data_1H78
#
_model_server_result.job_id            eWIv4LTUvKEa9oJQmRQ0aw 
_model_server_result.datetime_utc      '2025-03-04 21:32:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1h78 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1589}' 
#
_entry.id    1H78 
#
_exptl.entry_id    1H78 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              467.157 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1H78 
_cell.length_a            97.935 
_cell.length_b            97.935 
_cell.length_c            242.515 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1H78 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 97.935 97.935 121.2575 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C O1A DCP . A DCP 1589 1_555 D MG MG . A MG 1590 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.784 ? 
metalc ? metalc2 C O1G DCP . A DCP 1589 1_555 D MG MG . A MG 1590 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.83 ? 
metalc ? metalc3 C O2B DCP . A DCP 1589 1_555 D MG MG . A MG 1590 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? 
metalc ? metalc4 D MG MG . A MG 1590 1_555 E O HOH . A HOH 2096 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
#
_chem_comp.formula           'C9 H16 N3 O13 P3' 
_chem_comp.formula_weight    467.157 
_chem_comp.id                DCP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 DCP sing 83 n n 
N1 C6 DCP sing 84 n n 
N1 C1' DCP sing 85 n n 
C2 N3 DCP sing 86 n n 
C2 O2 DCP doub 87 n n 
N3 C4 DCP doub 88 n n 
C4 C5 DCP sing 89 n n 
C4 N4 DCP sing 90 n n 
C5 C6 DCP doub 91 n n 
C5 H5 DCP sing 92 n n 
C6 H6 DCP sing 93 n n 
N4 HN41 DCP sing 94 n n 
N4 HN42 DCP sing 95 n n 
C1' C2' DCP sing 96 n n 
C1' O4' DCP sing 97 n n 
C1' H1' DCP sing 98 n n 
C2' C3' DCP sing 99 n n 
C2' "H2'1" DCP sing 100 n n 
C2' "H2'2" DCP sing 101 n n 
C3' C4' DCP sing 102 n n 
C3' O3' DCP sing 103 n n 
C3' H3' DCP sing 104 n n 
C4' O4' DCP sing 105 n n 
C4' C5' DCP sing 106 n n 
C4' H4' DCP sing 107 n n 
O3' HO3' DCP sing 108 n n 
C5' O5' DCP sing 109 n n 
C5' "H5'1" DCP sing 110 n n 
C5' "H5'2" DCP sing 111 n n 
O5' PA DCP sing 112 n n 
PA O1A DCP doub 113 n n 
PA O2A DCP sing 114 n n 
PA O3A DCP sing 115 n n 
O2A HOA2 DCP sing 116 n n 
O3A PB DCP sing 117 n n 
PB O1B DCP doub 118 n n 
PB O2B DCP sing 119 n n 
PB O3B DCP sing 120 n n 
O2B HOB2 DCP sing 121 n n 
O3B PG DCP sing 122 n n 
PG O1G DCP doub 123 n n 
PG O2G DCP sing 124 n n 
PG O3G DCP sing 125 n n 
O2G HOG2 DCP sing 126 n n 
O3G HOG3 DCP sing 127 n n 
#
_atom_sites.entry_id                     1H78 
_atom_sites.fract_transf_matrix[1][1]    0.010211 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010211 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004123 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 DCP A 1 1588 1588 DCP DCP . 
C 2 DCP A 1 1589 1589 DCP DCP . 
D 3 MG A 1 1590 1590 MG MG . 
E 4 HOH A 1 2001 2001 HOH HOH . 
E 4 HOH A 2 2002 2002 HOH HOH . 
E 4 HOH A 3 2003 2003 HOH HOH . 
E 4 HOH A 4 2004 2004 HOH HOH . 
E 4 HOH A 5 2005 2005 HOH HOH . 
E 4 HOH A 6 2006 2006 HOH HOH . 
E 4 HOH A 7 2007 2007 HOH HOH . 
E 4 HOH A 8 2008 2008 HOH HOH . 
E 4 HOH A 9 2009 2009 HOH HOH . 
E 4 HOH A 10 2010 2010 HOH HOH . 
E 4 HOH A 11 2011 2011 HOH HOH . 
E 4 HOH A 12 2012 2012 HOH HOH . 
E 4 HOH A 13 2013 2013 HOH HOH . 
E 4 HOH A 14 2014 2014 HOH HOH . 
E 4 HOH A 15 2015 2015 HOH HOH . 
E 4 HOH A 16 2016 2016 HOH HOH . 
E 4 HOH A 17 2017 2017 HOH HOH . 
