HOH P 52 2052 2052 HOH HOH . 
C 3 HOH P 53 2053 2053 HOH HOH . 
C 3 HOH P 54 2054 2054 HOH HOH . 
C 3 HOH P 55 2055 2055 HOH HOH . 
C 3 HOH P 56 2056 2056 HOH HOH . 
C 3 HOH P 57 2057 2057 HOH HOH . 
C 3 HOH P 58 2058 2058 HOH HOH . 
C 3 HOH P 59 2059 2059 HOH HOH . 
C 3 HOH P 60 2060 2060 HOH HOH . 
C 3 HOH P 61 2061 2061 HOH HOH . 
C 3 HOH P 62 2062 2062 HOH HOH . 
C 3 HOH P 63 2063 2063 HOH HOH . 
C 3 HOH P 64 2064 2064 HOH HOH . 
C 3 HOH P 65 2065 2065 HOH HOH . 
C 3 HOH P 66 2066 2066 HOH HOH . 
C 3 HOH P 67 2067 2067 HOH HOH . 
C 3 HOH P 68 2068 2068 HOH HOH . 
C 3 HOH P 69 2069 2069 HOH HOH . 
C 3 HOH P 70 2070 2070 HOH HOH . 
C 3 HOH P 71 2071 2071 HOH HOH . 
C 3 HOH P 72 2072 2072 HOH HOH . 
C 3 HOH P 73 2073 2073 HOH HOH . 
C 3 HOH P 74 2074 2074 HOH HOH . 
C 3 HOH P 75 2075 2075 HOH HOH . 
C 3 HOH P 76 2076 2076 HOH HOH . 
C 3 HOH P 77 2077 2077 HOH HOH . 
C 3 HOH P 78 2078 2078 HOH HOH . 
C 3 HOH P 79 2079 2079 HOH HOH . 
C 3 HOH P 80 2080 2080 HOH HOH . 
C 3 HOH P 81 2081 2081 HOH HOH . 
C 3 HOH P 82 2082 2082 HOH HOH . 
C 3 HOH P 83 2083 2083 HOH HOH . 
C 3 HOH P 84 2084 2084 HOH HOH . 
C 3 HOH P 85 2085 2085 HOH HOH . 
C 3 HOH P 86 2086 2086 HOH HOH . 
C 3 HOH P 87 2087 2087 HOH HOH . 
C 3 HOH P 88 2088 2088 HOH HOH . 
C 3 HOH P 89 2089 2089 HOH HOH . 
C 3 HOH P 90 2090 2090 HOH HOH . 
C 3 HOH P 91 2091 2091 HOH HOH . 
C 3 HOH P 92 2092 2092 HOH HOH . 
C 3 HOH P 93 2093 2093 HOH HOH . 
C 3 HOH P 94 2094 2094 HOH HOH . 
C 3 HOH P 95 2095 2095 HOH HOH . 
C 3 HOH P 96 2096 2096 HOH HOH . 
C 3 HOH P 97 2097 2097 HOH HOH . 
C 3 HOH P 98 2098 2098 HOH HOH . 
C 3 HOH P 99 2099 2099 HOH HOH . 
C 3 HOH P 100 2100 2100 HOH HOH . 
C 3 HOH P 101 2101 2101 HOH HOH . 
C 3 HOH P 102 2102 2102 HOH HOH . 
C 3 HOH P 103 2103 2103 HOH HOH . 
C 3 HOH P 104 2104 2104 HOH HOH . 
C 3 HOH P 105 2105 2105 HOH HOH . 
C 3 HOH P 106 2106 2106 HOH HOH . 
C 3 HOH P 107 2107 2107 HOH HOH . 
C 3 HOH P 108 2108 2108 HOH HOH . 
C 3 HOH P 109 2109 2109 HOH HOH . 
C 3 HOH P 110 2110 2110 HOH HOH . 
C 3 HOH P 111 2111 2111 HOH HOH . 
C 3 HOH P 112 2112 2112 HOH HOH . 
C 3 HOH P 113 2113 2113 HOH HOH . 
C 3 HOH P 114 2114 2114 HOH HOH . 
C 3 HOH P 115 2115 2115 HOH HOH . 
C 3 HOH P 116 2116 2116 HOH HOH . 
C 3 HOH P 117 2117 2117 HOH HOH . 
C 3 HOH P 118 2118 2118 HOH HOH . 
C 3 HOH P 119 2119 2119 HOH HOH . 
C 3 HOH P 120 2120 2120 HOH HOH . 
C 3 HOH P 121 2121 2121 HOH HOH . 
C 3 HOH P 122 2122 2122 HOH HOH . 
C 3 HOH P 123 2123 2123 HOH HOH . 
C 3 HOH P 124 2124 2124 HOH HOH . 
C 3 HOH P 125 2125 2125 HOH HOH . 
C 3 HOH P 126 2126 2126 HOH HOH . 
C 3 HOH P 127 2127 2127 HOH HOH . 
C 3 HOH P 128 2128 2128 HOH HOH . 
C 3 HOH P 129 2129 2129 HOH HOH . 
C 3 HOH P 130 2130 2130 HOH HOH . 
C 3 HOH P 131 2131 2131 HOH HOH . 
C 3 HOH P 132 2132 2132 HOH HOH . 
C 3 HOH P 133 2133 2133 HOH HOH . 
C 3 HOH P 134 2134 2134 HOH HOH . 
C 3 HOH P 135 2135 2135 HOH HOH . 
C 3 HOH P 136 2136 2136 HOH HOH . 
C 3 HOH P 137 2137 2137 HOH HOH . 
C 3 HOH P 138 2138 2138 HOH HOH . 
C 3 HOH P 139 2139 2139 HOH HOH . 
C 3 HOH P 140 2140 2140 HOH HOH . 
C 3 HOH P 141 2141 2141 HOH HOH . 
C 3 HOH P 142 2142 2142 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               11.196 
_atom_site.Cartn_y               7.793 
_atom_site.Cartn_z               29.598 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        44.64 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           1129 
_atom_site.auth_asym_id          P 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              49 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           258 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#