data_1H6V # _model_server_result.job_id Odpmr1cMROAVpBu4C_UIuA _model_server_result.datetime_utc '2024-11-24 01:45:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1h6v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":600}' # _entry.id 1H6V # _exptl.entry_id 1H6V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.64 _cell.angle_gamma 90 _cell.entry_id 1H6V _cell.length_a 78.92 _cell.length_b 140.464 _cell.length_c 170.832 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1H6V _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS dimeric 2 author_and_software_defined_assembly 1 PQS dimeric 2 author_and_software_defined_assembly 2 PQS dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,I,J,S,T 1 1 C,D,K,L,M,N,U,V 2 1 E,F,O,P,Q,R,W,X 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 I N N ? 2 K N N ? 2 M N N ? 2 O N N ? 2 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 59 A CYS 59 1_555 A SG CYS 64 A CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? disulf ? disulf2 B SG CYS 59 B CYS 59 1_555 B SG CYS 64 B CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? disulf ? disulf3 C SG CYS 59 C CYS 59 1_555 C SG CYS 64 C CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 D SG CYS 59 D CYS 59 1_555 D SG CYS 64 D CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? disulf ? disulf5 E SG CYS 59 E CYS 59 1_555 E SG CYS 64 E CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? disulf ? disulf6 F SG CYS 59 F CYS 59 1_555 F SG CYS 64 F CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 1H6V _atom_sites.fract_transf_matrix[1][1] 0.012671 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001028 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007119 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005873 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 FAD A 1 600 600 FAD FAD . H 3 NDP A 1 601 601 NDP NDP . I 2 FAD B 1 600 600 FAD FAD . J 3 NDP B 1 601 601 NDP NDP . K 2 FAD C 1 600 600 FAD FAD . L 3 NDP C 1 601 601 NDP NDP . M 2 FAD D 1 600 600 FAD FAD . N 3 NDP D 1 601 601 NDP NDP . O 2 FAD E 1 600 600 FAD FAD . P 3 NDP E 1 601 601 NDP NDP . Q 2 FAD F 1 600 600 FAD FAD . R 3 NDP F 1 601 601 NDP NDP . S 4 HOH A 1 2001 2001 HOH HOH . T 4 HOH B 1 2001 2001 HOH HOH . U 4 HOH C 1 2001 2001 HOH HOH . U 4 HOH C 2 2002 2002 HOH HOH . U 4 HOH C 3 2003 2003 HOH HOH . V 4 HOH D 1 2001 2001 HOH HOH . W 4 HOH E 1 2001 2001 HOH HOH . W 4 HOH E 2 2002 2002 HOH HOH . X 4 HOH F 1 2001 2001 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . O 2 28.965 22.311 39.885 1 18.18 ? PA FAD 600 E 1 HETATM 2 O O1A FAD . . . O 2 28.334 23.354 39.107 1 19 ? O1A FAD 600 E 1 HETATM 3 O O2A FAD . . . O 2 28.638 20.907 39.306 1 18.19 ? O2A FAD 600 E 1 HETATM 4 O O5B FAD . . . O 2 28.518 22.496 41.417 1 20.46 ? O5B FAD 600 E 1 HETATM 5 C C5B FAD . . . O 2 28.665 23.74 42.067 1 23.99 ? C5B FAD 600 E 1 HETATM 6 C C4B FAD . . . O 2 27.783 23.743 43.287 1 27.26 ? C4B FAD 600 E 1 HETATM 7 O O4B FAD . . . O 2 28.314 24.598 44.263 1 33.19 ? O4B FAD 600 E 1 HETATM 8 C C3B FAD . . . O 2 26.455 24.336 42.907 1 29.8 ? C3B FAD 600 E 1 HETATM 9 O O3B FAD . . . O 2 25.539 23.721 43.774 1 26.92 ? O3B FAD 600 E 1 HETATM 10 C C2B FAD . . . O 2 26.611 25.781 43.254 1 33.1 ? C2B FAD 600 E 1 HETATM 11 O O2B FAD . . . O 2 25.387 26.313 43.617 1 35.14 ? O2B FAD 600 E 1 