data_1H7T # _model_server_result.job_id n11OfutyZZH-AHiPiu_izQ _model_server_result.datetime_utc '2024-11-07 05:32:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1h7t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1242}' # _entry.id 1H7T # _exptl.entry_id 1H7T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 323.197 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "CYTIDINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.44 _cell.angle_gamma 90 _cell.entry_id 1H7T _cell.length_a 46 _cell.length_b 133.65 _cell.length_c 48.42 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1H7T _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id C _struct_conn.ptnr1_label_atom_id O2P _struct_conn.ptnr1_label_comp_id C5P _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id C5P _struct_conn.ptnr1_auth_seq_id 1242 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id C2 _struct_conn.ptnr2_label_comp_id SIA _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id SIA _struct_conn.ptnr2_auth_seq_id 1243 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.468 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C9 H14 N3 O8 P' _chem_comp.formula_weight 323.197 _chem_comp.id C5P _chem_comp.mon_nstd_flag . _chem_comp.name "CYTIDINE-5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3P P C5P sing 70 n n O3P HOP3 C5P sing 71 n n P O1P C5P doub 72 n n P O2P C5P sing 73 n n P O5' C5P sing 74 n n O2P HOP2 C5P sing 75 n n O5' C5' C5P sing 76 n n C5' C4' C5P sing 77 n n C5' "H5'1" C5P sing 78 n n C5' "H5'2" C5P sing 79 n n C4' O4' C5P sing 80 n n C4' C3' C5P sing 81 n n C4' H4' C5P sing 82 n n O4' C1' C5P sing 83 n n C3' O3' C5P sing 84 n n C3' C2' C5P sing 85 n n C3' H3' C5P sing 86 n n O3' HO3' C5P sing 87 n n C2' O2' C5P sing 88 n n C2' C1' C5P sing 89 n n C2' "H2'1" C5P sing 90 n n O2' HO2' C5P sing 91 n n C1' N1 C5P sing 92 n n C1' H1' C5P sing 93 n n N1 C2 C5P sing 94 n n N1 C6 C5P sing 95 n n C2 N3 C5P sing 96 n n C2 O2 C5P doub 97 n n N3 C4 C5P doub 98 n n C4 C5 C5P sing 99 n n C4 N4 C5P sing 100 n n C5 C6 C5P doub 101 n n C5 H5 C5P sing 102 n n C6 H6 C5P sing 103 n n N4 HN41 C5P sing 104 n n N4 HN42 C5P sing 105 n n # _atom_sites.entry_id 1H7T _atom_sites.fract_transf_matrix[1][1] 0.021739 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004795 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007482 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021149 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 C5P B 1 1242 1242 C5P C5P . D 3 SIA B 1 1243 1243 SIA SIA . E 4 HOH A 1 2001 2001 HOH HOH . E 4 HOH A 2 2002 2002 HOH HOH . E 4 HOH A 3 2003 2003 HOH HOH . E 4 HOH A 4 2004 2004 HOH HOH . E 4 HOH A 5 2005 2005 HOH HOH . E 4 HOH A 6 2006 2006 HOH HOH . E 4 HOH A 7 2007 2007 