data_1H8H # _model_server_result.job_id JDxO44uuWOL90EudNXu_rg _model_server_result.datetime_utc '2024-11-28 03:23:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1h8h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":600}' # _entry.id 1H8H # _exptl.entry_id 1H8H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1H8H _cell.length_a 280 _cell.length_b 107 _cell.length_c 139.1 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1H8H _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 J N N ? 4 M N N ? 4 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 176 A THR 176 1_555 I MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc2 H O2G ATP . A ATP 600 1_555 I MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc3 H O2B ATP . A ATP 600 1_555 I MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc4 I MG MG . A MG 601 1_555 T O HOH . A HOH 2023 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc5 I MG MG . A MG 601 1_555 T O HOH . A HOH 2024 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc6 B OG1 THR 176 B THR 176 1_555 K MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc7 J O2G ATP . B ATP 600 1_555 K MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc8 J O2B ATP . B ATP 600 1_555 K MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc9 K MG MG . B MG 601 1_555 U O HOH . B HOH 2026 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc10 C OG1 THR 176 C THR 176 1_555 N MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc11 M O2G ATP . C ATP 600 1_555 N MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc12 M O2B ATP . C ATP 600 1_555 N MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc13 N MG MG . C MG 601 1_555 V O HOH . C HOH 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc14 N MG MG . C MG 601 1_555 V O HOH . C HOH 2014 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.799 ? metalc ? metalc15 D OG1 THR 167 D THR 163 1_555 P MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc16 O O2B ADP . D ADP 600 1_555 P MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc17 F OG1 THR 167 F THR 163 1_555 S MG MG . F MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc18 R O2B ATP . F ATP 600 1_555 S MG MG . F MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc19 R O2G ATP . F ATP 600 1_555 S MG MG . F MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc20 S MG MG . F MG 601 1_555 Y O HOH . F HOH 2008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 1H8H _atom_sites.fract_transf_matrix[1][1] 0.003571 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009346 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007189 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 4 ATP A 1 600 600 ATP ATP . I 5 MG A 1 601 601 MG MG . J 4 ATP B 1 600 600 ATP ATP . K 5 MG B 1 601 601 MG MG . L 6 GOL B 1 701 701 GOL GOL . M 4 ATP C 1 600 600 ATP ATP . N 5 MG C 1 601 601 MG MG . O 7 ADP D 1 600 600 ADP ADP . P 5 MG D 1 601 601 MG MG . Q 8 PO4 E 1 602 602 PO4 PO4 . R 4 ATP F 1 600 600 ATP ATP . S 5 MG F 1 601 601 MG