HETATM 12 C C1B FAD . . . O 2 27.315 25.58 44.556 1 38.02 ? C1B FAD 600 E 1 HETATM 13 N N9A FAD . . . O 2 27.805 26.855 45.098 1 44 ? N9A FAD 600 E 1 HETATM 14 C C8A FAD . . . O 2 28.132 27.996 44.412 1 48.21 ? C8A FAD 600 E 1 HETATM 15 N N7A FAD . . . O 2 28.535 28.927 45.33 1 53.55 ? N7A FAD 600 E 1 HETATM 16 C C5A FAD . . . O 2 28.48 28.371 46.582 1 52.93 ? C5A FAD 600 E 1 HETATM 17 C C6A FAD . . . O 2 28.747 28.847 47.891 1 55.72 ? C6A FAD 600 E 1 HETATM 18 N N6A FAD . . . O 2 29.472 29.934 48.11 1 56.65 ? N6A FAD 600 E 1 HETATM 19 N N1A FAD . . . O 2 28.583 28.052 48.993 1 54.89 ? N1A FAD 600 E 1 HETATM 20 C C2A FAD . . . O 2 28.103 26.781 48.771 1 54.56 ? C2A FAD 600 E 1 HETATM 21 N N3A FAD . . . O 2 27.82 26.32 47.492 1 52.32 ? N3A FAD 600 E 1 HETATM 22 C C4A FAD . . . O 2 28.011 27.089 46.414 1 48.32 ? C4A FAD 600 E 1 HETATM 23 N N1 FAD . . . O 2 29.328 17.95 31.384 1 13.69 ? N1 FAD 600 E 1 HETATM 24 C C2 FAD . . . O 2 29.59 16.69 30.878 1 14.65 ? C2 FAD 600 E 1 HETATM 25 O O2 FAD . . . O 2 30.655 16.106 31.145 1 17.9 ? O2 FAD 600 E 1 HETATM 26 N N3 FAD . . . O 2 28.676 16.071 30.066 1 12.41 ? N3 FAD 600 E 1 HETATM 27 C C4 FAD . . . O 2 27.501 16.702 29.81 1 11.63 ? C4 FAD 600 E 1 HETATM 28 O O4 FAD . . . O 2 26.69 16.155 29.101 1 10.5 ? O4 FAD 600 E 1 HETATM 29 C C4X FAD . . . O 2 27.223 17.945 30.325 1 12.72 ? C4X FAD 600 E 1 HETATM 30 N N5 FAD . . . O 2 26.022 18.538 29.998 1 14.73 ? N5 FAD 600 E 1 HETATM 31 C C5X FAD . . . O 2 25.735 19.805 30.47 1 14.35 ? C5X FAD 600 E 1 HETATM 32 C C6 FAD . . . O 2 24.54 20.463 30.191 1 12.12 ? C6 FAD 600 E 1 HETATM 33 C C7 FAD . . . O 2 24.294 21.724 30.718 1 10.46 ? C7 FAD 600 E 1 HETATM 34 C C7M FAD . . . O 2 23.024 22.46 30.477 1 12.29 ? C7M FAD 600 E 1 HETATM 35 C C8 FAD . . . O 2 25.218 22.327 31.512 1 12.82 ? C8 FAD 600 E 1 HETATM 36 C C8M FAD . . . O 2 25.018 23.665 32.144 1 13.99 ? C8M FAD 600 E 1 HETATM 37 C C9 FAD . . . O 2 26.402 21.68 31.777 1 16.22 ? C9 FAD 600 E 1 HETATM 38 C C9A FAD . . . O 2 26.667 20.428 31.279 1 14.75 ? C9A FAD 600 E 1 HETATM 39 N N10 FAD . . . O 2 27.868 19.87 31.618 1 13.12 ? N10 FAD 600 E 1 HETATM 40 C C10 FAD . . . O 2 28.153 18.601 31.114 1 12.96 ? C10 FAD 600 E 1 HETATM 41 C C1' FAD . . . O 2 28.778 20.753 32.443 1 10.84 ? C1' FAD 600 E 1 HETATM 42 C C2' FAD . . . O 2 29.046 20.068 33.785 1 15.49 ? C2' FAD 600 E 1 HETATM 43 O O2' FAD . . . O 2 27.817 19.694 34.403 1 13.5 ? O2' FAD 600 E 1 HETATM 44 C C3' FAD . . . O 2 30.041 20.814 34.699 1 16.74 ? C3' FAD 600 E 1 HETATM 45 O O3' FAD . . . O 2 31.306 20.712 34.096 1 16.2 ? O3' FAD 600 E 1 HETATM 46 C C4' FAD . . . O 2 30.166 20.23 36.122 1 18.67 ? C4' FAD 600 E 1 HETATM 47 O O4' FAD . . . O 2 28.904 20.176 36.811 1 20.78 ? O4' FAD 600 E 1 HETATM 48 C C5' FAD . . . O 2 31.149 21.03 36.99 1 17.17 ? C5' FAD 600 E 1 HETATM 49 O O5' FAD . . . O 2 30.969 20.597 38.321 1 16.52 ? O5' FAD 600 E 1 HETATM 50 P P FAD . . . O 2 31.567 21.56 39.426 1 19.71 ? P FAD 600 E 1 HETATM 51 O O1P FAD . . . O 2 32.155 20.697 40.549 1 19.89 ? O1P FAD 600 E 1 HETATM 52 O O2P FAD . . . O 2 32.549 22.476 38.665 1 20.48 ? O2P FAD 600 E 1 HETATM 53 O O3P FAD . . . O 2 30.512 22.646 39.91 1 14.91 ? O3P FAD 600 E 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 81 _model_server_stats.query_time_ms 760 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 53 #