HOH HOH . E 4 HOH A 8 2008 2008 HOH HOH . E 4 HOH A 9 2009 2009 HOH HOH . E 4 HOH A 10 2010 2010 HOH HOH . E 4 HOH A 11 2011 2011 HOH HOH . E 4 HOH A 12 2012 2012 HOH HOH . E 4 HOH A 13 2013 2013 HOH HOH . E 4 HOH A 14 2014 2014 HOH HOH . E 4 HOH A 15 2015 2015 HOH HOH . E 4 HOH A 16 2016 2016 HOH HOH . E 4 HOH A 17 2017 2017 HOH HOH . E 4 HOH A 18 2018 2018 HOH HOH . E 4 HOH A 19 2019 2019 HOH HOH . E 4 HOH A 20 2020 2020 HOH HOH . E 4 HOH A 21 2021 2021 HOH HOH . E 4 HOH A 22 2022 2022 HOH HOH . E 4 HOH A 23 2023 2023 HOH HOH . E 4 HOH A 24 2024 2024 HOH HOH . E 4 HOH A 25 2025 2025 HOH HOH . E 4 HOH A 26 2026 2026 HOH HOH . E 4 HOH A 27 2027 2027 HOH HOH . E 4 HOH A 28 2028 2028 HOH HOH . E 4 HOH A 29 2029 2029 HOH HOH . E 4 HOH A 30 2030 2030 HOH HOH . E 4 HOH A 31 2031 2031 HOH HOH . E 4 HOH A 32 2032 2032 HOH HOH . E 4 HOH A 33 2033 2033 HOH HOH . E 4 HOH A 34 2034 2034 HOH HOH . E 4 HOH A 35 2035 2035 HOH HOH . E 4 HOH A 36 2036 2036 HOH HOH . E 4 HOH A 37 2037 2037 HOH HOH . E 4 HOH A 38 2038 2038 HOH HOH . E 4 HOH A 39 2039 2039 HOH HOH . E 4 HOH A 40 2040 2040 HOH HOH . E 4 HOH A 41 2041 2041 HOH HOH . E 4 HOH A 42 2042 2042 HOH HOH . E 4 HOH A 43 2043 2043 HOH HOH . E 4 HOH A 44 2044 2044 HOH HOH . E 4 HOH A 45 2045 2045 HOH HOH . E 4 HOH A 46 2046 2046 HOH HOH . E 4 HOH A 47 2047 2047 HOH HOH . E 4 HOH A 48 2048 2048 HOH HOH . E 4 HOH A 49 2049 2049 HOH HOH . E 4 HOH A 50 2050 2050 HOH HOH . E 4 HOH A 51 2051 2051 HOH HOH . E 4 HOH A 52 2052 2052 HOH HOH . E 4 HOH A 53 2053 2053 HOH HOH . E 4 HOH A 54 2054 2054 HOH HOH . E 4 HOH A 55 2055 2055 HOH HOH . E 4 HOH A 56 2056 2056 HOH HOH . E 4 HOH A 57 2057 2057 HOH HOH . E 4 HOH A 58 2058 2058 HOH HOH . E 4 HOH A 59 2059 2059 HOH HOH . E 4 HOH A 60 2060 2060 HOH HOH . E 4 HOH A 61 2061 2061 HOH HOH . E 4 HOH A 62 2062 2062 HOH HOH . E 4 HOH A 63 2063 2063 HOH HOH . E 4 HOH A 64 2064 2064 HOH HOH . E 4 HOH A 65 2065 2065 HOH HOH . E 4 HOH A 66 2066 2066 HOH HOH . E 4 HOH A 67 2067 2067 HOH HOH . E 4 HOH A 68 2068 2068 HOH HOH . E 4 HOH A 69 2069 2069 HOH HOH . E 4 HOH A 70 2070 2070 HOH HOH . E 4 HOH A 71 2071 2071 HOH HOH . E 4 HOH A 72 2072 2072 HOH HOH . E 4 HOH A 73 2073 2073 HOH HOH . E 4 HOH A 74 2074 2074 HOH HOH . E 4 HOH A 75 2075 2075 HOH HOH . E 4 HOH A 76 2076 2076 HOH HOH . E 4 HOH A 77 2077 2077 HOH HOH . E 4 HOH A 78 2078 2078 HOH HOH . E 4 HOH A 79 2079 2079 HOH HOH . E 4 HOH A 80 2080 2080 HOH HOH . E 4 HOH A 81 2081 2081 HOH HOH . E 4 HOH A 82 2082 2082 HOH HOH . E 4 HOH A 83 2083 2083 HOH HOH . E 4 HOH A 84 2084 2084 HOH HOH . E 4 HOH A 85 2085 2085 HOH HOH . E 4 HOH A 86 2086 2086 HOH HOH . F 4 HOH B 1 2001 2001 HOH HOH . F 4 HOH B 2 2002 2002 HOH HOH . F 4 HOH B 3 2003 2003 HOH HOH . F 4 HOH B 4 2004 2004 HOH HOH . F 4 HOH B 5 2005 