data_1H08 # _model_server_result.job_id 0xy25If7vwW5fREpdoXMUA _model_server_result.datetime_utc '2024-12-26 13:24:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1h08 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":299}' # _entry.id 1H08 # _exptl.entry_id 1H08 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 458.352 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R)-1-{4-[(4-ANILINO-5-BROMOPYRIMIDIN-2-YL)AMINO]PHENOXY}-3-(DIMETHYLAMINO)PROPAN-2-OL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1H08 _cell.length_a 53.218 _cell.length_b 71.9 _cell.length_c 72.013 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1H08 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id C _struct_conn.ptnr1_label_comp_id ACE _struct_conn.ptnr1_label_seq_id 1 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id ACE _struct_conn.ptnr1_auth_seq_id 0 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id N _struct_conn.ptnr2_label_comp_id MET _struct_conn.ptnr2_label_seq_id 2 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id MET _struct_conn.ptnr2_auth_seq_id 1 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.331 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H24 Br N5 O2' _chem_comp.formula_weight 458.352 _chem_comp.id BYP _chem_comp.mon_nstd_flag . _chem_comp.name (2R)-1-{4-[(4-ANILINO-5-BROMOPYRIMIDIN-2-YL)AMINO]PHENOXY}-3-(DIMETHYLAMINO)PROPAN-2-OL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C22 O21 BYP sing 131 n n C22 C23 BYP sing 132 n n C22 H221 BYP sing 133 n n C22 H222 BYP sing 134 n n N1 C2 BYP doub 135 n y N1 C6 BYP sing 136 n y C2 C3 BYP sing 137 n y C2 H2 BYP sing 138 n n C6 N5 BYP doub 139 n y C6 N14 BYP sing 140 n n C4 C3 BYP doub 141 n y C4 N5 BYP sing 142 n y C4 N7 BYP sing 143 n n C3 BR BYP sing 144 n n C11 C10 BYP doub 145 n y C11 C12 BYP sing 146 n y C11 H11 BYP sing 147 n n C10 C9 BYP sing 148 n y C10 H10 BYP sing 149 n n C9 C8 BYP doub 150 n y C9 H9 BYP sing 151 n n C8 C13 BYP sing 152 n y C8 N7 BYP sing 153 n n C12 C13 BYP doub 154 n y C12 H12 BYP sing 155 n n C17 C16 BYP doub 156 n y C17 C18 BYP sing 157 n y C17 H17 BYP sing 158 n n C16 C15 BYP sing 159 n y C16 H16 BYP sing 160 n n C13 H13 BYP sing 161 n n C15 C20 BYP doub 162 n y C15 N14 BYP sing 163 n n C18 C19 BYP doub 164 n y C18 O21 BYP sing 165 n n C19 C20 BYP sing 166 n y C19 H19 BYP sing 167 n n C20 H20 BYP sing 168 n n N7 H7 BYP sing 169 n n N14 H14 BYP sing 170 n n C23 C24 BYP sing 171 n n C23 O28 BYP sing 172 n n C23 H23 BYP sing 173 n n C24 N25 BYP sing 174 n n C24 H241 BYP sing 175 n n C24 H242 BYP sing 176 n n N25 C26 BYP sing 177 n n N25 C27 BYP sing 178 n n C26 H261 BYP sing 179 n n C26 H262 BYP sing 180 n n C26 H263 BYP sing 181 n n C27 H271 BYP sing 182 n n C27 H272 BYP sing 183 n n C27 H273 BYP sing 184 n n O28 H28 BYP sing 185 n n # _atom_sites.entry_id 1H08 _atom_sites.fract_transf_matrix[1][1] 0.018791 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013908 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013886 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BYP A 1 299 299 BYP BYP . C 3 BWP A 1 300 300 BWP BWP . D 4 GOL A 1 301 301 GOL GOL . E 5 HOH A 1 2001 2001 HOH HOH . E 5 HOH A 2 2002 2002 HOH HOH . E 5 HOH A 3 2003 2003 HOH HOH . E 5 HOH A 4 2004 2004 HOH HOH . E 5 HOH A 5 2005 2005 HOH HOH . E 5 HOH A 6 2006 2006 HOH HOH . E 5 HOH A 7 2007 2007 HOH HOH . E 5 HOH A 8 2008 2008 HOH HOH . E 5 HOH A 9 2009 2009 HOH HOH . E 5 HOH A 10 2010 2010 HOH HOH . E 5 HOH A 11 2011 2011 HOH HOH . E 5 HOH A 12 2012 2012 HOH HOH . E 5 HOH A 13 2013 2013 HOH HOH . E 5 HOH A 14 2014 2014 HOH HOH . E 5 HOH A 15 2015 2015 HOH HOH . E 5 HOH A 16 2016 2016 HOH HOH . E 5 HOH A 17 2017 2017 HOH HOH . E 5 HOH A 18 2018 2018 HOH HOH . E 5 HOH A 19 2019 2019 HOH HOH . E 5 HOH A 20 2020 2020 HOH HOH . E 5 HOH A 21 2021 2021 HOH HOH . E 5 HOH A 22 2022 2022 HOH HOH . E 5 HOH A 23 2023 2023 HOH HOH . E 5 HOH A 24 2024 2024 HOH HOH . E 5 HOH A 25 2025 2025 HOH HOH . E 5 HOH A 26 2026 2026 HOH HOH . E 5 HOH A 27 2027 2027 HOH HOH . E 5 HOH A 28 2028 2028 HOH HOH . E 5 HOH A 29 2029 2029 HOH HOH . E 5 HOH A 30 2030 2030 HOH HOH . E 5 HOH A 31 2031 2031 HOH HOH . E 5 HOH A 32 2032 2032 HOH HOH . E 5 HOH A 33 2033 2033 HOH HOH . E 5 HOH A 34 2034 2034 HOH HOH . E 5 HOH A 35 2035 2035 HOH HOH . E 5 HOH A 36 2036 2036 HOH HOH . E 5 HOH A 37 2037 2037 HOH HOH . E 5 HOH A 38 2038 2038 HOH HOH . E 5 HOH A 39 2039 2039 HOH HOH . E 5 HOH A 40 2040 2040 HOH HOH . E 5 HOH A 41 2041 2041 HOH HOH . E 5 HOH A 42 2042 2042 HOH HOH . E 5 HOH A 43 2043 2043 HOH HOH . E 5 HOH A 44 2044 2044 HOH HOH . E 5 HOH A 45 2045 2045 HOH HOH . E 5 HOH A 46 2046 2046 HOH HOH . E 5 HOH A 47 2047 2047 HOH HOH . E 5 HOH A 48 2048 2048 HOH HOH . E 5 HOH A 49 2049 2049 HOH HOH . E 5 HOH A 50 2050 2050 HOH HOH . E 5 HOH A 51 2051 2051 HOH HOH . E 5 HOH A 52 2052 2052 HOH HOH . E 5 HOH A 53 2053 2053 HOH HOH . E 5 HOH A 54 2054 2054 HOH HOH . E 5 HOH A 55 2055 2055 HOH HOH . E 5 HOH A 56 2056 2056 HOH HOH . E 5 HOH A 57 2057 2057 HOH HOH . E 5 HOH A 58 2058 2058 HOH HOH . E 5 HOH A 59 2059 2059 HOH HOH . E 5 HOH A 60 2060 2060 HOH HOH . E 5 HOH A 61 2061 2061 HOH HOH . E 5 HOH A 62 2062 2062 HOH HOH . E 5 HOH A 63 2063 2063 HOH HOH . E 5 HOH A 64 2064 2064 HOH HOH . E 5 HOH A 65 2065 2065 HOH HOH . E 5 HOH A 66 2066 2066 HOH HOH . E 5 HOH A 67 2067 2067 HOH HOH . E 5 HOH A 68 2068 2068 HOH HOH . E 5 HOH A 69 2069 2069 HOH HOH . E 5 HOH A 70 2070 2070 HOH HOH . E 5 HOH A 71 2071 2071 HOH HOH . E 5 HOH A 72 2072 2072 HOH HOH . E 5 HOH A 73 2073 2073 HOH HOH . E 5 HOH A 74 2074 2074 HOH HOH . E 5 HOH A 75 2075 2075 HOH HOH . E 5 HOH A 76 2076 2076 HOH HOH . E 5 HOH A 77 2077 2077 HOH HOH . E 5 HOH A 78 2078 2078 HOH HOH . E 5 HOH