data_1H7A # _model_server_result.job_id bh8k8lMZuqmRpiyL9o9Vlw _model_server_result.datetime_utc '2025-03-04 21:32:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1h7a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1590}' # _entry.id 1H7A # _exptl.entry_id 1H7A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 491.182 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2'-DEOXYADENOSINE 5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1H7A _cell.length_a 98.36 _cell.length_b 98.36 _cell.length_c 244.12 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1H7A _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 98.36 98.36 122.06 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 543 A CYS 543 1_555 A SG CYS 546 A CYS 546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.984 ? disulf ? disulf2 A SG CYS 546 A CYS 546 1_555 A SG CYS 561 A CYS 561 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.89 ? disulf ? disulf3 A SG CYS 546 A CYS 546 1_555 A SG CYS 564 A CYS 564 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? disulf ? disulf4 A SG CYS 561 A CYS 561 1_555 A SG CYS 564 A CYS 564 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.903 ? metalc ? metalc1 A SG CYS 543 A CYS 543 1_555 C FE FE2 . A FE2 1591 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc2 A SG CYS 546 A CYS 546 1_555 C FE FE2 . A FE2 1591 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.77 ? metalc ? metalc3 A SG CYS 561 A CYS 561 1_555 C FE FE2 . A FE2 1591 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc4 A SG CYS 564 A CYS 564 1_555 C FE FE2 . A FE2 1591 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? metalc ? metalc5 B O2B DTP . A DTP 1590 1_555 D MG MG . A MG 1592 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc6 B O1G DTP . A DTP 1590 1_555 D MG MG . A MG 1592 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc7 B O3B DTP . A DTP 1590 1_555 D MG MG . A MG 1592 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.053 ? metalc ? metalc8 B O3A DTP . A DTP 1590 1_555 D MG MG . A MG 1592 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.855 ? metalc ? metalc9 B O1A DTP . A DTP 1590 1_555 D MG MG . A MG 1592 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc10 D MG MG . A MG 1592 1_555 E O HOH . A HOH 2057 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? # _chem_comp.formula 'C10 H16 N5 O12 P3' _chem_comp.formula_weight 491.182 _chem_comp.id DTP _chem_comp.mon_nstd_flag . _chem_comp.name "2'-DEOXYADENOSINE 5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G DTP doub 83 n n PG O2G DTP sing 84 n n PG O3G DTP sing 85 n n PG O3B DTP sing 86 n n O2G HOG2 DTP sing 87 n n O3G HOG3 DTP sing 88 n n PB O1B DTP doub 89 n n PB O2B DTP sing 90 n n PB O3B DTP sing 91 n n PB O3A DTP sing 