data_1H8T # _model_server_result.job_id sfb-Jn3T-kM_aMeMzlx03A _model_server_result.datetime_utc '2025-02-26 21:32:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1h8t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1000}' # _entry.id 1H8T # _exptl.entry_id 1H8T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 215.332 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '12-AMINO-DODECANOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1H8T _cell.length_a 300.85 _cell.length_b 300.85 _cell.length_c 1476.62 _cell.Z_PDB 1080 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1H8T _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? 240-MERIC 240 'complete icosahedral assembly' 1 ? tetrameric 4 'icosahedral asymmetric unit' 2 ? eicosameric 20 'icosahedral pentamer' 3 ? 24-meric 24 'icosahedral 23 hexamer' 4 ? tetrameric 4 'icosahedral asymmetric unit, std point frame' 5 ? 80-meric 80 'crystal asymmetric unit, crystal frame' 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 (1-60) A,B,C,D,E,F,G,H,I 2 1 A,B,C,D,E,F,G,H,I 3 (1-5) A,B,C,D,E,F,G,H,I 4 (1,2,6,10,23,24) A,B,C,D,E,F,G,H,I 5 P A,B,C,D,E,F,G,H,I 6 (X0)(1-5,11-15,21-25,36-40) # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? 0.793257 -0.49338 -0.35682 0.528149 0.849152 0.000009 0.30299 -0.188461 0.934173 131.71199 -0.0069 -344.83466 X0 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 0.507091 -0.649919 0.566095 0.861615 0.36558 -0.352096 0.02188 0.666301 0.745362 -208.96134 129.96817 93.99385 3 'point symmetry operation' ? ? -0.290451 -0.189976 0.937842 0.744203 -0.660932 0.096598 0.601498 0.726001 0.333349 -346.18311 -35.65695 246.07907 4 'point symmetry operation' ? ? -0.290451 0.744203 0.601498 -0.189976 -0.660932 0.726001 0.937842 0.096598 0.333349 -222.02949 -267.98708 246.07905 5 'point symmetry operation' ? ? 0.507091 0.861615 0.02188 -0.649919 0.36558 0.666301 0.566095 -0.352096 0.745362 -8.07656 -245.94988 93.99383 6 'point symmetry operation' ? ? -0.816394 -0.114204 0.56609 -0.114204 -0.928965 -0.352111 0.56609 -0.352111 0.745359 -208.95555 129.97974 93.99491 7 'point symmetry operation' ? ? -0.5 0.866025 -0.000005 -0.866025 -0.5 -0.000016 -0.000016 -0.000004 1 0.00545 0.01179 0 8 'point symmetry operation' ? ? 0.492634 0.641558 -0.587975 -0.869962 0.380045 -0.314217 0.021869 0.66631 0.745354 217.04142 115.99204 93.99669 9 'point symmetry operation' ? ? 0.789721 -0.477399 -0.385266 -0.120573 0.494979 -0.860499 0.6015 0.726007 0.333334 142.21604 317.63974 246.08475 10 'point symmetry operation' ? ? -0.019303 -0.944486 0.327985 0.346511 -0.314034 -0.883919 0.937847 0.096589 0.333337 -121.06457 326.28462 246.08365 11 'point symmetry operation' ? ? -0.442118 0.896957 0.00001 0.896957 0.442118 0.000016 0.00001 0.000016 -1 -0.00012 -0.00794 738.26552 12 'point symmetry operation' ? ? 0.548637 0.615257 -0.566088 0.835775 -0.421309 0.352107 -0.021862 -0.666301 -0.745362 208.96219 -129.97455 644.27167 13 'point symmetry operation' ? ? 0.795938 -0.508829 -0.327989 0.068512 -0.462599 0.883917 -0.601489 -0.726014 -0.333339 121.07326 -326.28002 492.18252 14 'point symmetry operation' ? ? -0.041977 -0.921852 0.385262 -0.3445 0.37531 0.860501 -0.937848 -0.096601 -0.333332 -142.2074 -317.63686 492.18011 15 'point symmetry operation' ? ? -0.807138 -0.053029 0.587977 0.167507 0.934455 0.314221 -0.566101 0.35211 -0.745351 -217.03487 -115.98963 644.26777 16 'point symmetry operation' ? ? 0.258512 -0.782753 -0.566099 -0.782753 -0.513153 0.352095 -0.566099 0.352095 -0.745359 208.97001 -129.96423 644.27061 17 'point symmetry operation' ? ? -0.555729 -0.831364 -0.000002 -0.831364 0.555729 0.000005 -0.000002 0.000005 -1 0.00804 0.00216 738.26552 18 'point symmetry operation' ? ? -0.99812 0.057246 -0.021878 0.057246 0.743485 -0.666297 -0.021878 -0.666297 -0.745365 8.08277 245.9525 644.27276 19 'point symmetry operation' ? ? -0.457293 0.655048 -0.601494 0.655048 -0.209356 -0.726004 -0.601494 -0.726004 -0.333351 222.0352 267.99178 492.18713 20 'point symmetry operation' ? ? 0.319349 0.1359 -0.937842 0.1359 -0.986002 -0.096603 -0.937842 -0.096603 -0.333348 346.19034 35.66246 492.1858 21 'point symmetry operation' ? ? 0.81933 -0.152792 0.552588 0.424571 -0.486004 -0.763898 0.385277 0.860497 -0.333326 -203.97739 281.98107 492.17138 22 'point symmetry operation' ? ? 0.295918 -0.220166 0.929494 -0.220166 -0.962596 -0.157913 0.929494 -0.157913 -0.333323 -343.10381 58.29547 492.17002 23 'point symmetry operation' ? ? -0.019303 0.346511 0.937847 -0.944486 -0.314034 0.096589 0.327985 -0.883919 0.333337 -346.18709 -35.64811 246.0877 24 'point symmetry operation' ? ? 0.309291 0.764111 0.566103 -0.747404 0.563391 -0.352105 -0.587985 -0.314204 0.745351 -208.96624 129.97718 94.00182 25 'point symmetry operation' ? ? 0.827595 0.455525 0.328 0.09872 0.457108 -0.883915 -0.552577 0.763904 0.333331 -121.07581 326.2828 246.0899 26 'point symmetry operation' ? ? -0.338633 -0.146205 0.92949 -0.723549 0.671969 -0.157906 -0.601502 -0.726004 -0.333337 -343.10025 58.29149 492.18186 27 'point symmetry operation' ? ? -0.277352 0.785954 0.552587 0.208618 0.610694 -0.763892 -0.937845 -0.096588 -0.333342 -203.97472 281.97765 492.18363 28 'point symmetry operation' ? ? 0.548637 0.835775 -0.021862 0.615257 -0.421309 -0.666301 -0.566088 0.352107 -0.745362 8.06993 245.95412 644.2717 29 'point symmetry operation' ? ? 0.997846 -0.065593 0.000013 -0.065593 -0.997846 0 0.000013 0 -1 -0.00479 0.00418 738.26552 30 'point symmetry operation' ? ? 0.449484 -0.67249 0.587981 -0.893021 -0.322163 0.314205 -0.021874 -0.666309 -0.745354 -217.03989 -115.9777 644.26883 31 'point symmetry operation' ? ? -0.499282 0.66736 -0.552582 -0.623642 0.165939 0.763895 0.601488 0.726013 0.333343 203.98037 -281.97468 246.08124 32 'point symmetry operation' ? ? 0.309735 0.200281 -0.92949 -0.156554 0.974964 0.157911 0.937846 0.096605 0.333335 343.10736 -58.28942 246.08432 33 'point symmetry operation' ? ? 0.309291 -0.747404 -0.587985 0.764111 0.563391 -0.314204 0.566103 -0.352105 0.745351 217.04855 115.98124 93.99776 34 'point symmetry operation' ? ? -0.5 -0.866025 -0.000016 0.866025 -0.5 -0.000004 -0.000005 -0.000016 1 0.01293 0.00117 0 35 'point symmetry operation' ? ? -0.999726 0.008347 0.021864 0.008347 -0.745639 0.666298 0.021864 0.666298 0.745365 -8.06364 -245.94911 93.99276 36 'point symmetry operation' ? ? 