data_1H7U
#
_model_server_result.job_id            K4Dy4EuzuduXrkSFgbjYzA 
_model_server_result.datetime_utc      '2025-03-03 03:15:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1h7u 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1366}' 
#
_entry.id    1H7U 
#
_exptl.entry_id    1H7U 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              523.247 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1H7U 
_cell.length_a            74.357 
_cell.length_b            73.868 
_cell.length_c            136.12 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1H7U 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS monomeric 1 author_and_software_defined_assembly 1 
PQS monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 45 A ASN 45 1_555 C MG MG . A MG 1365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? 
metalc ? metalc2 C MG MG . A MG 1365 1_555 D O3B AGS . A AGS 1366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? 
metalc ? metalc3 C MG MG . A MG 1365 1_555 D O3G AGS . A AGS 1366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? 
metalc ? metalc4 C MG MG . A MG 1365 1_555 D O1A AGS . A AGS 1366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? 
metalc ? metalc5 B OD1 ASN 45 B ASN 45 1_555 E MG MG . B MG 1365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.716 ? 
metalc ? metalc6 E MG MG . B MG 1365 1_555 F O3G AGS . B AGS 1366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? 
metalc ? metalc7 E MG MG . B MG 1365 1_555 F O3B AGS . B AGS 1366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.808 ? 
#
_chem_comp.formula           'C10 H16 N5 O12 P3 S' 
_chem_comp.formula_weight    523.247 
_chem_comp.id                AGS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "ATP-GAMMA-S;ADENOSINE 5'-(3-THIOTRIPHOSPHATE);ADENOSINE 5'-(GAMMA-THIOTRIPHOSPHATE);ADENOSINE-5'-DIPHOSPHATE MONOTHIOPHOSPHATE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG S1G AGS doub 1 n n 
PG O2G AGS sing 2 n n 
PG O3G AGS sing 3 n n 
PG O3B AGS sing 4 n n 
PB O1B AGS doub 5 n n 
PB O2B AGS sing 6 n n 
PB O3B AGS sing 7 n n 
PB O3A AGS sing 8 n n 
PA O1A AGS doub 9 n n 
PA O2A AGS sing 10 n n 
PA O3A AGS sing 11 n n 
PA O5' AGS sing 12 n n 
O5' C5' AGS sing 13 n n 
C5' C4' AGS sing 14 n n 
C4' O4' AGS sing 15 n n 
C4' C3' AGS sing 16 n n 
O4' C1' AGS sing 17 n n 
C3' O3' AGS sing 18 n n 
C3' C2' AGS sing 19 n n 
C2' O2' AGS sing 20 n n 
C2' C1' AGS sing 21 n n 
C1' N9 AGS sing 22 n n 
N9 C8 AGS sing 23 n y 
N9 C4 AGS sing 24 n y 
C8 N7 AGS doub 25 n y 
N7 C5 AGS sing 26 n y 
C5 C6 AGS sing 27 n y 
C5 C4 AGS doub 28 n y 
C6 N6 AGS sing 29 n n 
C6 N1 AGS doub 30 n y 
N1 C2 AGS sing 31 n y 
C2 N3 AGS doub 32 n y 
N3 C4 AGS sing 33 n y 
O2G HOG2 AGS sing 34 n n 
O3G H21 AGS sing 35 n n 
O2B HOB2 AGS sing 36 n n 
O2A HOA2 AGS sing 37 n n 
C5' "H5'1" AGS sing 38 n n 
C5' "H5'2" AGS sing 39 n n 
C4' H4' AGS sing 40 n n 
C3' H3' AGS sing 41 n n 
O3' HO3' AGS sing 42 n n 
C2' H2' AGS sing 43 n n 
O2' HO2' AGS sing 44 n n 
C1' H1' AGS sing 45 n n 
C8 H8 AGS sing 46 n n 
N6 HN61 AGS sing 47 n n 
N6 HN62 AGS sing 48 n n 
C2 H2 AGS sing 49 n n 
#
_atom_sites.entry_id                     1H7U 
_atom_sites.fract_transf_matrix[1][1]    0.013449 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013538 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007346 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MG A 1 1365 1365 MG MG . 
D 3 AGS A 1 1366 1366 AGS AGS . 
E 2 MG B 1 1365 1365 MG MG . 
F 3 AGS B 1 1366 1366 AGS AGS . 
G 4 HOH A 1 2001 2001 HOH HOH . 
G 4 HOH A 2 2002 2002 HOH HOH . 
G 4 HOH A 3 2003 2003 HOH HOH . 
G 4 HOH A 4 2004 2004 HOH HOH . 
G 4 HOH A 5 2005 2005 HOH HOH . 
G 4 HOH A 6 2006 2006 HOH HOH . 
G 4 HOH A 7 2007 2007 HOH HOH . 
G 4 HOH A 8 2008 2008 HOH HOH . 
G 4 HOH A 9 2009 2009 HOH HOH . 
G 4 HOH A 10 2010 2010 HOH HOH . 
G 4 HOH A 11 2011 2011 HOH HOH . 
G 4 HOH A 12 2012 2012 HOH HOH . 
G 4 HOH A 13 2013 2013 HOH HOH . 
G 4 HOH A 14 2014 2014 HOH HOH . 
G 4 HOH A 15 2015 2015 HOH HOH . 
G 4 HOH A 16 2016 2016 HOH HOH . 
H 4 HOH B 1 2001 2001 HOH HOH . 
H 4 HOH B 2 2002 2002 HOH HOH . 
H 4 HOH B 3 2003 2003 HOH HOH . 
H 4 HOH B 4 2004 2004 HOH HOH . 
H 4 HOH B 5 2005 2005 HOH HOH . 
H 4 HOH B 6 2006 2006 HOH HOH . 
H 4 HOH B 7 2007 2007 HOH HOH . 
H 4 HOH B 8 2008 2008 HOH HOH . 
H 4 HOH B 9 2009 2009 HOH HOH . 
H 4 HOH B 10 2010 2010 HOH HOH . 
H 4 HOH B 11 2011 2011 HOH HOH . 
H 4 HOH B 12 2012 2012 HOH HOH . 
H 4 HOH B 13 2013 2013 HOH HOH . 
H 4 HOH B 14 2014 2014 HOH HOH . 
H 4 HOH B 15 2015 2015 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG AGS . . . F 3 39.368 49.008 -5.275 1 99.11 ? PG AGS 1366 B 1 
HETATM 2 S S1G AGS . . . F 3 37.877 49.851 -5.868 1 100.14 ? S1G AGS 1366 B 1 
HETATM 3 O O2G AGS . . . F 3 39.845 48.003 -6.285 1 97.52 ? O2G AGS 1366 B 1 
HETATM 4 O O3G AGS . . . F 3 40.396 49.955 -4.782 1 100.14 ? O3G AGS 1366 B 1 
HETATM 5 P PB AGS . . . F 3 38.456 46.78 -3.822 1 84.09 ? PB AGS 1366 B 1 
HETATM 6 O O1B AGS . . . F 3 37.596 46.449 -2.744 1 83.76 ? O1B AGS 1366 B 1 
HETATM 7 O O2B AGS . . . F 3 38.733 45.834 -4.875 1 84.62 ? O2B AGS 1366 B 1 
HETATM 8 O O3B AGS . . . F 3 38.806 48.278 -3.997 1 91.52 ? O3B AGS 1366 B 1 
HETATM 9 P PA AGS . . . F 3 41.173 46.324 -2.464 1 72.1 ? PA AGS 1366 B 1 
HETATM 10 O O1A AGS . . . F 3 41.825 47.256 -1.593 1 72.76 ? O1A AGS 1366 B 1 
HETATM 11 O O2A AGS . . . F 3 41.931 45.223 -3.037 1 73.5 ? O2A AGS 1366 B 1 
HETATM 12 O O3A AGS . . . F 3 39.651 46.404 -2.758 1 78.58 ? O3A AGS 1366 B 1 
HETATM 13 O O5' AGS . . . F 3 40.61 45.787 -1.232 1 71.87 ? O5' AGS 1366 B 1 
HETATM 14 C C5' AGS . . . F 3 39.813 44.95 -0.681 1 69.62 ? C5' AGS 1366 B 1 
HETATM 15 C C4' AGS . . . F 3 39.316 43.774 0.04 1 67.24 ? C4' AGS 1366 B 1 
HETATM 16 O O4' AGS . . . F 3 39.818 43.915 1.375 1 68.74 ? O4' AGS 1366 B 1 
HETATM 17 C C3' AGS . . . F 3 37.896 44.192 -0.106 1 66.86 ? C3' AGS 1366 B 1 
HETATM 18 O O3' AGS . . . F 3 37.078 43.329 -0.85 1 68.31 ? O3' AGS 1366 B 1 
HETATM 19 C C2' AGS . . . F 3 37.432 44.46 1.343 1 67.87 ? C2' AGS 1366 B 1 
HETATM 20 O O2' AGS . . . F 3 36.398 43.552 1.688 1 67.86 ? O2' AGS 1366 B 1 
HETATM 21 C C1' AGS . . . F 3 38.695 44.292 2.257 1 67.67 ? C1' AGS 1366 B 1 
HETATM 22 N N9 AGS . . . F 3 39.111 45.487 3.034 1 64.33 ? N9 AGS 1366 B 1 
HETATM 23 C C8 AGS . . . F 3 40.141 46.398 2.801 1 63.15 ? C8 AGS 1366 B 1 
HETATM 24 N N7 AGS . . . F 3 40.237 47.331 3.688 1 64.55 ? N7 AGS 1366 B 1 
HETATM 25 C C5 AGS . . . F 3 39.211 47.022 4.562 1 63.58 ? C5 AGS 1366 B 1 
HETATM 26 C C6 AGS . . . F 3 38.743 47.64 5.768 1 62.64 ? C6 AGS 1366 B 1 
HETATM 27 N N6 AGS . . . F 3 39.323 48.721 6.262 1 62.55 ? N6 AGS 1366 B 1 
HETATM 28 N N1 AGS . . . F 3 37.661 47.078 6.433 1 63.64 ? N1 AGS 1366 B 1 
HETATM 29 C C2 AGS . . . F 3 37.059 45.975 5.943 1 63.52 ? C2 AGS 1366 B 1 
HETATM 30 N N3 AGS . . . F 3 37.407 45.303 4.819 1 62.99 ? N3 AGS 1366 B 1 
HETATM 31 C C4 AGS . . . F 3 38.514 45.911 4.166 1 63.7 ? C4 AGS 1366 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           240 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           31 
#