data_1H7T # _model_server_result.job_id yoScXR1Y2EIgiizDD5LoEA _model_server_result.datetime_utc '2025-02-17 15:58:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1h7t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1243}' # _entry.id 1H7T # _exptl.entry_id 1H7T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 309.27 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'N-acetyl-alpha-neuraminic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.44 _cell.angle_gamma 90 _cell.entry_id 1H7T _cell.length_a 46 _cell.length_b 133.65 _cell.length_c 48.42 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1H7T _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id C _struct_conn.ptnr1_label_atom_id O2P _struct_conn.ptnr1_label_comp_id C5P _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id C5P _struct_conn.ptnr1_auth_seq_id 1242 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id C2 _struct_conn.ptnr2_label_comp_id SIA _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id SIA _struct_conn.ptnr2_auth_seq_id 1243 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.468 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C11 H19 N O9' _chem_comp.formula_weight 309.27 _chem_comp.id SIA _chem_comp.mon_nstd_flag . _chem_comp.name 'N-acetyl-alpha-neuraminic acid' _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms 'N-acetylneuraminic acid;sialic acid;alpha-sialic acid;O-SIALIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 SIA sing 326 n n C1 O1A SIA doub 327 n n C1 O1B SIA sing 328 n n C2 C3 SIA sing 329 n n C2 O2 SIA sing 330 n n C2 O6 SIA sing 331 n n C3 C4 SIA sing 332 n n C3 H32 SIA sing 333 n n C3 H31 SIA sing 334 n n C4 C5 SIA sing 335 n n C4 O4 SIA sing 336 n n C4 H4 SIA sing 337 n n C5 C6 SIA sing 338 n n C5 N5 SIA sing 339 n n C5 H5 SIA sing 340 n n C6 C7 SIA sing 341 n n C6 O6 SIA sing 342 n n C6 H6 SIA sing 343 n n C7 C8 SIA sing 344 n n C7 O7 SIA sing 345 n n C7 H7 SIA sing 346 n n C8 C9 SIA sing 347 n n C8 O8 SIA sing 348 n n C8 H8 SIA sing 349 n n C9 O9 SIA sing 350 n n C9 H92 SIA sing 351 n n C9 H91 SIA sing 352 n n C10 C11 SIA sing 353 n n C10 N5 SIA sing 354 n n C10 O10 SIA doub 355 n n C11 H111 SIA sing 356 n n C11 H113 SIA sing 357 n n C11 H112 SIA sing 358 n n N5 HN5 SIA sing 359 n n O1B HO1B SIA sing 360 n n O2 HO2 SIA sing 361 n n O4 HO4 SIA sing 362 n n O7 HO7 SIA sing 363 n n O8 HO8 SIA sing 364 n n O9 HO9 SIA sing 365 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version SIA DNeup5Aca 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 SIA 'N-acetyl-a-D-neuraminic acid' 'COMMON NAME' GMML 1 SIA a-D-Neup5Ac 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 SIA Neu5Ac 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1H7T _atom_sites.fract_transf_matrix[1][1] 0.021739 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004795 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007482 