data_1H2S # _model_server_result.job_id RGYayEbbGaGKdXJw0yE0gg _model_server_result.datetime_utc '2025-02-06 19:35:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1h2s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 1H2S # _exptl.entry_id 1H2S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1H2S _cell.length_a 124.3 _cell.length_b 46.96 _cell.length_c 53.84 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1H2S _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 46.96 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 205 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 205 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 302 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.107 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 312 n n C1 C6 RET sing 313 n n C1 C16 RET sing 314 n n C1 C17 RET sing 315 n n C2 C3 RET sing 316 n n C2 H21 RET sing 317 n n C2 H22 RET sing 318 n n C3 C4 RET sing 319 n n C3 H31 RET sing 320 n n C3 H32 RET sing 321 n n C4 C5 RET sing 322 n n C4 H41 RET sing 323 n n C4 H42 RET sing 324 n n C5 C6 RET doub 325 n n C5 C18 RET sing 326 n n C6 C7 RET sing 327 n n C7 C8 RET doub 328 e n C7 H7 RET sing 329 n n C8 C9 RET sing 330 n n C8 H8 RET sing 331 n n C9 C10 RET doub 332 e n C9 C19 RET sing 333 n n C10 C11 RET sing 334 n n C10 H10 RET sing 335 n n C11 C12 RET doub 336 e n C11 H11 RET sing 337 n n C12 C13 RET sing 338 n n C12 H12 RET sing 339 n n C13 C14 RET doub 340 e n C13 C20 RET sing 341 n n C14 C15 RET sing 342 n n C14 H14 RET sing 343 n n C15 O1 RET doub 344 n n C15 H15 RET sing 345 n n C16 H161 RET sing 346 n n C16 H162 RET sing 347 n n C16 H163 RET sing 348 n n C17 H171 RET sing 349 n n C17 H172 RET sing 350 n n C17 H173 RET sing 351 n n C18 H181 RET sing 352 n n C18 H182 RET sing 353 n n C18 H183 RET sing 354 n n C19 H191 RET sing 355 n n C19 H192 RET sing 356 n n C19 H193 RET sing 357 n n C20 H201 RET sing 358 n n C20 H202 RET sing 359 n n C20 H203 RET sing 360 n n # _atom_sites.entry_id 1H2S _atom_sites.fract_transf_matrix[1][1] 0.008045 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021295 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018573 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 BOG A 1 301 301 BOG BOG . D 4 RET A 1 302 302 RET RET . E 5 HOH A 1 2001 2001 HOH HOH . E 5 HOH A 2 2002 2002 HOH HOH . E 5 HOH A 3 2003 2003 HOH HOH . E 5 HOH A 4 2004 2004 HOH HOH . E 5 HOH A 5 2005 2005 HOH HOH . E 5 HOH A 6 2006 2006 HOH HOH . E 5 HOH A 7 2007 2007 HOH HOH . E 5 HOH A 8 2008 2008 HOH HOH . E 5 HOH A 9 2009 2009 HOH HOH . E 5 HOH A 10 2010 2010 HOH HOH . E 5 HOH A 11 2011 2011 HOH HOH . E 5 HOH A 12 2012 2012 HOH HOH . E 5 HOH A 13 2013 2013 HOH HOH . E 5 HOH A 14 2014 2014 HOH HOH . E 5 HOH A 15 2015 2015 HOH HOH . E 5 HOH A 16 2016 2016 HOH HOH . E 5 HOH A 17 2017 2017 HOH HOH . E 5 HOH A 18 2018 2018 HOH HOH . E 5 HOH A 19 2019 2019 HOH HOH . E 5 HOH A 20 2020 2020 HOH HOH . E 5 HOH A 21 2021 2021 HOH HOH . E 5 HOH A 22 2022 2022 HOH HOH . E 5 HOH A 23 2023 2023 HOH HOH . E 5 HOH A 24 2024 2024 HOH HOH . E 5 HOH A 25 2025 2025 HOH HOH . E 5 HOH A 26 2026 2026 HOH HOH . E 5 HOH A 27 2027 2027 HOH HOH . E 5 HOH A 28 2028 2028 HOH HOH . E 5 HOH A 29 2029 2029 HOH HOH . E 5 HOH A 30 2030 2030 HOH HOH . E 5 HOH A 31 2031 2031 HOH HOH . E 5 HOH A 32 2032 2032 HOH HOH . E 5 HOH A 33 2033 2033 HOH HOH . E 5 HOH A 34 2034 2034 HOH HOH . E 5 HOH A 35 2035 2035 HOH HOH . E 5 HOH A 36 2036 2036 HOH HOH . E 5 HOH A 37 2037 2037 HOH HOH . E 5 HOH A 38 2038 2038 HOH HOH . E 5 HOH A 39 2039 2039 HOH HOH . F 5 HOH B 1 2001 2001 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . D 4 23.253 23.164 27.317 1 18.29 ? C1 RET 302 A 1 HETATM 2 C C2 RET . . . D 4 23.688 24.223 28.329 1 16.93 ? C2 RET 302 A 1 HETATM 3 C C3 RET . . . D 4 24.579 25.292 27.766 1 16.88 ? C3 RET 302 A 1 HETATM 4 C C4 RET . . . D 4 23.956 26 26.581 1 16.55 ? C4 RET 302 A 1 HETATM 5 C C5 RET . . . D 4 23.3 25.07 25.556 1 17 ? C5 RET 302 A 1 HETATM 6 C C6 RET . . . D 4 23.046 23.729 25.85 1 16.64 ? C6 RET 302 A 1 HETATM 7 C C7 RET . . . D 4 22.611 22.912 24.726 1 15.07 ? C7 RET 302 A 1 HETATM 8 C C8 RET . . . D 4 22.307 21.565 24.65 1 16.15 ? C8 RET 302 A 1 HETATM 9 C C9 RET . . . D 4 21.895 20.833 23.448 1 16.92 ? C9 RET 302 A 1 HETATM 10 C C10 RET . . . D 4 21.691 19.485 23.672 1 16.22 ? C10 RET 302 A 1 HETATM 11 C C11 RET . . . D 4 21.253 18.578 22.597 1 18.33 ? C11 RET 302 A 1 HETATM 12 C C12 RET . . . D 4 21.144 17.265 23.017 1 16.4 ? C12 RET 302 A 1 HETATM 13 C C13 RET . . . D 4 20.753 16.194 22.111 1 19.79 ? C13 RET 302 A 1 HETATM 14 C C14 RET . . . D 4 20.731 14.974 22.76 1 21.3 ? C14 RET 302 A 1 HETATM 15 C C15 RET . . . D 4 20.182 13.746 22.199 1 26.55 ? C15 RET 302 A 1 HETATM 16 C C16 RET . . . D 4 24.361 22.042 27.315 1 15.76 ? C16 RET 302 A 1 HETATM 17 C C17 RET . . . D 4 21.907 22.592 27.951 1 15.6 ? C17 RET 302 A 1 HETATM 18 C C18 RET . . . D 4 23.135 25.82 24.266 1 16.37 ? C18 RET 302 A 1 HETATM 19 C C19 RET . . . D 4 21.724 21.523 22.131 1 16.66 ? C19 RET 302 A 1 HETATM 20 C C20 RET . . . D 4 20.446 16.461 20.674 1 18.98 ? C20 RET 302 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 444 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #