data_1H3M # _model_server_result.job_id d857pVOJXhEtUtHg3EM0dQ _model_server_result.datetime_utc '2024-12-26 10:21:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1h3m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1231}' # _entry.id 1H3M # _exptl.entry_id 1H3M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 102.178 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PENTANE-1,5-DIAMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1H3M _cell.length_a 73.604 _cell.length_b 73.604 _cell.length_c 175.562 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1H3M _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 24 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 25 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 24 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 25 _struct_conn.ptnr2_symmetry 7_644 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.868 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C5 H14 N2' _chem_comp.formula_weight 102.178 _chem_comp.id N2P _chem_comp.mon_nstd_flag . _chem_comp.name PENTANE-1,5-DIAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 N2P sing 237 n n C1 NE2 N2P sing 238 n n C1 H1C1 N2P sing 239 n n C1 H1C2 N2P sing 240 n n C2 C3 N2P sing 241 n n C2 H2C1 N2P sing 242 n n C2 H2C2 N2P sing 243 n n C3 C4 N2P sing 244 n n C3 H3C1 N2P sing 245 n n C3 H3C2 N2P sing 246 n n C4 C5 N2P sing 247 n n C4 H4C1 N2P sing 248 n n C4 H4C2 N2P sing 249 n n NE2 HE21 N2P sing 250 n n NE2 HE22 N2P sing 251 n n C5 N1 N2P sing 252 n n C5 H5C1 N2P sing 253 n n C5 H5C2 N2P sing 254 n n N1 H1N1 N2P sing 255 n n N1 H1N2 N2P sing 256 n n # _atom_sites.entry_id 1H3M _atom_sites.fract_transf_matrix[1][1] 0.013586 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013586 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005696 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL A 1 1230 1230 CL CL . D 3 N2P A 1 1231 1231 N2P N2P . E 2 CL A 1 1232 1232 CL CL . F 2 CL B 1 1230 1230 CL CL . G 2 CL B 1 1231 1231 CL CL . H 2 CL B 1 1232 1232 CL CL . I 4 HOH A 1 2001 2001 HOH HOH . I 4 HOH A 2 2002 2002 HOH HOH . I 4 HOH A 3 2003 2003 HOH HOH . I 4 HOH A 4 2004 2004 HOH HOH . I 4 HOH A 5 2005 2005 HOH HOH . I 4 HOH A 6 2006 2006 HOH HOH . I 4 HOH A 7 2007 2007 HOH HOH . I 4 HOH A 8 2008 2008 HOH HOH . I 4 HOH A 9 2009 2009 HOH HOH . I 4 HOH A 10 2010 2010 HOH HOH . I 4 HOH A 11 2011 2011 HOH HOH . I 4 HOH A 12 2012 2012 HOH HOH . I 4 HOH A 13 2013 2013 HOH HOH . I 4 HOH A 14 2014 2014 HOH HOH . I 4 HOH A 15 2015 2015 HOH HOH . I 4 HOH A 16 2016 2016 HOH HOH . I 4 HOH A 17 2017 2017 HOH HOH . I 4 HOH A 18 2018 2018 HOH HOH . I 4 HOH A 19 2019 2019 HOH HOH . I 4 HOH A 20 2020 2020 HOH HOH . I 4 HOH A 21 2021 2021 HOH HOH . I 4 HOH A 22 2022 2022 HOH HOH . I 4 HOH A 23 2023 2023 HOH HOH . I 4 HOH A 24 2024 2024 HOH HOH . I 4 HOH A 25 2025 2025 HOH HOH . I 4 HOH A 26 2026 2026 HOH HOH . I 4 HOH A 27 2027 2027 HOH HOH . I 4 HOH A 28 2028 2028 HOH HOH . I 4 HOH A 29 2029 2029 HOH HOH . I 4 HOH A 30 2030 2030 HOH HOH . I 4 HOH A 31 2031 2031 HOH HOH . I 4 HOH A 32 2032 2032 HOH HOH . I 4 HOH A 33 2033 2033 HOH HOH . I 4 HOH A 34 2034 2034 HOH HOH . I 4 HOH A 35 2035 2035 HOH HOH . I 4 HOH A 36 2036 2036 HOH HOH . I 4 HOH A 37 2037 2037 HOH HOH . I 4 HOH A 38 2038 2038 HOH HOH . I 4 HOH A 39 2039 2039 HOH HOH . I 4 HOH A 40 2040 2040 HOH HOH . I 4 HOH A 41 2041 2041 HOH HOH . J 4 HOH B 1 2001 2001 HOH HOH . J 4 HOH B 2 2002 2002 HOH HOH . J 4 HOH B 3 2003 2003 HOH HOH . J 4 HOH B 4 2004 2004 HOH HOH . J 4 HOH B 5 2005 2005 HOH HOH . J 4 HOH B 6 2006 2006 HOH HOH . J 4 HOH B 7 2007 2007 HOH HOH . J 4 HOH B 8 2008 2008 HOH HOH . J 4 HOH B 9 2009 2009 HOH HOH . J 4 HOH B 10 2010 2010 HOH HOH . J 4 HOH B 11 2011 2011 HOH HOH . J 4 HOH B 12 2012 2012 HOH HOH . J 4 HOH B 13 2013 2013 HOH HOH . J 4 HOH B 14 2014 2014 HOH HOH . J 4 HOH B 15 2015 2015 HOH HOH . J 4 HOH B 16 2016 2016 HOH HOH . J 4 HOH B 17 2017 2017 HOH HOH . J 4 HOH B 18 2018 2018 HOH HOH . J 4 HOH B 19 2019 2019 HOH HOH . J 4 HOH B 20 2020 2020 HOH HOH . J 4 HOH B 21 2021 2021 HOH HOH . J 4 HOH B 22 2022 2022 HOH HOH . J 4 HOH B 23 2023 2023 HOH HOH . J 4 HOH B 24 2024 2024 HOH HOH . J 4 HOH B 25 2025 2025 HOH HOH . J 4 HOH B 26 2026 2026 HOH HOH . J 4 HOH B 27 2027 2027 HOH HOH . J 4 HOH B 28 2028 2028 HOH HOH . J 4 HOH B 29 2029 2029 HOH HOH . J 4 HOH B 30 2030 2030 HOH HOH . J 4 HOH B 31 2031 2031 HOH HOH . J 4 HOH B 32 2032 2032 HOH HOH . J 4 HOH B 33 2033 2033 HOH HOH . J 4 HOH B 34 2034 2034 HOH HOH . J 4 HOH B 35 2035 2035 HOH HOH . J 4 HOH B 36 2036 2036 HOH HOH . J 4 HOH B 37 2037 2037 HOH HOH . J 4 HOH B 38 2038 2038 HOH HOH . J 4 HOH B 39 2039 2039 HOH HOH . J 4 HOH B 40 2040 2040 HOH HOH . J 4 HOH B 41 2041 2041 HOH HOH . J 4 HOH B 42 2042 2042 HOH HOH . J 4 HOH B 43 2043 2043 HOH HOH . J 4 HOH B 44 2044 2044 HOH HOH . J 4 HOH B 45 2045 2045 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 N2P . . . D 3 95.668 36.374 -118.712 1 51.35 ? C1 N2P 1231 A 1 HETATM 2 C C2 N2P . . . D 3 96.742 35.466 -118.153 1 54.06 ? C2 N2P 1231 A 1 HETATM 3 C C3 N2P . . . D 3 97.955 36.301 -117.707 1 53.77 ? C3 N2P 1231 A 1 HETATM 4 C C4 N2P . . . D 3 98.869 35.503 -116.806 1 47.53 ? C4 N2P 1231 A 1 HETATM 5 N NE2 N2P . . . D 3 94.564 35.501 -119.004 1 52.32 ? NE2 N2P 1231 A 1 HETATM 6 C C5 N2P . . . D 3 100.179 35.318 -117.536 1 50.94 ? C5 N2P 1231 A 1 HETATM 7 N N1 N2P . . . D 3 101.13 36.258 -116.975 1 48.16 ? N1 N2P 1231 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 7 #