E 4 HOH A 18 2018 2018 HOH HOH . 
E 4 HOH A 19 2019 2019 HOH HOH . 
E 4 HOH A 20 2020 2020 HOH HOH . 
E 4 HOH A 21 2021 2021 HOH HOH . 
E 4 HOH A 22 2022 2022 HOH HOH . 
E 4 HOH A 23 2023 2023 HOH HOH . 
E 4 HOH A 24 2024 2024 HOH HOH . 
E 4 HOH A 25 2025 2025 HOH HOH . 
E 4 HOH A 26 2026 2026 HOH HOH . 
E 4 HOH A 27 2027 2027 HOH HOH . 
E 4 HOH A 28 2028 2028 HOH HOH . 
E 4 HOH A 29 2029 2029 HOH HOH . 
E 4 HOH A 30 2030 2030 HOH HOH . 
E 4 HOH A 31 2031 2031 HOH HOH . 
E 4 HOH A 32 2032 2032 HOH HOH . 
E 4 HOH A 33 2033 2033 HOH HOH . 
E 4 HOH A 34 2034 2034 HOH HOH . 
E 4 HOH A 35 2035 2035 HOH HOH . 
E 4 HOH A 36 2036 2036 HOH HOH . 
E 4 HOH A 37 2037 2037 HOH HOH . 
E 4 HOH A 38 2038 2038 HOH HOH . 
E 4 HOH A 39 2039 2039 HOH HOH . 
E 4 HOH A 40 2040 2040 HOH HOH . 
E 4 HOH A 41 2041 2041 HOH HOH . 
E 4 HOH A 42 2042 2042 HOH HOH . 
E 4 HOH A 43 2043 2043 HOH HOH . 
E 4 HOH A 44 2044 2044 HOH HOH . 
E 4 HOH A 45 2045 2045 HOH HOH . 
E 4 HOH A 46 2046 2046 HOH HOH . 
E 4 HOH A 47 2047 2047 HOH HOH . 
E 4 HOH A 48 2048 2048 HOH HOH . 
E 4 HOH A 49 2049 2049 HOH HOH . 
E 4 HOH A 50 2050 2050 HOH HOH . 
E 4 HOH A 51 2051 2051 HOH HOH . 
E 4 HOH A 52 2052 2052 HOH HOH . 
E 4 HOH A 53 2053 2053 HOH HOH . 
E 4 HOH A 54 2054 2054 HOH HOH . 
E 4 HOH A 55 2055 2055 HOH HOH . 
E 4 HOH A 56 2056 2056 HOH HOH . 
E 4 HOH A 57 2057 2057 HOH HOH . 
E 4 HOH A 58 2058 2058 HOH HOH . 
E 4 HOH A 59 2059 2059 HOH HOH . 
E 4 HOH A 60 2060 2060 HOH HOH . 
E 4 HOH A 61 2061 2061 HOH HOH . 
E 4 HOH A 62 2062 2062 HOH HOH . 
E 4 HOH A 63 2063 2063 HOH HOH . 
E 4 HOH A 64 2064 2064 HOH HOH . 
E 4 HOH A 65 2065 2065 HOH HOH . 
E 4 HOH A 66 2066 2066 HOH HOH . 
E 4 HOH A 67 2067 2067 HOH HOH . 
E 4 HOH A 68 2068 2068 HOH HOH . 
E 4 HOH A 69 2069 2069 HOH HOH . 
E 4 HOH A 70 2070 2070 HOH HOH . 
E 4 HOH A 71 2071 2071 HOH HOH . 
E 4 HOH A 72 2072 2072 HOH HOH . 
E 4 HOH A 73 2073 2073 HOH HOH . 
E 4 HOH A 74 2074 2074 HOH HOH . 
E 4 HOH A 75 2075 2075 HOH HOH . 
E 4 HOH A 76 2076 2076 HOH HOH . 
E 4 HOH A 77 2077 2077 HOH HOH . 
E 4 HOH A 78 2078 2078 HOH HOH . 
E 4 HOH A 79 2079 2079 HOH HOH . 
E 4 HOH A 80 2080 2080 HOH HOH . 
E 4 HOH A 81 2081 2081 HOH HOH . 
E 4 HOH A 82 2082 2082 HOH HOH . 
E 4 HOH A 83 2083 2083 HOH HOH . 
E 4 HOH A 84 2084 2084 HOH HOH . 
E 4 HOH A 85 2085 2085 HOH HOH . 
E 4 HOH A 86 2086 2086 HOH HOH . 
E 4 HOH A 87 2087 2087 HOH HOH . 