A 79 2079 2079 HOH HOH . E 5 HOH A 80 2080 2080 HOH HOH . E 5 HOH A 81 2081 2081 HOH HOH . E 5 HOH A 82 2082 2082 HOH HOH . E 5 HOH A 83 2083 2083 HOH HOH . E 5 HOH A 84 2084 2084 HOH HOH . E 5 HOH A 85 2085 2085 HOH HOH . E 5 HOH A 86 2086 2086 HOH HOH . E 5 HOH A 87 2087 2087 HOH HOH . E 5 HOH A 88 2088 2088 HOH HOH . E 5 HOH A 89 2089 2089 HOH HOH . E 5 HOH A 90 2090 2090 HOH HOH . E 5 HOH A 91 2091 2091 HOH HOH . E 5 HOH A 92 2092 2092 HOH HOH . E 5 HOH A 93 2093 2093 HOH HOH . E 5 HOH A 94 2094 2094 HOH HOH . E 5 HOH A 95 2095 2095 HOH HOH . E 5 HOH A 96 2096 2096 HOH HOH . E 5 HOH A 97 2097 2097 HOH HOH . E 5 HOH A 98 2098 2098 HOH HOH . E 5 HOH A 99 2099 2099 HOH HOH . E 5 HOH A 100 2100 2100 HOH HOH . E 5 HOH A 101 2101 2101 HOH HOH . E 5 HOH A 102 2102 2102 HOH HOH . E 5 HOH A 103 2103 2103 HOH HOH . E 5 HOH A 104 2104 2104 HOH HOH . E 5 HOH A 105 2105 2105 HOH HOH . E 5 HOH A 106 2106 2106 HOH HOH . E 5 HOH A 107 2107 2107 HOH HOH . E 5 HOH A 108 2108 2108 HOH HOH . E 5 HOH A 109 2109 2109 HOH HOH . E 5 HOH A 110 2110 2110 HOH HOH . E 5 HOH A 111 2111 2111 HOH HOH . E 5 HOH A 112 2112 2112 HOH HOH . E 5 HOH A 113 2113 2113 HOH HOH . E 5 HOH A 114 2114 2114 HOH HOH . E 5 HOH A 115 2115 2115 HOH HOH . E 5 HOH A 116 2116 2116 HOH HOH . E 5 HOH A 117 2117 2117 HOH HOH . E 5 HOH A 118 2118 2118 HOH HOH . E 5 HOH A 119 2119 2119 HOH HOH . E 5 HOH A 120 2120 2120 HOH HOH . E 5 HOH A 121 2121 2121 HOH HOH . E 5 HOH A 122 2122 2122 HOH HOH . E 5 HOH A 123 2123 2123 HOH HOH . E 5 HOH A 124 2124 2124 HOH HOH . E 5 HOH A 125 2125 2125 HOH HOH . E 5 HOH A 126 2126 2126 HOH HOH . E 5 HOH A 127 2127 2127 HOH HOH . E 5 HOH A 128 2128 2128 HOH HOH . E 5 HOH A 129 2129 2129 HOH HOH . E 5 HOH A 130 2130 2130 HOH HOH . E 5 HOH A 131 2131 2131 HOH HOH . E 5 HOH A 132 2132 2132 HOH HOH . E 5 HOH A 133 2133 2133 HOH HOH . E 5 HOH A 134 2134 2134 HOH HOH . E 5 HOH A 135 2135 2135 HOH HOH . E 5 HOH A 136 2136 2136 HOH HOH . E 5 HOH A 137 2137 2137 HOH HOH . E 5 HOH A 138 2138 2138 HOH HOH . E 5 HOH A 139 2139 2139 HOH HOH . E 5 HOH A 140 2140 2140 HOH HOH . E 5 HOH A 141 2141 2141 HOH HOH . E 5 HOH A 142 2142 2142 HOH HOH . E 5 HOH A 143 2143 2143 HOH HOH . E 5 HOH A 144 2144 2144 HOH HOH . E 5 HOH A 145 2145 2145 HOH HOH . E 5 HOH A 146 2146 2146 HOH HOH . E 5 HOH A 147 2147 2147 HOH HOH . E 5 HOH A 148 2148 2148 HOH HOH . E 5 HOH A 149 2149 2149 HOH HOH . E 5 HOH A 150 2150 2150 HOH HOH . E 5 HOH A 151 2151 2151 HOH HOH . E 5 HOH A 152 2152 2152 HOH HOH . E 5 HOH A 153 2153 2153 HOH HOH . E 5 HOH A 154 2154 2154 HOH HOH . E 5 HOH A 155 2155 2155 HOH HOH . E 5 HOH A 156 2156 2156 HOH HOH . E 5 HOH A 157 2157 2157 HOH HOH . E 5 HOH A 158 2158 2158 HOH HOH . E 5 HOH A 159 2159 2159 HOH HOH . E 5 HOH A 160 2160 2160 HOH HOH . E 5 HOH A 161 2161 2161 HOH HOH . E 5 HOH A 162 2162 2162 HOH HOH . E 5 HOH A 163 2163 2163 HOH HOH . E 5 HOH A 164 2164 2164 HOH HOH . E 5 HOH A 165 2165 2165 HOH HOH . E 5 HOH A 166 2166 2166 HOH HOH . E 5 HOH A 167 2167 2167 HOH HOH . E 5 HOH A 168 2168 2168 HOH HOH . E 5 HOH A 169 2169 2169 HOH HOH . E 5 HOH A 170 2170 2170 HOH HOH . E 5 HOH A 171 2171 2171 HOH HOH . E 5 HOH A 172 2172 2172 HOH HOH . E 5 HOH A 173 2173 2173 HOH HOH . E 5 HOH A 174 2174 2174 HOH HOH . E 5 HOH A 175 2175 2175 HOH HOH . E 5 HOH A 176 2176 2176 HOH HOH . E 5 HOH A 177 2177 2177 HOH HOH . E 5 HOH A 178 2178 2178 HOH HOH . E 5 HOH A 179 2179 2179 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C22 BYP . A . B 2 8.663 -9.902 5.977 0.5 46.1 ? C22 BYP 299 A 1 HETATM 2 N N1 BYP . A . B 2 11.48 -10.726 14.204 0.5 34.14 ? N1 BYP 299 A 1 HETATM 3 C C2 BYP . A . B 2 12.581 -10.219 14.812 0.5 35.49 ? C2 BYP 299 A 1 HETATM 4 C C6 BYP . A . B 2 11.256 -10.367 12.929 0.5 34.37 ? C6 BYP 299 A 1 HETATM 5 C C4 BYP . A . B 2 13.127 -9.015 12.777 0.5 37.61 ? C4 BYP 299 A 1 HETATM 6 C C3 BYP . A . B 2 13.466 -9.327 14.121 0.5 36.17 ? C3 BYP 299 A 1 HETATM 7 N N5 BYP . A . B 2 12.031 -9.539 12.225 0.5 33.85 ? N5 BYP 299 A 1 HETATM 8 C C11 BYP . A . B 2 13.99 -6.323 8.101 0.5 40.27 ? C11 BYP 299 A 1 HETATM 9 C C10 BYP . A . B 2 14.483 -5.615 9.226 0.5 40.2 ? C10 BYP 299 A 1 HETATM 10 C C9 BYP . A . B 2 14.47 -6.225 10.51 0.5 40.39 ? C9 BYP 299 A 1 HETATM 11 C C8 BYP . A . B 2 13.966 -7.549 10.679 0.5 39.77 ? C8 BYP 299 A 1 HETATM 12 C C12 BYP . A . B 2 13.483 -7.64 8.251 0.5 40.17 ? C12 BYP 299 A 1 HETATM 13 C C17 BYP . A . B 2 7.98 -11.63 9.203 0.5 39.85 ? C17 BYP 299 A 1 HETATM 14 C C16 BYP . A . B 2 8.533 -11.75 10.506 0.5 38.31 ? C16 BYP 299 A 1 HETATM 15 C C13 BYP . A . B 2 13.469 -8.253 9.534 0.5 39.82 ? C13 BYP 299 A 1 HETATM 16 C C15 BYP . A . B 2 9.491 -10.806 10.957 0.5 38.59 ? C15 BYP 299 A 1 HETATM 17 C C18 BYP . A . B 2 8.386 -10.557 8.336 0.5 41.21 ? C18 BYP 299 A 1 HETATM 18 C C19 BYP . A . B 2 9.349 -9.61 8.797 0.5 41.43 ? C19 BYP 299 A 1 HETATM 19 C C20 BYP . A . B 2 9.896 -9.732 10.093 0.5 39.05 ? C20 BYP 299 A 1 HETATM 20 O O21 BYP . A . B 2 7.809 -10.464 7.041 0.5 44.9 ? O21 BYP 299 A 1 HETATM 21 N N7 BYP . A . B 2 13.98 -8.105 12.026 0.5 36.4 ? N7 BYP 299 A 1 HETATM 22 N N14 BYP . A . B 2 10.078 -10.925 12.294 0.5 35.64 ? N14 BYP 299 A 1 HETATM 23 BR BR BYP . A . B 2 15.019 -8.608 14.972 0.5 44.3 ? BR BYP 299 A 1 HETATM 24 C C23 BYP . A . B 2 7.759 -9.463 4.786 0.5 46.58 ? C23 BYP 299 A 1 HETATM 25 C C24 BYP . A . B 2 6.595 -10.498 4.581 0.5 46.68 ? C24 BYP 299 A 1 HETATM 26 N N25 BYP . A . B 2 5.932 -10.525 3.222 0.5 46.85 ? N25 BYP 299 A 1 HETATM 27 C C26 BYP . A . B 2 5.038 -9.371 2.919 0.5 46.97 ? C26 BYP 299 A 1 HETATM 28 C C27 BYP . A . B 2 6.798 -10.933 2.078 0.5 46.93 ? C27 BYP 299 A 1 HETATM 29 O O28 BYP . A . B 2 7.213 -8.178 5.069 0.5 47.84 ? O28 BYP 299 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #