data_1H8P # _model_server_result.job_id ocsetocdi3xwswz-gkik7Q _model_server_result.datetime_utc '2024-11-06 07:33:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1h8p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1111}' # _entry.id 1H8P # _exptl.entry_id 1H8P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 184.151 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1H8P _cell.length_a 90.881 _cell.length_b 90.881 _cell.length_c 52.21 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1H8P _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 24 1_555 A SG CYS 48 A CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf2 A SG CYS 38 A CYS 38 1_555 A SG CYS 61 A CYS 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 69 A CYS 69 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf4 A SG CYS 83 A CYS 83 1_555 A SG CYS 109 A CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf5 B SG CYS 24 B CYS 24 1_555 B SG CYS 48 B CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf6 B SG CYS 38 B CYS 38 1_555 B SG CYS 61 B CYS 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 B SG CYS 69 B CYS 69 1_555 B SG CYS 94 B CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 B SG CYS 83 B CYS 83 1_555 B SG CYS 109 B CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? # _chem_comp.formula 'C5 H15 N O4 P 1' _chem_comp.formula_weight 184.151 _chem_comp.id PC _chem_comp.mon_nstd_flag . _chem_comp.name PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1 PC doub 237 n n P1 O3 PC sing 238 n n P1 O4 PC sing 239 n n P1 O2 PC sing 240 n n O3 HO3 PC sing 241 n n O4 HO4 PC sing 242 n n O2 C1 PC sing 243 n n C1 C2 PC sing 244 n n C1 H11 PC sing 245 n n C1 H12 PC sing 246 n n C2 N1 PC sing 247 n n C2 H21 PC sing 248 n n C2 H22 PC sing 249 n n N1 C3 PC sing 250 n n N1 C4 PC sing 251 n n N1 C5 PC sing 252 n n C3 H31 PC sing 253 n n C3 H32 PC sing 254 n n C3 H33 PC sing 255 n n C4 H41 PC sing 256 n n C4 H42 PC sing 257 n n C4 H43 PC sing 258 n n C5 H51 PC sing 259 n n C5 H52 PC sing 260 n n C5 H53 PC sing 261 n n # _atom_sites.entry_id 1H8P _atom_sites.fract_transf_matrix[1][1] 0.011003 _atom_sites.fract_transf_matrix[1][2] 0.006353 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012706 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019153 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PC A 1 1110 1110 PC PC . D 2 PC A 1 1111 1111 PC PC . E 2 PC B 1 1110 1110 PC PC . F 2 PC B 1 1111 1111 PC PC . G 3 HOH A 1 2001 2001 HOH HOH . G 3 HOH A 2 2002 2002 HOH HOH . G 3 HOH A 3 2003 2003 HOH HOH . G 3 HOH A 4 2004 2004 HOH HOH . G 3 HOH A 5 2005 2005 HOH HOH . G 3 HOH A 6 2006 2006 HOH HOH . G 3 HOH A 7 2007 2007 HOH HOH . G 3 HOH A 8 2008 2008 HOH HOH . G 3 HOH A 9 2009 2009 HOH HOH . G 3 HOH A 10 2010 2010 HOH HOH . G 3 HOH A 11 2011 2011 HOH HOH . G 3 HOH A 12 2012 2012 HOH HOH . G 3 HOH A 13 2013 2013 HOH HOH . G 3 HOH A 14 2014 2014 HOH HOH . G 3 HOH A 15 2015 2015 HOH HOH . G 3 HOH A 16 2016 2016 HOH HOH . G 3 HOH A 17 2017 2017 HOH HOH . G 3 HOH A 18 2018 2018 HOH HOH . G 3 HOH A 19 2019 2019 HOH HOH . G 3 HOH A 20 2020 2020 HOH HOH . G 3 HOH A 21 2021 2021 HOH HOH . G 3 HOH A 22 2022 2022 HOH HOH . G 3 HOH A 23 2023 2023 HOH HOH . G 3 HOH A 24 2024 2024 HOH HOH . G 3 HOH A 25 2025 2025 HOH HOH . G 3 HOH A 26 2026 2026 HOH HOH . G 3 HOH A 27 2027 2027 HOH HOH . G 3 HOH A 28 2028 2028 HOH HOH . G 3 HOH A 29 2029 2029 HOH HOH . G 3 HOH A 30 2030 2030 HOH HOH . G 3 HOH A 31 2031 2031 HOH HOH . G 3 HOH A 32 2032 2032 HOH HOH . G 3 HOH A 33 2033 2033 HOH HOH . G 3 HOH A 34 2034 2034 HOH HOH . G 3 HOH A 35 2035 2035 HOH HOH . G 3 HOH A 36 2036 2036 HOH HOH . G 3 HOH A 37 2037 2037 HOH HOH . G 3 HOH A 38 2038 2038 HOH HOH . G 3 HOH A 39 2039 2039 HOH HOH . G 3 HOH A 40 2040 2040 HOH HOH . G 3 HOH A 41 2041 2041 HOH HOH . G 3 HOH A 42 2042 2042 HOH HOH . G 3 HOH A 43 2043 2043 HOH HOH . G 3 HOH A 44 2044 2044 HOH HOH . G 3 HOH A 45 2045 2045 HOH HOH . G 3 HOH A 46 2046 2046 HOH HOH . G 3 HOH A 47 2047 2047 HOH HOH . G 3 HOH A 48 2048 2048 HOH HOH . G 3 HOH A 49 2049 2049 HOH HOH . G 3 HOH A 50 2050 2050 HOH HOH . G 3 HOH A 51 2051 2051 HOH HOH . G 3 HOH A 52 2052 2052 HOH HOH . G 3 HOH A 53 2053 2053 HOH HOH . G 3 HOH A 54 2054 2054 HOH HOH . G 3 HOH A 55 2055 2055 HOH HOH . G 3 HOH A 56 2056 2056 HOH HOH . G 3 HOH A 57 2057 2057 HOH HOH . G 3 HOH A 58 2058 2058 HOH HOH . G 3 HOH A 59 2059 2059 HOH HOH . G 3 HOH A 60 2060 2060 HOH HOH . G 3 HOH A 61 2061 2061 HOH HOH . G 3 HOH A 62 2062 2062 HOH HOH . G 3 HOH A 63 2063 2063 HOH HOH . G 3 HOH A 64 2064 2064 HOH HOH . G 3 HOH A 65 2065 2065 HOH HOH . G 3 HOH A 66 2066 2066 HOH HOH . G 3 HOH A 67 2067 2067 HOH HOH . G 3 HOH A 68 2068 2068 HOH HOH . G 3 HOH A 69 2069 2069 HOH HOH . G 3 HOH A 70 2070 2070 HOH HOH . G 3 HOH A 71 2071 2071 HOH HOH . G 3 HOH A 72 2072 2072 HOH HOH . G 3 HOH A 73 2073 2073 HOH HOH . G 3 HOH A 74 2074 2074 HOH HOH . G 3 HOH A 75 2075 2075 HOH HOH . G 3 HOH A 76 2076 2076 HOH HOH . G 3 HOH A 77 2077 2077 HOH HOH . G 3 HOH A 78 2078 2078 HOH HOH . G 3 HOH A 79 2079 2079 