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021149 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 C5P B 1 1242 1242 C5P C5P . D 3 SIA B 1 1243 1243 SIA SIA . E 4 HOH A 1 2001 2001 HOH HOH . E 4 HOH A 2 2002 2002 HOH HOH . E 4 HOH A 3 2003 2003 HOH HOH . E 4 HOH A 4 2004 2004 HOH HOH . E 4 HOH A 5 2005 2005 HOH HOH . E 4 HOH A 6 2006 2006 HOH HOH . E 4 HOH A 7 2007 2007 HOH HOH . E 4 HOH A 8 2008 2008 HOH HOH . E 4 HOH A 9 2009 2009 HOH HOH . E 4 HOH A 10 2010 2010 HOH HOH . E 4 HOH A 11 2011 2011 HOH HOH . E 4 HOH A 12 2012 2012 HOH HOH . E 4 HOH A 13 2013 2013 HOH HOH . E 4 HOH A 14 2014 2014 HOH HOH . E 4 HOH A 15 2015 2015 HOH HOH . E 4 HOH A 16 2016 2016 HOH HOH . E 4 HOH A 17 2017 2017 HOH HOH . E 4 HOH A 18 2018 2018 HOH HOH . E 4 HOH A 19 2019 2019 HOH HOH . E 4 HOH A 20 2020 2020 HOH HOH . E 4 HOH A 21 2021 2021 HOH HOH . E 4 HOH A 22 2022 2022 HOH HOH . E 4 HOH A 23 2023 2023 HOH HOH . E 4 HOH A 24 2024 2024 HOH HOH . E 4 HOH A 25 2025 2025 HOH HOH . E 4 HOH A 26 2026 2026 HOH HOH . E 4 HOH A 27 2027 2027 HOH HOH . E 4 HOH A 28 2028 2028 HOH HOH . E 4 HOH A 29 2029 2029 HOH HOH . E 4 HOH A 30 2030 2030 HOH HOH . E 4 HOH A 31 2031 2031 HOH HOH . E 4 HOH A 32 2032 2032 HOH HOH . E 4 HOH A 33 2033 2033 HOH HOH . E 4 HOH A 34 2034 2034 HOH HOH . E 4 HOH A 35 2035 2035 HOH HOH . E 4 HOH A 36 2036 2036 HOH HOH . E 4 HOH A 37 2037 2037 HOH HOH . E 4 HOH A 38 2038 2038 HOH HOH . E 4 HOH A 39 2039 2039 HOH HOH . E 4 HOH A 40 2040 2040 HOH HOH . E 4 HOH A 41 2041 2041 HOH HOH . E 4 HOH A 42 2042 2042 HOH HOH . E 4 HOH A 43 2043 2043 HOH HOH . E 4 HOH A 44 2044 2044 HOH HOH . E 4 HOH A 45 2045 2045 HOH HOH . E 4 HOH A 46 2046 2046 HOH HOH . E 4 HOH A 47 2047 2047 HOH HOH . E 4 HOH A 48 2048 2048 HOH HOH . E 4 HOH A 49 2049 2049 HOH HOH . E 4 HOH A 50 2050 2050 HOH HOH . E 4 HOH A 51 2051 2051 HOH HOH . E 4 HOH A 52 2052 2052 HOH HOH . E 4 HOH A 53 2053 2053 HOH HOH . E 4 HOH A 54 2054 2054 HOH HOH . E 4 HOH A 55 2055 2055 HOH HOH . E 4 HOH A 56 2056 2056 HOH HOH . E 4 HOH A 57 2057 2057 HOH HOH . E 4 HOH A 58 2058 2058 HOH HOH . E 4 HOH A 59 2059 2059 HOH HOH . E 4 HOH A 60 2060 2060 HOH HOH . E 4 HOH A 61 2061 2061 HOH HOH . E 4 HOH A 62 2062 2062 HOH HOH . E 4 HOH A 63 2063 2063 HOH HOH . E 4 HOH A 64 2064 2064 HOH HOH . E 4 HOH A 65 2065 2065 HOH HOH . E 4 HOH A 66 2066 2066 HOH HOH . E 4 HOH A 67 2067 2067 HOH HOH . E 4 HOH A 68 2068 2068 HOH HOH . E 4 HOH A 69 2069 2069 HOH HOH . E 4 HOH A 70 2070 2070 HOH HOH . E 4 HOH A 71 2071 2071 HOH HOH . E 4 HOH A 72 2072 2072 HOH HOH . E 4 HOH A 73 2073 2073 HOH HOH . E 4 HOH A 74 2074 2074 HOH HOH . E 4 HOH A 75 2075 2075 HOH HOH . E 4 HOH A 76 2076 2076 HOH HOH . E 4 HOH A 77 2077 2077 HOH HOH . E 4 HOH A 78 2078 2078 HOH HOH . E 4 HOH A 79 2079 2079 HOH HOH . E 4 HOH A 80 2080 2080 HOH HOH . E 4 HOH A 81 2081 2081 HOH HOH . E 4 HOH A 82 2082 2082 HOH HOH . E 4 HOH A 83 2083 2083 HOH HOH . E 4 HOH A 84 2084 2084 HOH HOH . E 4 HOH A 85 2085 2085 HOH HOH . E 4 HOH A 86 2086 2086 HOH HOH . F 4 HOH B 1 2001 2001 HOH HOH . F 4 HOH B 2 2002 2002 HOH HOH . F 4 HOH B 3 2003 2003 HOH HOH . F 4 HOH B 4 2004 2004 HOH HOH . F 4 HOH B 5 2005 2005 HOH HOH . F 4 HOH B 6 2006 2006 HOH HOH . F 4 HOH B 7 2007 2007 HOH HOH . F 4 HOH B 8 2008 2008 HOH HOH . F 4 HOH B 9 2009 2009 HOH HOH . F 4 HOH B 10 2010 2010 HOH HOH . F 4 HOH B 11 2011 2011 HOH HOH . F 4 HOH B 12 2012 2012 HOH HOH . F 4 HOH B 13 2013 2013 HOH HOH . F 4 HOH B 14 2014 2014 HOH HOH . F 4 HOH B 15 2015 2015 HOH HOH . F 4 HOH B 16 2016 2016 HOH HOH . F 4 HOH B 17 2017 2017 HOH HOH . F 4 HOH B 18 2018 2018 HOH HOH . F 4 HOH B 19 2019 2019 HOH HOH . F 4 HOH B 20 2020 2020 HOH HOH . F 4 HOH B 21 2021 2021 HOH HOH . F 4 HOH B 22 2022 2022 HOH HOH . F 4 HOH B 23 2023 2023 HOH HOH . F 4 HOH B 24 2024 2024 HOH HOH . F 4 HOH B 25 2025 2025 HOH HOH . F 4 HOH B 26 2026 2026 HOH HOH . F 4 HOH B 27 2027 2027 HOH HOH . F 4 HOH B 28 2028 2028 HOH HOH . F 4 HOH B 29 2029 2029 HOH HOH . F 4 HOH B 30 2030 2030 HOH HOH . F 4 HOH B 31 2031 2031 HOH HOH . F 4 HOH B 32 2032 2032 HOH HOH . F 4 HOH B 33 2033 2033 HOH HOH . F 4 HOH B 34 2034 2034 HOH HOH . F 4 HOH B 35 2035 2035 HOH HOH . F 4 HOH B 36 2036 2036 HOH HOH . F 4 HOH B 37 2037 2037 HOH HOH . F 4 HOH B 38 2038 2038 HOH HOH . F 4 HOH B 39 2039 2039 HOH HOH . F 4 HOH B 40 2040 2040 HOH HOH . F 4 HOH B 41 2041 2041 HOH HOH . F 4 HOH B 42 2042 2042 HOH HOH . F 4 HOH B 43 2043 2043 HOH HOH . F 4 HOH B 44 2044 2044 HOH HOH . F 4 HOH B 45 2045 2045 HOH HOH . F 4 HOH B 46 2046 2046 HOH HOH . F 4 HOH B 47 2047 2047 HOH HOH . F 4 HOH B 48 2048 2048 HOH HOH . F 4 HOH B 49 2049 2049 HOH HOH . F 4 HOH B 50 2050 2050 HOH HOH . F 4 HOH B 51 2051 2051 HOH HOH . F 4 HOH B 52 2052 2052 HOH HOH . F 4 HOH B 53 2053 2053 HOH HOH . F 4 HOH B 54 2054 2054 HOH HOH . F 4 HOH B 55 2055 2055 HOH HOH . F 4 HOH B 56 2056 2056 HOH HOH . F 4 HOH B 57 2057 2057 HOH HOH . F 4 HOH B 58 2058 2058 HOH HOH . F 4 HOH B 59 2059 2059 HOH HOH . F 4 HOH B 60 2060 2060 HOH HOH . F 4 HOH B 61 2061 2061 HOH HOH . F 4 HOH B 62 2062 2062 HOH HOH . F 4 HOH B 63 2063 2063 HOH HOH . F 4 HOH B 64 2064 2064 HOH HOH . F 4 HOH B 65 2065 2065 HOH HOH . F 4 HOH B 66 2066 2066 HOH HOH . F 4 HOH B 67 2067 2067 HOH HOH . F 4 HOH B 68 2068 2068 HOH HOH . F 4 HOH B 69 2069 2069 HOH HOH . F 4 HOH B 70 2070 2070 HOH HOH . F 4 HOH B 71 2071 2071 HOH HOH . F 4 HOH B 72 2072 2072 HOH HOH . F 4 HOH B 73 2073 2073 HOH HOH . F 4 HOH B 74 2074 2074 HOH HOH . F 4 HOH B 75 2075 2075 HOH HOH . F 4 HOH B 76 2076 2076 HOH HOH . F 4 HOH B 77 2077 2077 HOH HOH . F 4 HOH B 78 2078 2078 HOH HOH . F 4 HOH B 79 2079 2079 HOH HOH . F 4 HOH B 80 2080 2080 HOH HOH . F 4 HOH B 81 2081 2081 HOH HOH . F 4 HOH B 82 2082 2082 HOH HOH . F 4 HOH B 83 2083 2083 HOH HOH . F 4 HOH B 84 2084 2084 HOH HOH . F 4 HOH B 85 2085 2085 HOH HOH . F 4 HOH B 86 2086 2086 HOH HOH . F 4 HOH B 87 2087 2087 HOH HOH . F 4 HOH B 88 2088 2088 HOH HOH . F 4 HOH B 89 2089 2089 HOH HOH . F 4 HOH B 90 2090 2090 HOH HOH . F 4 HOH B 91 2091 2091 HOH HOH . F 4 HOH B 92 2092 2092 HOH HOH . F 4 HOH B 93 2093 2093 HOH HOH . F 4 HOH B 94 2094 2094 HOH HOH . F 4 HOH B 95 2095 2095 HOH HOH . F 4 HOH B 96 2096 2096 HOH HOH . F 4 HOH B 97 2097 2097 HOH HOH . F 4 HOH B 98 2098 2098 HOH HOH . F 4 HOH B 99 2099 2099 HOH HOH . F 4 HOH B 100 2100 2100 HOH HOH . F 4 HOH B 101 2101 2101 HOH HOH . F 4 HOH B 102 2102 2102 HOH HOH . F 4 HOH B 103 2103 2103 HOH HOH . F 4 HOH B 104 2104 2104 HOH HOH . F 4 HOH B 105 2105 2105 HOH HOH . F 4 HOH B 106 2106 2106 HOH HOH . F 4 HOH B 107 2107 2107 HOH HOH . F 4 HOH B 108 2108 2108 HOH HOH . F 4 HOH B 109 2109 2109 HOH HOH . F 4 HOH B 110 2110 2110 HOH HOH . F 4 HOH B 111 2111 2111 HOH HOH . F 4 HOH B 112 2112 2112 HOH HOH . F 4 HOH B 113 2113 2113 HOH HOH . F 4 HOH B 114 2114 2114 HOH HOH . F 4 HOH B 115 2115 2115 HOH HOH . F 4 HOH B 116 2116 2116 HOH HOH . F 4 HOH B 117 2117 2117 HOH HOH . F 4 HOH B 118 2118 2118 HOH HOH . F 4 HOH B 119 2119 2119 HOH HOH . F 4 HOH B 120 2120 2120 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SIA . . . D 3 35.433 48.596 55.346 1 74.23 ? C1 SIA 1243 B 1 HETATM 2 C C2 SIA . . . D 3 36.092 49.647 54.488 1 73.82 ? C2 SIA 1243 B 1 HETATM 3 C C3 SIA . . . D 3 36.026 51.065 55.162 1 74.91 ? C3 SIA 1243 B 1 HETATM 4 C C4 SIA . . . D 3 36.68 52.104 54.204 1 75.84 ? C4 SIA 1243 B 1 HETATM 5 C C5 SIA . . . D 3 35.817 52.081 52.912 1 76.03 ? C5 SIA 1243 B 1 HETATM 6 C C6 SIA . . . D 3 35.894 50.652 52.275 1 75.49 ? C6 SIA 1243 B 1 HETATM 7 C C7 SIA . . . D 3 35.048 50.513 50.974 1 75.69 ? C7 SIA 1243 B 1 HETATM 8 C C8 SIA . . . D 3 33.532 50.735 51.303 1 75.87 ? C8 SIA 1243 B 1 HETATM 9 C C9 SIA . . . D 3 32.732 51.459 50.182 1 75.95 ? C9 SIA 1243 B 1 HETATM 10 C C10 SIA . . . D 3 35.481 54.086 51.491 1 76.82 ? C10 SIA 1243 B 1 HETATM 11 C C11 SIA . . . D 3 36.058 55.061 50.512 1 76.67 ? C11 SIA 1243 B 1 HETATM 12 N N5 SIA . . . D 3 36.308 53.092 51.959 1 76.49 ? N5 SIA 1243 B 1 HETATM 13 O O1A SIA . . . D 3 34.13 48.767 55.565 1 74.34 ? O1A SIA 1243 B 1 HETATM 14 O O1B SIA . . . D 3 36.032 47.626 55.801 1 74.61 ? O1B SIA 1243 B 1 HETATM 15 O O4 SIA . . . D 3 36.634 53.414 54.819 1 76.49 ? O4 SIA 1243 B 1 HETATM 16 O O6 SIA . . . D 3 35.395 49.667 53.214 1 74.64 ? O6 SIA 1243 B 1 HETATM 17 O O7 SIA . . . D 3 35.569 51.479 50.033 1 76.05 ? O7 SIA 1243 B 1 HETATM 18 O O8 SIA . . . D 3 32.936 49.442 51.535 1 75.97 ? O8 SIA 1243 B 1 HETATM 19 O O9 SIA . . . D 3 31.499 51.983 50.703 1 75.97 ? O9 SIA 1243 B 1 HETATM 20 O O10 SIA . . . D 3 34.299 54.211 51.823 1 76.73 ? O10 SIA 1243 B 1 # _model_server_stats.io_time_ms 89 _model_server_stats.parse_time_ms 139 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 20 #