E 4 HOH A 88 2088 2088 HOH HOH . 
E 4 HOH A 89 2089 2089 HOH HOH . 
E 4 HOH A 90 2090 2090 HOH HOH . 
E 4 HOH A 91 2091 2091 HOH HOH . 
E 4 HOH A 92 2092 2092 HOH HOH . 
E 4 HOH A 93 2093 2093 HOH HOH . 
E 4 HOH A 94 2094 2094 HOH HOH . 
E 4 HOH A 95 2095 2095 HOH HOH . 
E 4 HOH A 96 2096 2096 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 DCP . . . C 2 39.851 44.805 62.376 1 55.43 ? N1 DCP 1589 A 1 
HETATM 2 C C2 DCP . . . C 2 39.515 46.123 62.637 1 55.15 ? C2 DCP 1589 A 1 
HETATM 3 N N3 DCP . . . C 2 40.238 47.151 62.189 1 48.85 ? N3 DCP 1589 A 1 
HETATM 4 C C4 DCP . . . C 2 41.338 46.97 61.457 1 52.11 ? C4 DCP 1589 A 1 
HETATM 5 C C5 DCP . . . C 2 41.813 45.646 61.1 1 51.45 ? C5 DCP 1589 A 1 
HETATM 6 C C6 DCP . . . C 2 41.004 44.59 61.603 1 54.93 ? C6 DCP 1589 A 1 
HETATM 7 O O2 DCP . . . C 2 38.485 46.427 63.349 1 52.37 ? O2 DCP 1589 A 1 
HETATM 8 N N4 DCP . . . C 2 41.956 48.106 61.101 1 54.83 ? N4 DCP 1589 A 1 
HETATM 9 C C1' DCP . . . C 2 38.97 43.758 62.993 1 57.85 ? C1' DCP 1589 A 1 
HETATM 10 C C2' DCP . . . C 2 38.479 42.598 62.146 1 59.82 ? C2' DCP 1589 A 1 
HETATM 11 C C3' DCP . . . C 2 38.334 41.455 63.148 1 61.76 ? C3' DCP 1589 A 1 
HETATM 12 C C4' DCP . . . C 2 39.215 41.855 64.384 1 62.06 ? C4' DCP 1589 A 1 
HETATM 13 O O4' DCP . . . C 2 39.685 43.194 64.084 1 62.53 ? O4' DCP 1589 A 1 
HETATM 14 O O3' DCP . . . C 2 36.994 41.314 63.71 1 64.35 ? O3' DCP 1589 A 1 
HETATM 15 C C5' DCP . . . C 2 40.333 40.866 64.272 1 62.31 ? C5' DCP 1589 A 1 
HETATM 16 O O5' DCP . . . C 2 41.487 41.524 63.816 1 61.41 ? O5' DCP 1589 A 1 
HETATM 17 P PA DCP . . . C 2 42.847 40.809 63.3 1 58.17 ? PA DCP 1589 A 1 
HETATM 18 O O1A DCP . . . C 2 42.493 39.32 63.026 1 60.45 ? O1A DCP 1589 A 1 
HETATM 19 O O2A DCP . . . C 2 43.788 40.979 64.497 1 59.99 ? O2A DCP 1589 A 1 
HETATM 20 O O3A DCP . . . C 2 43.551 41.532 62.029 1 58.94 ? O3A DCP 1589 A 1 
HETATM 21 P PB DCP . . . C 2 44.275 40.548 60.837 1 66.83 ? PB DCP 1589 A 1 
HETATM 22 O O1B DCP . . . C 2 44.974 41.562 59.857 1 56.36 ? O1B DCP 1589 A 1 
HETATM 23 O O2B DCP . . . C 2 43.197 39.648 60.109 1 56.93 ? O2B DCP 1589 A 1 
HETATM 24 O O3B DCP . . . C 2 45.525 39.583 61.488 1 70.04 ? O3B DCP 1589 A 1 
HETATM 25 P PG DCP . . . C 2 45.388 37.922 61.496 1 72.65 ? PG DCP 1589 A 1 
HETATM 26 O O1G DCP . . . C 2 44.136 37.586 62.358 1 70.56 ? O1G DCP 1589 A 1 
HETATM 27 O O2G DCP . . . C 2 46.711 37.424 62.15 1 77.13 ? O2G DCP 1589 A 1 
HETATM 28 O O3G DCP . . . C 2 45.183 37.35 60.026 1 73.77 ? O3G DCP 1589 A 1 
#
_model_server_stats.io_time_ms              53 
_model_server_stats.parse_time_ms           30 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           1443 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           28 
#