2005 HOH HOH . F 4 HOH B 6 2006 2006 HOH HOH . F 4 HOH B 7 2007 2007 HOH HOH . F 4 HOH B 8 2008 2008 HOH HOH . F 4 HOH B 9 2009 2009 HOH HOH . F 4 HOH B 10 2010 2010 HOH HOH . F 4 HOH B 11 2011 2011 HOH HOH . F 4 HOH B 12 2012 2012 HOH HOH . F 4 HOH B 13 2013 2013 HOH HOH . F 4 HOH B 14 2014 2014 HOH HOH . F 4 HOH B 15 2015 2015 HOH HOH . F 4 HOH B 16 2016 2016 HOH HOH . F 4 HOH B 17 2017 2017 HOH HOH . F 4 HOH B 18 2018 2018 HOH HOH . F 4 HOH B 19 2019 2019 HOH HOH . F 4 HOH B 20 2020 2020 HOH HOH . F 4 HOH B 21 2021 2021 HOH HOH . F 4 HOH B 22 2022 2022 HOH HOH . F 4 HOH B 23 2023 2023 HOH HOH . F 4 HOH B 24 2024 2024 HOH HOH . F 4 HOH B 25 2025 2025 HOH HOH . F 4 HOH B 26 2026 2026 HOH HOH . F 4 HOH B 27 2027 2027 HOH HOH . F 4 HOH B 28 2028 2028 HOH HOH . F 4 HOH B 29 2029 2029 HOH HOH . F 4 HOH B 30 2030 2030 HOH HOH . F 4 HOH B 31 2031 2031 HOH HOH . F 4 HOH B 32 2032 2032 HOH HOH . F 4 HOH B 33 2033 2033 HOH HOH . F 4 HOH B 34 2034 2034 HOH HOH . F 4 HOH B 35 2035 2035 HOH HOH . F 4 HOH B 36 2036 2036 HOH HOH . F 4 HOH B 37 2037 2037 HOH HOH . F 4 HOH B 38 2038 2038 HOH HOH . F 4 HOH B 39 2039 2039 HOH HOH . F 4 HOH B 40 2040 2040 HOH HOH . F 4 HOH B 41 2041 2041 HOH HOH . F 4 HOH B 42 2042 2042 HOH HOH . F 4 HOH B 43 2043 2043 HOH HOH . F 4 HOH B 44 2044 2044 HOH HOH . F 4 HOH B 45 2045 2045 HOH HOH . F 4 HOH B 46 2046 2046 HOH HOH . F 4 HOH B 47 2047 2047 HOH HOH . F 4 HOH B 48 2048 2048 HOH HOH . F 4 HOH B 49 2049 2049 HOH HOH . F 4 HOH B 50 2050 2050 HOH HOH . F 4 HOH B 51 2051 2051 HOH HOH . F 4 HOH B 52 2052 2052 HOH HOH . F 4 HOH B 53 2053 2053 HOH HOH . F 4 HOH B 54 2054 2054 HOH HOH . F 4 HOH B 55 2055 2055 HOH HOH . F 4 HOH B 56 2056 2056 HOH HOH . F 4 HOH B 57 2057 2057 HOH HOH . F 4 HOH B 58 2058 2058 HOH HOH . F 4 HOH B 59 2059 2059 HOH HOH . F 4 HOH B 60 2060 2060 HOH HOH . F 4 HOH B 61 2061 2061 HOH HOH . F 4 HOH B 62 2062 2062 HOH HOH . F 4 HOH B 63 2063 2063 HOH HOH . F 4 HOH B 64 2064 2064 HOH HOH . F 4 HOH B 65 2065 2065 HOH HOH . F 4 HOH B 66 2066 2066 HOH HOH . F 4 HOH B 67 2067 2067 HOH HOH . F 4 HOH B 68 2068 2068 HOH HOH . F 4 HOH B 69 2069 2069 HOH HOH . F 4 HOH B 70 2070 2070 HOH HOH . F 4 HOH B 71 2071 2071 HOH HOH . F 4 HOH B 72 2072 2072 HOH HOH . F 4 HOH B 73 2073 2073 HOH HOH . F 4 HOH B 74 2074 2074 HOH HOH . F 4 HOH B 75 2075 2075 HOH HOH . F 4 HOH B 76 2076 2076 HOH HOH . F 4 HOH B 77 2077 2077 HOH HOH . F 4 HOH B 78 2078 2078 HOH HOH . F 4 HOH B 79 2079 2079 HOH HOH . F 4 HOH B 80 2080 2080 HOH HOH . F 4 HOH B 81 2081 2081 HOH HOH . F 4 HOH B 82 2082 2082 HOH HOH . F 4 HOH B 83 2083 2083 HOH HOH . F 4 HOH B 84 2084 2084 HOH HOH . F 4 HOH B 85 2085 2085 HOH HOH . F 4 HOH B 86 2086 2086 HOH HOH . F 4 HOH B 87 2087 2087 HOH HOH . F 4 HOH B 88 2088 2088 HOH HOH . F 4 HOH B 89 2089 2089 HOH HOH . F 4 HOH B 90 2090 2090 HOH HOH . F 4 HOH B 91 2091 2091 HOH HOH . F 4 HOH B 92 2092 2092 HOH HOH . F 4 HOH B 93 2093 2093 HOH HOH . F 4 HOH B 94 2094 2094 HOH HOH . F 4 HOH B 95 2095 2095 HOH HOH . F 4 HOH B 96 2096 2096 HOH HOH . F 4 HOH B 97 2097 2097 HOH HOH . F 4 HOH B 98 2098 2098 HOH HOH . F 4 HOH B 99 2099 2099 HOH HOH . F 4 HOH B 100 2100 2100 HOH HOH . F 4 HOH B 101 2101 2101 HOH HOH . F 4 HOH B 102 2102 2102 HOH HOH . F 4 HOH B 103 2103 2103 HOH HOH . F 4 HOH B 104 2104 2104 HOH HOH . F 4 HOH B 105 2105 2105 HOH HOH . F 4 HOH B 106 2106 2106 HOH HOH . F 4 HOH B 107 2107 2107 HOH HOH . F 4 HOH B 108 2108 2108 HOH HOH . F 4 HOH B 109 2109 2109 HOH HOH . F 4 HOH B 110 2110 2110 HOH HOH . F 4 HOH B 111 2111 2111 HOH HOH . F 4 HOH B 112 2112 2112 HOH HOH . F 4 HOH B 113 2113 2113 HOH HOH . F 4 HOH B 114 2114 2114 HOH HOH . F 4 HOH B 115 2115 2115 HOH HOH . F 4 HOH B 116 2116 2116 HOH HOH . F 4 HOH B 117 2117 2117 HOH HOH . F 4 HOH B 118 2118 2118 HOH HOH . F 4 HOH B 119 2119 2119 HOH HOH . F 4 HOH B 120 2120 2120 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3P C5P . . . C 2 39.458 47.696 54.741 1 68.56 ? O3P C5P 1242 B 1 HETATM 2 P P C5P . . . C 2 38.777 48.956 55.181 1 68.73 ? P C5P 1242 B 1 HETATM 3 O O1P C5P . . . C 2 38.367 48.814 56.616 1 68.62 ? O1P C5P 1242 B 1 HETATM 4 O O2P C5P . . . C 2 37.471 49.207 54.241 1 71.41 ? O2P C5P 1242 B 1 HETATM 5 O O5' C5P . . . C 2 39.739 50.243 55.041 1 66.48 ? O5' C5P 1242 B 1 HETATM 6 C C5' C5P . . . C 2 39.881 51.143 53.922 1 62.53 ? C5' C5P 1242 B 1 HETATM 7 C C4' C5P . . . C 2 41.094 50.862 52.986 1 59.92 ? C4' C5P 1242 B 1 HETATM 8 O O4' C5P . . . C 2 42.313 51.174 53.69 1 58.61 ? O4' C5P 1242 B 1 HETATM 9 C C3' C5P . . . C 2 41.204 49.402 52.495 1 58.75 ? C3' C5P 1242 B 1 HETATM 10 O O3' C5P . . . C 2 41.508 49.401 51.08 1 58.75 ? O3' C5P 1242 B 1 HETATM 11 C C2' C5P . . . C 2 42.362 48.819 53.338 1 57.91 ? C2' C5P 1242 B 1 HETATM 12 O O2' C5P . . . C 2 43.19 47.864 52.653 1 57.43 ? O2' C5P 1242 B 1 HETATM 13 C C1' C5P . . . C 2 43.207 50.042 53.775 1 57.2 ? C1' C5P 1242 B 1 HETATM 14 N N1 C5P . . . C 2 43.762 49.87 55.123 1 55.85 ? N1 C5P 1242 B 1 HETATM 15 C C2 C5P . . . C 2 45.108 49.901 55.325 1 54.93 ? C2 C5P 1242 B 1 HETATM 16 N N3 C5P . . . C 2 45.642 49.727 56.664 1 54.48 ? N3 C5P 1242 B 1 HETATM 17 C C4 C5P . . . C 2 44.88 49.543 57.683 1 54.26 ? C4 C5P 1242 B 1 HETATM 18 C C5 C5P . . . C 2 43.409 49.517 57.433 1 54.25 ? C5 C5P 1242 B 1 HETATM 19 C C6 C5P . . . C 2 42.92 49.679 56.192 1 54.87 ? C6 C5P 1242 B 1 HETATM 20 O O2 C5P . . . C 2 45.917 50.07 54.42 1 54.34 ? O2 C5P 1242 B 1 HETATM 21 N N4 C5P . . . C 2 45.358 49.383 58.887 1 54.19 ? N4 C5P 1242 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 21 #