HOH HOH . G 3 HOH A 80 2080 2080 HOH HOH . G 3 HOH A 81 2081 2081 HOH HOH . G 3 HOH A 82 2082 2082 HOH HOH . G 3 HOH A 83 2083 2083 HOH HOH . G 3 HOH A 84 2084 2084 HOH HOH . G 3 HOH A 85 2085 2085 HOH HOH . G 3 HOH A 86 2086 2086 HOH HOH . G 3 HOH A 87 2087 2087 HOH HOH . G 3 HOH A 88 2088 2088 HOH HOH . G 3 HOH A 89 2089 2089 HOH HOH . G 3 HOH A 90 2090 2090 HOH HOH . G 3 HOH A 91 2091 2091 HOH HOH . G 3 HOH A 92 2092 2092 HOH HOH . G 3 HOH A 93 2093 2093 HOH HOH . G 3 HOH A 94 2094 2094 HOH HOH . G 3 HOH A 95 2095 2095 HOH HOH . G 3 HOH A 96 2096 2096 HOH HOH . G 3 HOH A 97 2097 2097 HOH HOH . G 3 HOH A 98 2098 2098 HOH HOH . G 3 HOH A 99 2099 2099 HOH HOH . G 3 HOH A 100 2100 2100 HOH HOH . H 3 HOH B 1 2001 2001 HOH HOH . H 3 HOH B 2 2002 2002 HOH HOH . H 3 HOH B 3 2003 2003 HOH HOH . H 3 HOH B 4 2004 2004 HOH HOH . H 3 HOH B 5 2005 2005 HOH HOH . H 3 HOH B 6 2006 2006 HOH HOH . H 3 HOH B 7 2007 2007 HOH HOH . H 3 HOH B 8 2008 2008 HOH HOH . H 3 HOH B 9 2009 2009 HOH HOH . H 3 HOH B 10 2010 2010 HOH HOH . H 3 HOH B 11 2011 2011 HOH HOH . H 3 HOH B 12 2012 2012 HOH HOH . H 3 HOH B 13 2013 2013 HOH HOH . H 3 HOH B 14 2014 2014 HOH HOH . H 3 HOH B 15 2015 2015 HOH HOH . H 3 HOH B 16 2016 2016 HOH HOH . H 3 HOH B 17 2017 2017 HOH HOH . H 3 HOH B 18 2018 2018 HOH HOH . H 3 HOH B 19 2019 2019 HOH HOH . H 3 HOH B 20 2020 2020 HOH HOH . H 3 HOH B 21 2021 2021 HOH HOH . H 3 HOH B 22 2022 2022 HOH HOH . H 3 HOH B 23 2023 2023 HOH HOH . H 3 HOH B 24 2024 2024 HOH HOH . H 3 HOH B 25 2025 2025 HOH HOH . H 3 HOH B 26 2026 2026 HOH HOH . H 3 HOH B 27 2027 2027 HOH HOH . H 3 HOH B 28 2028 2028 HOH HOH . H 3 HOH B 29 2029 2029 HOH HOH . H 3 HOH B 30 2030 2030 HOH HOH . H 3 HOH B 31 2031 2031 HOH HOH . H 3 HOH B 32 2032 2032 HOH HOH . H 3 HOH B 33 2033 2033 HOH HOH . H 3 HOH B 34 2034 2034 HOH HOH . H 3 HOH B 35 2035 2035 HOH HOH . H 3 HOH B 36 2036 2036 HOH HOH . H 3 HOH B 37 2037 2037 HOH HOH . H 3 HOH B 38 2038 2038 HOH HOH . H 3 HOH B 39 2039 2039 HOH HOH . H 3 HOH B 40 2040 2040 HOH HOH . H 3 HOH B 41 2041 2041 HOH HOH . H 3 HOH B 42 2042 2042 HOH HOH . H 3 HOH B 43 2043 2043 HOH HOH . H 3 HOH B 44 2044 2044 HOH HOH . H 3 HOH B 45 2045 2045 HOH HOH . H 3 HOH B 46 2046 2046 HOH HOH . H 3 HOH B 47 2047 2047 HOH HOH . H 3 HOH B 48 2048 2048 HOH HOH . H 3 HOH B 49 2049 2049 HOH HOH . H 3 HOH B 50 2050 2050 HOH HOH . H 3 HOH B 51 2051 2051 HOH HOH . H 3 HOH B 52 2052 2052 HOH HOH . H 3 HOH B 53 2053 2053 HOH HOH . H 3 HOH B 54 2054 2054 HOH HOH . H 3 HOH B 55 2055 2055 HOH HOH . H 3 HOH B 56 2056 2056 HOH HOH . H 3 HOH B 57 2057 2057 HOH HOH . H 3 HOH B 58 2058 2058 HOH HOH . H 3 HOH B 59 2059 2059 HOH HOH . H 3 HOH B 60 2060 2060 HOH HOH . H 3 HOH B 61 2061 2061 HOH HOH . H 3 HOH B 62 2062 2062 HOH HOH . H 3 HOH B 63 2063 2063 HOH HOH . H 3 HOH B 64 2064 2064 HOH HOH . H 3 HOH B 65 2065 2065 HOH HOH . H 3 HOH B 66 2066 2066 HOH HOH . H 3 HOH B 67 2067 2067 HOH HOH . H 3 HOH B 68 2068 2068 HOH HOH . H 3 HOH B 69 2069 2069 HOH HOH . H 3 HOH B 70 2070 2070 HOH HOH . H 3 HOH B 71 2071 2071 HOH HOH . H 3 HOH B 72 2072 2072 HOH HOH . H 3 HOH B 73 2073 2073 HOH HOH . H 3 HOH B 74 2074 2074 HOH HOH . H 3 HOH B 75 2075 2075 HOH HOH . H 3 HOH B 76 2076 2076 HOH HOH . H 3 HOH B 77 2077 2077 HOH HOH . H 3 HOH B 78 2078 2078 HOH HOH . H 3 HOH B 79 2079 2079 HOH HOH . H 3 HOH B 80 2080 2080 HOH HOH . H 3 HOH B 81 2081 2081 HOH HOH . H 3 HOH B 82 2082 2082 HOH HOH . H 3 HOH B 83 2083 2083 HOH HOH . H 3 HOH B 84 2084 2084 HOH HOH . H 3 HOH B 85 2085 2085 HOH HOH . H 3 HOH B 86 2086 2086 HOH HOH . H 3 HOH B 87 2087 2087 HOH HOH . H 3 HOH B 88 2088 2088 HOH HOH . H 3 HOH B 89 2089 2089 HOH HOH . H 3 HOH B 90 2090 2090 HOH HOH . H 3 HOH B 91 2091 2091 HOH HOH . H 3 HOH B 92 2092 2092 HOH HOH . H 3 HOH B 93 2093 2093 HOH HOH . H 3 HOH B 94 2094 2094 HOH HOH . H 3 HOH B 95 2095 2095 HOH HOH . H 3 HOH B 96 2096 2096 HOH HOH . H 3 HOH B 97 2097 2097 HOH HOH . H 3 HOH B 98 2098 2098 HOH HOH . H 3 HOH B 99 2099 2099 HOH HOH . H 3 HOH B 100 2100 2100 HOH HOH . H 3 HOH B 101 2101 2101 HOH HOH . H 3 HOH B 102 2102 2102 HOH HOH . H 3 HOH B 103 2103 2103 HOH HOH . H 3 HOH B 104 2104 2104 HOH HOH . H 3 HOH B 105 2105 2105 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 PC . . . F 2 -11.784 49.042 7.986 1 24.33 ? P1 PC 1111 B 1 HETATM 2 O O1 PC . . . F 2 -11.517 48.048 9.071 1 22.72 ? O1 PC 1111 B 1 HETATM 3 O O3 PC . . . F 2 -10.808 50.179 7.999 1 24.35 ? O3 PC 1111 B 1 HETATM 4 O O4 PC . . . F 2 -13.356 49.536 8.151 1 25.71 ? O4 PC 1111 B 1 HETATM 5 O O2 PC . . . F 2 -11.563 48.36 6.54 1 22.87 ? O2 PC 1111 B 1 HETATM 6 C C1 PC . . . F 2 -12.333 47.195 6.231 1 21.47 ? C1 PC 1111 B 1 HETATM 7 C C2 PC . . . F 2 -11.847 46.755 4.82 1 18.5 ? C2 PC 1111 B 1 HETATM 8 N N1 PC . . . F 2 -10.557 46.012 4.659 1 18.81 ? N1 PC 1111 B 1 HETATM 9 C C3 PC . . . F 2 -10.461 44.925 5.632 1 15.91 ? C3 PC 1111 B 1 HETATM 10 C C4 PC . . . F 2 -10.525 45.46 3.309 1 17.77 ? C4 PC 1111 B 1 HETATM 11 C C5 PC . . . F 2 -9.419 46.937 4.83 1 18.71 ? C5 PC 1111 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 11 #