MG . T 9 HOH A 1 2001 2001 HOH HOH . T 9 HOH A 2 2002 2002 HOH HOH . T 9 HOH A 3 2003 2003 HOH HOH . T 9 HOH A 4 2004 2004 HOH HOH . T 9 HOH A 5 2005 2005 HOH HOH . T 9 HOH A 6 2006 2006 HOH HOH . T 9 HOH A 7 2007 2007 HOH HOH . T 9 HOH A 8 2008 2008 HOH HOH . T 9 HOH A 9 2009 2009 HOH HOH . T 9 HOH A 10 2010 2010 HOH HOH . T 9 HOH A 11 2011 2011 HOH HOH . T 9 HOH A 12 2012 2012 HOH HOH . T 9 HOH A 13 2013 2013 HOH HOH . T 9 HOH A 14 2014 2014 HOH HOH . T 9 HOH A 15 2015 2015 HOH HOH . T 9 HOH A 16 2016 2016 HOH HOH . T 9 HOH A 17 2017 2017 HOH HOH . T 9 HOH A 18 2018 2018 HOH HOH . T 9 HOH A 19 2019 2019 HOH HOH . T 9 HOH A 20 2020 2020 HOH HOH . T 9 HOH A 21 2021 2021 HOH HOH . T 9 HOH A 22 2022 2022 HOH HOH . T 9 HOH A 23 2023 2023 HOH HOH . T 9 HOH A 24 2024 2024 HOH HOH . U 9 HOH B 1 2001 2001 HOH HOH . U 9 HOH B 2 2002 2002 HOH HOH . U 9 HOH B 3 2003 2003 HOH HOH . U 9 HOH B 4 2004 2004 HOH HOH . U 9 HOH B 5 2005 2005 HOH HOH . U 9 HOH B 6 2006 2006 HOH HOH . U 9 HOH B 7 2007 2007 HOH HOH . U 9 HOH B 8 2008 2008 HOH HOH . U 9 HOH B 9 2009 2009 HOH HOH . U 9 HOH B 10 2010 2010 HOH HOH . U 9 HOH B 11 2011 2011 HOH HOH . U 9 HOH B 12 2012 2012 HOH HOH . U 9 HOH B 13 2013 2013 HOH HOH . U 9 HOH B 14 2014 2014 HOH HOH . U 9 HOH B 15 2015 2015 HOH HOH . U 9 HOH B 16 2016 2016 HOH HOH . U 9 HOH B 17 2017 2017 HOH HOH . U 9 HOH B 18 2018 2018 HOH HOH . U 9 HOH B 19 2019 2019 HOH HOH . U 9 HOH B 20 2020 2020 HOH HOH . U 9 HOH B 21 2021 2021 HOH HOH . U 9 HOH B 22 2022 2022 HOH HOH . U 9 HOH B 23 2023 2023 HOH HOH . U 9 HOH B 24 2024 2024 HOH HOH . U 9 HOH B 25 2025 2025 HOH HOH . U 9 HOH B 26 2026 2026 HOH HOH . V 9 HOH C 1 2001 2001 HOH HOH . V 9 HOH C 2 2002 2002 HOH HOH . V 9 HOH C 3 2003 2003 HOH HOH . V 9 HOH C 4 2004 2004 HOH HOH . V 9 HOH C 5 2005 2005 HOH HOH . V 9 HOH C 6 2006 2006 HOH HOH . V 9 HOH C 7 2007 2007 HOH HOH . V 9 HOH C 8 2008 2008 HOH HOH . V 9 HOH C 9 2009 2009 HOH HOH . V 9 HOH C 10 2010 2010 HOH HOH . V 9 HOH C 11 2011 2011 HOH HOH . V 9 HOH C 12 2012 2012 HOH HOH . V 9 HOH C 13 2013 2013 HOH HOH . V 9 HOH C 14 2014 2014 HOH HOH . W 9 HOH D 1 2001 2001 HOH HOH . W 9 HOH D 2 2002 2002 HOH HOH . W 9 HOH D 3 2003 2003 HOH HOH . W 9 HOH D 4 2004 2004 HOH HOH . W 9 HOH D 5 2005 2005 HOH HOH . W 9 HOH D 6 2006 2006 HOH HOH . W 9 HOH D 7 2007 2007 HOH HOH . W 9 HOH D 8 2008 2008 HOH HOH . W 9 HOH D 9 2009 2009 HOH HOH . W 9 HOH D 10 2010 2010 HOH HOH . W 9 HOH D 11 2011 2011 HOH HOH . W 9 HOH D 12 2012 2012 HOH HOH . W 9 HOH D 13 2013 2013 HOH HOH . W 9 HOH D 14 2014 2014 HOH HOH . W 9 HOH D 15 2015 2015 HOH HOH . X 9 HOH E 1 2001 2001 HOH HOH . X 9 HOH E 2 2002 2002 HOH HOH . X 9 HOH E 3 2003 2003 HOH HOH . X 9 HOH E 4 2004 2004 HOH HOH . X 9 HOH E 5 2005 2005 HOH HOH . X 9 HOH E 6 2006 2006 HOH HOH . X 9 HOH E 7 2007 2007 HOH HOH . X 9 HOH E 8 2008 2008 HOH HOH . X 9 HOH E 9 2009 2009 HOH HOH . X 9 HOH E 10 2010 2010 HOH HOH . X 9 HOH E 11 2011 2011 HOH HOH . X 9 HOH E 12 2012 2012 HOH HOH . X 9 HOH E 13 2013 2013 HOH HOH . Y 9 HOH F 1 2001 2001 HOH HOH . Y 9 HOH F 2 2002 2002 HOH HOH . Y 9 HOH F 3 2003 2003 HOH HOH . Y 9 HOH F 4 2004 2004 HOH HOH . Y 9 HOH F 5 2005 2005 HOH HOH . Y 9 HOH F 6 2006 2006 HOH HOH . Y 9 HOH F 7 2007 2007 HOH HOH . Y 9 HOH F 8 2008 2008 HOH HOH . Y 9 HOH F 9 2009 2009 HOH HOH . Y 9 HOH F 10 2010 2010 HOH HOH . Y 9 HOH F 11 2011 2011 HOH HOH . Y 9 HOH F 12 2012 2012 HOH HOH . Y 9 HOH F 13 2013 2013 HOH HOH . Y 9 HOH F 14 2014 2014 HOH HOH . Y 9 HOH F 15 2015 2015 HOH HOH . Y 9 HOH F 16 2016 2016 HOH HOH . Y 9 HOH F 17 2017 2017 HOH HOH . Z 9 HOH G 1 2001 2001 HOH HOH . Z 9 HOH G 2 2002 2002 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . M 4 107.821 56.875 94.522 1 24.73 ? PG ATP 600 C 1 HETATM 2 O O1G ATP . . . M 4 107.924 57.616 93.242 1 27.04 ? O1G ATP 600 C 1 HETATM 3 O O2G ATP . . . M 4 108.618 55.621 94.329 1 25.45 ? O2G ATP 600 C 1 HETATM 4 O O3G ATP . . . M 4 108.242 57.622 95.706 1 23.85 ? O3G ATP 600 C 1 HETATM 5 P PB ATP . . . M 4 105.516 55.149 94.088 1 3.93 ? PB ATP 600 C 1 HETATM 6 O O1B ATP . . . M 4 105.328 55.488 92.626 1 5.59 ? O1B ATP 600 C 1 HETATM 7 O O2B ATP . . . M 4 106.613 54.105 94.032 1 10.52 ? O2B ATP 600 C 1 HETATM 8 O O3B ATP . . . M 4 106.255 56.468 94.825 1 16.69 ? O3B ATP 600 C 1 HETATM 9 P PA ATP . . . M 4 104.347 53.805 96.19 1 17.34 ? PA ATP 600 C 1 HETATM 10 O O1A ATP . . . M 4 104.546 52.491 95.621 1 15.83 ? O1A ATP 600 C 1 HETATM 11 O O2A ATP . . . M 4 105.36 54.292 97.113 1 14.74 ? O2A ATP 600 C 1 HETATM 12 O O3A ATP . . . M 4 104.274 54.853 94.912 1 14.17 ? O3A ATP 600 C 1 HETATM 13 O O5' ATP . . . M 4 102.838 54.083 96.698 1 19.78 ? O5' ATP 600 C 1 HETATM 14 C C5' ATP . . . M 4 102.504 55.334 97.413 1 14.84 ? C5' ATP 600 C 1 HETATM 15 C C4' ATP . . . M 4 101.45 55.011 98.458 1 14.42 ? C4' ATP 600 C 1 HETATM 16 O O4' ATP . . . M 4 100.241 54.643 97.724 1 14.04 ? O4' ATP 600 C 1 HETATM 17 C C3' ATP . . . M 4 101.704 53.792 99.354 1 17.11 ? C3' ATP 600 C 1 HETATM 18 O O3' ATP . . . M 4 102.167 54.313 100.613 1 24.42 ? O3' ATP 600 C 1 HETATM 19 C C2' ATP . . . M 4 100.338 53.226 99.662 1 19.24 ? C2' ATP 600 C 1 HETATM 20 O O2' ATP . . . M 4 99.912 53.604 100.988 1 29.33 ? O2' ATP 600 C 1 HETATM 21 C C1' ATP . . . M 4 99.438 53.826 98.576 1 17.85 ? C1' ATP 600 C 1 HETATM 22 N N9 ATP . . . M 4 98.952 52.706 97.773 1 18.81 ? N9 ATP 600 C 1 HETATM 23 C C8 ATP . . . M 4 99.679 51.996 96.856 1 20.81 ? C8 ATP 600 C 1 HETATM 24 N N7 ATP . . . M 4 98.967 50.962 96.366 1 23.38 ? N7 ATP 600 C 1 HETATM 25 C C5 ATP . . . M 4 97.748 51.085 97.011 1 21.78 ? C5 ATP 600 C 1 HETATM 26 C C6 ATP . . . M 4 96.596 50.29 96.923 1 22.21 ? C6 ATP 600 C 1 HETATM 27 N N6 ATP . . . M 4 96.555 49.293 96.045 1 23.87 ? N6 ATP 600 C 1 HETATM 28 N N1 ATP . . . M 4 95.565 50.616 97.732 1 22.45 ? N1 ATP 600 C 1 HETATM 29 C C2 ATP . . . M 4 95.688 51.678 98.583 1 21.83 ? C2 ATP 600 C 1 HETATM 30 N N3 ATP . . . M 4 96.741 52.452 98.765 1 22.47 ? N3 ATP 600 C 1 HETATM 31 C C4 ATP . . . M 4 97.733 52.109 97.918 1 20.74 ? C4 ATP 600 C 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #