data_1H2H # _model_server_result.job_id Dq7xKPXyAivNN-OKVozz5g _model_server_result.datetime_utc '2024-11-05 04:42:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1h2h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1242}' # _entry.id 1H2H # _exptl.entry_id 1H2H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1H2H _cell.length_a 63.196 _cell.length_b 63.196 _cell.length_c 125.673 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1H2H _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_666 -y+1,-x+1,-z+3/2 0 -1 0 -1 0 0 0 0 -1 63.196 63.196 188.5095 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 1 A MSE 1 1_555 A N THR 2 A THR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C GLY 7 A GLY 7 1_555 A N MSE 8 A MSE 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C MSE 8 A MSE 8 1_555 A N GLY 9 A GLY 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C ALA 187 A ALA 187 1_555 A N MSE 188 A MSE 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 A C MSE 188 A MSE 188 1_555 A N ASP 189 A ASP 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale6 A C SER 220 A SER 220 1_555 A N MSE 221 A MSE 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale7 A C MSE 221 A MSE 221 1_555 A N LEU 222 A LEU 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 1H2H _atom_sites.fract_transf_matrix[1][1] 0.015824 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015824 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007957 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 1242 1242 NAD NAD . C 3 HOH A 1 2001 2001 HOH HOH . C 3 HOH A 2 2002 2002 HOH HOH . C 3 HOH A 3 2003 2003 HOH HOH . C 3 HOH A 4 2004 2004 HOH HOH . C 3 HOH A 5 2005 2005 HOH HOH . C 3 HOH A 6 2006 2006 HOH HOH . C 3 HOH A 7 2007 2007 HOH HOH . C 3 HOH A 8 2008 2008 HOH HOH . C 3 HOH A 9 2009 2009 HOH HOH . C 3 HOH A 10 2010 2010 HOH HOH . C 3 HOH A 11 2011 2011 HOH HOH . C 3 HOH A 12 2012 2012 HOH HOH . C 3 HOH A 13 2013 2013 HOH HOH . C 3 HOH A 14 2014 2014 HOH HOH . C 3 HOH A 15 2015 2015 HOH HOH . C 3 HOH A 16 2016 2016 HOH HOH . C 3 HOH A 17 2017 2017 HOH HOH . C 3 HOH A 18 2018 2018 HOH HOH . C 3 HOH A 19 2019 2019 HOH HOH . C 3 HOH A 20 2020 2020 HOH HOH . C 3 HOH A 21 2021 2021 HOH HOH . C 3 HOH A 22 2022 2022 HOH HOH . C 3 HOH A 23 2023 2023 HOH HOH . C 3 HOH A 24 2024 2024 HOH HOH . C 3 HOH A 25 2025 2025 HOH HOH . C 3 HOH A 26 2026 2026 HOH HOH . C 3 HOH A 27 2027 2027 HOH HOH . C 3 HOH A 28 2028 2028 HOH HOH . C 3 HOH A 29 2029 2029 HOH HOH . C 3 HOH A 30 2030 2030 HOH HOH . C 3 HOH A 31 2031 2031 HOH HOH . C 3 HOH A 32 2032 2032 HOH HOH . C 3 HOH A 33 2033 2033 HOH HOH . C 3 HOH A 34 2034 2034 HOH HOH . C 3 HOH A 35 2035 2035 HOH HOH . C 3 HOH A 36 2036 2036 HOH HOH . C 3 HOH A 37 2037 2037 HOH HOH . C 3 HOH A 38 2038 2038 HOH HOH . C 3 HOH A 39 2039 2039 HOH HOH . C 3 HOH A 40 2040 2040 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . B 2 40.257 -11.128 101.204 1 60.64 ? PA NAD 1242 A 1 HETATM 2 O O1A NAD . . . B 2 39.379 -11.42 100.042 1 60.44 ? O1A NAD 1242 A 1 HETATM 3 O O2A NAD . . . B 2 39.634 -10.995 102.543 1 58.86 ? O2A NAD 1242 A 1 HETATM 4 O O5B NAD . . . B 2 41.44 -12.247 101.254 1 58.43 ? O5B NAD 1242 A 1 HETATM 