92 n n O2B HOB2 DTP sing 93 n n PA O1A DTP doub 94 n n PA O2A DTP sing 95 n n PA O3A DTP sing 96 n n PA O5' DTP sing 97 n n O2A HOA2 DTP sing 98 n n O5' C5' DTP sing 99 n n C5' C4' DTP sing 100 n n C5' "H5'1" DTP sing 101 n n C5' "H5'2" DTP sing 102 n n C4' O4' DTP sing 103 n n C4' C3' DTP sing 104 n n C4' H4' DTP sing 105 n n O4' C1' DTP sing 106 n n C3' O3' DTP sing 107 n n C3' C2' DTP sing 108 n n C3' H3' DTP sing 109 n n O3' HO3' DTP sing 110 n n C2' C1' DTP sing 111 n n C2' "H2'1" DTP sing 112 n n C2' "H2'2" DTP sing 113 n n C1' N9 DTP sing 114 n n C1' H1' DTP sing 115 n n N9 C8 DTP sing 116 n y N9 C4 DTP sing 117 n y C8 N7 DTP doub 118 n y C8 H8 DTP sing 119 n n N7 C5 DTP sing 120 n y C5 C6 DTP sing 121 n y C5 C4 DTP doub 122 n y C6 N6 DTP sing 123 n n C6 N1 DTP doub 124 n y N6 HN61 DTP sing 125 n n N6 HN62 DTP sing 126 n n N1 C2 DTP sing 127 n y C2 N3 DTP doub 128 n y C2 H2 DTP sing 129 n n N3 C4 DTP sing 130 n y # _atom_sites.entry_id 1H7A _atom_sites.fract_transf_matrix[1][1] 0.010167 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010167 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004096 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DTP A 1 1590 1590 DTP DTP . C 3 FE2 A 1 1591 1591 FE2 FE2 . D 4 MG A 1 1592 1592 MG MG . E 5 HOH A 1 2001 2001 HOH HOH . E 5 HOH A 2 2002 2002 HOH HOH . E 5 HOH A 3 2003 2003 HOH HOH . E 5 HOH A 4 2004 2004 HOH HOH . E 5 HOH A 5 2005 2005 HOH HOH . E 5 HOH A 6 2006 2006 HOH HOH . E 5 HOH A 7 2007 2007 HOH HOH . E 5 HOH A 8 2008 2008 HOH HOH . E 5 HOH A 9 2009 2009 HOH HOH . E 5 HOH A 10 2010 2010 HOH HOH . E 5 HOH A 11 2011 2011 HOH HOH . E 5 HOH A 12 2012 2012 HOH HOH . E 5 HOH A 13 2013 2013 HOH HOH . E 5 HOH A 14 2014 2014 HOH HOH . E 5 HOH A 15 2015 2015 HOH HOH . E 5 HOH A 16 2016 2016 HOH HOH . E 5 HOH A 17 2017 2017 HOH HOH . E 5 HOH A 18 2018 2018 HOH HOH . E 5 HOH A 19 2019 2019 HOH HOH . E 5 HOH A 20 2020 2020 HOH HOH . E 5 HOH A 21 2021 2021 HOH HOH . E 5 HOH A 22 2022 2022 HOH HOH . E 5 HOH A 23 2023 2023 HOH HOH . E 5 HOH A 24 2024 2024 HOH HOH . E 5 HOH A 25 2025 2025 HOH HOH . E 5 HOH A 26 2026 2026 HOH HOH . E 5 HOH A 27 2027 2027 HOH HOH . E 5 HOH A 28 2028 2028 HOH HOH . E 5 HOH A 29 2029 2029 HOH HOH . E 5 HOH A 30 2030 2030 HOH HOH . E 5 HOH A 31 2031 2031 HOH HOH . E 5 HOH A 32 2032 2032 HOH HOH . E 5 HOH A 33 2033 2033 HOH HOH . E 5 HOH A 34 2034 2034 HOH HOH . E 5 HOH A 35 2035 2035 HOH HOH . E 5 HOH A 36 2036 2036 HOH HOH . E 5 HOH A 37 2037 2037 HOH HOH . E 5 HOH A 38 2038 2038 HOH HOH . E 5 HOH A 39 2039 2039 HOH HOH . E 5 HOH A 40 2040 2040 HOH HOH . E 5 HOH A 41 2041 2041 HOH HOH . E 5 HOH A 42 2042 2042 HOH HOH . E 5 HOH A 43 2043 2043 HOH HOH . E 5 HOH A 44 2044 2044 HOH HOH . E 5 HOH A 45 2045 2045 HOH HOH . E 5 HOH A 46 2046 2046 HOH HOH . E 5 HOH A 47 2047 2047 HOH HOH . E 5 HOH A 48 2048 2048 HOH HOH . E 5 HOH A 49 2049 2049 HOH HOH . E 5 HOH A 50 2050 2050 HOH HOH . E 5 HOH A 51 2051 2051 HOH HOH . E 5 HOH A 52 2052 2052 HOH HOH . E 5 HOH A 53 2053 2053 HOH HOH . E 5 HOH A 54 2054 2054 HOH HOH . E 5 HOH A 55 2055 2055 HOH HOH . E 5 HOH A 56 2056 2056 HOH HOH . E 5 HOH A 57 2057 2057 HOH HOH . E 5 HOH A 58 2058 2058 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG DTP . . . B 2 44.096 39.506 62.361 1 65.07 ? PG DTP 1590 A 1 HETATM 2 O O1G DTP . . . B 2 42.848 39.064 63.002 1 66.48 ? O1G DTP 1590 A 1 HETATM 3 O O2G DTP . . . B 2 45.274 39.409 63.233 1 67.3 ? O2G DTP 1590 A 1 HETATM 4 O O3G DTP . . . B 2 44.254 38.976 60.971 1 66.08 ? O3G DTP 1590 A 1 HETATM 5 P PB DTP . . . B 2 43.021 42.125 61.411 1 64.69 ? PB DTP 1590 A 1 HETATM 6 O O1B DTP . . . B 2 43.925 43.195 60.806 1 52.65 ? O1B DTP 1590 A 1 HETATM 7 O O2B DTP . . . B 2 42.176 41.294 60.532 1 60.18 ? O2B DTP 1590 A 1 HETATM 8 O O3B DTP . . . B 2 44.005 41.117 62.26 1 65.31 ? O3B DTP 1590 A 1 HETATM 9 P PA DTP . . . B 2 42.132 42.618 64.178 1 51.89 ? PA DTP 1590 A 1 HETATM 10 O O1A DTP . . . B 2 41.816 41.197 64.404 1 52.88 ? O1A DTP 1590 A 1 HETATM 11 O O2A DTP . . . B 2 43.35 43.21 64.81 1 54.75 ? O2A DTP 1590 A 1 HETATM 12 O O3A DTP . . . B 2 42.193 42.81 62.595 1 57.44 ? O3A DTP 1590 A 1 HETATM 13 O O5' DTP . . . B 2 40.883 43.372 64.624 1 48.51 ? O5' DTP 1590 A 1 HETATM 14 C C5' DTP . . . B 2 39.712 43.121 63.929 1 47.08 ? C5' DTP 1590 A 1 HETATM 15 C C4' DTP . . . B 2 38.5 43.784 64.487 1 44.44 ? C4' DTP 1590 A 1 HETATM 16 O O4' DTP . . . B 2 38.702 45.214 64.418 1 44.94 ? O4' DTP 1590 A 1 HETATM 17 C C3' DTP . . . B 2 37.328 43.495 63.623 1 42.26 ? C3' DTP 1590 A 1 HETATM 18 O O3' DTP . . . B 2 36.124 43.756 64.387 1 38.7 ? O3' DTP 1590 A 1 HETATM 19 C C2' DTP . . . B 2 37.651 44.433 62.465 1 39.06 ? C2' DTP 1590 A 1 HETATM 20 C C1' DTP . . . B 2 38.205 45.716 63.157 1 42.12 ? C1' DTP 1590 A 1 HETATM 21 N N9 DTP . . . B 2 39.37 46.414 62.508 1 41.35 ? N9 DTP 1590 A 1 HETATM 22 C C8 DTP . . . B 2 40.479 45.9 61.903 1 40.68 ? C8 DTP 1590 A 1 HETATM 23 N N7 DTP . . . B 2 41.325 46.778 61.456 1 40.61 ? N7 DTP 1590 A 1 HETATM 24 C C5 DTP . . . B 2 40.728 47.981 61.786 1 40.86 ? C5 DTP 1590 A 1 HETATM 25 C C6 DTP . . . B 2 41.112 49.361 61.593 1 40.27 ? C6 DTP 1590 A 1 HETATM 26 N N6 DTP . . . B 2 42.246 49.69 61.007 1 42.71 ? N6 DTP 1590 A 1 HETATM 27 N N1 DTP . . . B 2 40.299 50.338 62.035 1 40.31 ? N1 DTP 1590 A 1 HETATM 28 C C2 DTP . . . B 2 39.153 50.006 62.635 1 43.71 ? C2 DTP 1590 A 1 HETATM 29 N N3 DTP . . . B 2 38.67 48.76 62.882 1 44.55 ? N3 DTP 1590 A 1 HETATM 30 C C4 DTP . . . B 2 39.53 47.776 62.417 1 41.69 ? C4 DTP 1590 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 30 #