5 C C5B NAD . . . B 2 42.075 -12.623 102.489 1 57.73 ? C5B NAD 1242 A 1 HETATM 6 C C4B NAD . . . B 2 42.403 -14.119 102.456 1 58.09 ? C4B NAD 1242 A 1 HETATM 7 O O4B NAD . . . B 2 43.532 -14.417 103.364 1 58.53 ? O4B NAD 1242 A 1 HETATM 8 C C3B NAD . . . B 2 41.213 -14.938 102.92 1 58.27 ? C3B NAD 1242 A 1 HETATM 9 O O3B NAD . . . B 2 40.913 -15.984 101.971 1 56.4 ? O3B NAD 1242 A 1 HETATM 10 C C2B NAD . . . B 2 41.613 -15.541 104.246 1 58.99 ? C2B NAD 1242 A 1 HETATM 11 O O2B NAD . . . B 2 41.107 -16.886 104.373 1 57.83 ? O2B NAD 1242 A 1 HETATM 12 C C1B NAD . . . B 2 43.134 -15.51 104.263 1 59.2 ? C1B NAD 1242 A 1 HETATM 13 N N9A NAD . . . B 2 43.706 -15.328 105.644 1 59.89 ? N9A NAD 1242 A 1 HETATM 14 C C8A NAD . . . B 2 43.259 -14.475 106.639 1 59.85 ? C8A NAD 1242 A 1 HETATM 15 N N7A NAD . . . B 2 44.071 -14.6 107.718 1 60.17 ? N7A NAD 1242 A 1 HETATM 16 C C5A NAD . . . B 2 44.955 -15.494 107.361 1 59.89 ? C5A NAD 1242 A 1 HETATM 17 C C6A NAD . . . B 2 45.972 -15.9 108.207 1 59.99 ? C6A NAD 1242 A 1 HETATM 18 N N6A NAD . . . B 2 46.099 -15.411 109.442 1 60.97 ? N6A NAD 1242 A 1 HETATM 19 N N1A NAD . . . B 2 46.839 -16.842 107.722 1 59.63 ? N1A NAD 1242 A 1 HETATM 20 C C2A NAD . . . B 2 46.676 -17.341 106.451 1 59.5 ? C2A NAD 1242 A 1 HETATM 21 N N3A NAD . . . B 2 45.648 -16.904 105.653 1 59.08 ? N3A NAD 1242 A 1 HETATM 22 C C4A NAD . . . B 2 44.776 -15.963 106.124 1 59.75 ? C4A NAD 1242 A 1 HETATM 23 O O3 NAD . . . B 2 41.071 -9.777 100.881 1 61.68 ? O3 NAD 1242 A 1 HETATM 24 P PN NAD . . . B 2 42.229 -9.306 99.845 1 63 ? PN NAD 1242 A 1 HETATM 25 O O1N NAD . . . B 2 41.746 -8.096 99.142 1 63.01 ? O1N NAD 1242 A 1 HETATM 26 O O2N NAD . . . B 2 42.675 -10.473 99.045 1 63.58 ? O2N NAD 1242 A 1 HETATM 27 O O5D NAD . . . B 2 43.412 -8.885 100.837 1 62.8 ? O5D NAD 1242 A 1 HETATM 28 C C5D NAD . . . B 2 43.053 -8.232 102.046 1 65.52 ? C5D NAD 1242 A 1 HETATM 29 C C4D NAD . . . B 2 44.255 -7.737 102.788 1 65.08 ? C4D NAD 1242 A 1 HETATM 30 O O4D NAD . . . B 2 45.038 -6.858 101.904 1 64.61 ? O4D NAD 1242 A 1 HETATM 31 C C3D NAD . . . B 2 43.791 -6.934 103.969 1 65.23 ? C3D NAD 1242 A 1 HETATM 32 O O3D NAD . . . B 2 44.376 -7.428 105.184 1 66.41 ? O3D NAD 1242 A 1 HETATM 33 C C2D NAD . . . B 2 44.216 -5.516 103.707 1 64.84 ? C2D NAD 1242 A 1 HETATM 34 O O2D NAD . . . B 2 44.762 -4.928 104.901 1 66.88 ? O2D NAD 1242 A 1 HETATM 35 C C1D NAD . . . B 2 45.254 -5.594 102.604 1 64.34 ? C1D NAD 1242 A 1 HETATM 36 N N1N NAD . . . B 2 45.168 -4.416 101.674 1 62.01 ? N1N NAD 1242 A 1 HETATM 37 C C2N NAD . . . B 2 46.218 -3.455 101.697 1 61.47 ? C2N NAD 1242 A 1 HETATM 38 C C3N NAD . . . B 2 46.161 -2.324 100.858 1 61.66 ? C3N NAD 1242 A 1 HETATM 39 C C7N NAD . . . B 2 47.304 -1.272 100.873 1 61.47 ? C7N NAD 1242 A 1 HETATM 40 O O7N NAD . . . B 2 47.251 -0.273 100.157 1 62.93 ? O7N NAD 1242 A 1 HETATM 41 N N7N NAD . . . B 2 48.314 -1.52 101.712 1 61.2 ? N7N NAD 1242 A 1 HETATM 42 C C4N NAD . . . B 2 45.047 -2.158 99.987 1 61.74 ? C4N NAD 1242 A 1 HETATM 43 C C5N NAD . . . B 2 43.997 -3.109 99.95 1 61.64 ? C5N NAD 1242 A 1 HETATM 44 C C6N NAD . . . B 2 44.048 -4.236 100.786 1 61.64 ? C6N NAD 1242 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 44 #