0.018585 -0.368364 -0.929496 0.92262 -0.351905 0.157909 -0.385262 -0.860506 0.33332 343.1116 -58.2903 246.09657 37 'point symmetry operation' ? ? -0.328301 -0.766069 -0.552591 0.168101 -0.623062 0.763895 -0.929495 0.157896 0.333329 203.98552 -281.97612 246.09307 38 'point symmetry operation' ? ? -0.838626 -0.434883 -0.328 -0.434883 0.171952 0.883917 -0.328 0.883917 -0.333326 121.08295 -326.27967 492.17389 39 'point symmetry operation' ? ? -0.807138 0.167507 -0.566101 -0.053029 0.934455 0.35211 0.587977 0.314221 -0.745351 208.97243 -129.97496 644.2637 40 'point symmetry operation' ? ? -0.277352 0.208618 -0.937845 0.785954 0.610694 -0.096588 0.552587 -0.763892 -0.333342 346.19368 35.65158 492.17955 41 'point symmetry operation' ? ? 0.81933 0.424571 0.385277 -0.152792 -0.486004 0.860497 0.552588 -0.763898 -0.333326 -142.2185 -317.63432 492.17386 42 'point symmetry operation' ? ? 0.789721 -0.120573 0.6015 -0.477399 0.494979 0.726007 -0.385266 -0.860499 0.333334 -222.03238 -267.99032 246.09129 43 'point symmetry operation' ? ? 0.309735 -0.156554 0.937846 0.200281 0.974964 0.096605 -0.92949 0.157911 0.333335 -346.18694 -35.66069 246.0909 44 'point symmetry operation' ? ? 0.042695 0.366352 0.929496 0.943718 0.290629 -0.157897 -0.327985 0.883924 -0.333324 -343.1048 58.28292 492.17322 45 'point symmetry operation' ? ? 0.357642 0.725507 0.58799 0.725507 -0.612298 0.314214 0.58799 0.314214 -0.745344 -217.04537 -115.98637 644.26086 46 'point symmetry operation' ? ? -0.499282 -0.623642 0.601488 0.66736 0.165939 0.726013 -0.552582 0.763895 0.333343 -222.0223 -267.99591 246.0853 47 'point symmetry operation' ? ? -0.77736 0.497273 0.385266 0.497273 0.110677 0.860506 0.385266 0.860506 -0.333317 -142.20903 -317.64088 492.16787 48 'point symmetry operation' ? ? 0.042695 0.943718 -0.327985 0.366352 0.290629 0.883924 0.929496 -0.157897 -0.333324 121.0716 -326.2851 492.17069 49 'point symmetry operation' ? ? 0.827595 0.09872 -0.552577 0.455525 0.457108 0.763904 0.328 -0.883915 0.333331 203.9747 -281.98255 246.08987 50 'point symmetry operation' ? ? 0.492634 -0.869962 0.021869 0.641558 0.380045 0.66631 -0.587975 -0.314217 0.745354 -8.06899 -245.95785 94.00073 51 'point symmetry operation' ? ? 0.018585 0.92262 -0.385262 -0.368364 -0.351905 -0.860506 -0.929496 0.157909 0.33332 142.21471 317.64492 246.09659 52 'point symmetry operation' ? ? 0.795938 0.068512 -0.601489 -0.508829 -0.462599 -0.726014 -0.327989 0.883917 -0.333339 222.03005 268.00001 492.1785 53 'point symmetry operation' ? ? 0.449484 -0.893021 -0.021874 -0.67249 -0.322163 -0.666309 0.587981 0.314205 -0.745354 8.07801 245.96158 644.26479 54 'point symmetry operation' ? ? -0.541989 -0.633173 0.552575 -0.633173 -0.124675 -0.763903 0.552575 -0.763903 -0.333336 -203.96697 281.98599 492.17738 55 'point symmetry operation' ? ? -0.808299 0.488954 0.327989 -0.445213 -0.143057 -0.883923 -0.385277 -0.860499 0.333321 -121.06593 326.28873 246.0959 56 'point symmetry operation' ? ? -0.338633 -0.723549 -0.601502 -0.146205 0.671969 -0.726004 0.92949 -0.157906 -0.333337 222.04043 267.99288 492.17529 57 'point symmetry operation' ? ? -0.808299 -0.445213 -0.385277 0.488954 -0.143057 -0.860499 0.327989 -0.883923 0.333321 142.22569 317.63876 246.09338 58 'point symmetry operation' ? ? -0.801913 0.105857 -0.587987 0.105857 -0.94343 -0.314219 -0.587987 -0.314219 0.745344 217.05167 115.99178 94.00466 59 'point symmetry operation' ? ? -0.328301 0.168101 -0.929495 -0.766069 -0.623062 0.157896 -0.552591 0.763895 0.333329 343.11141 -58.27879 246.09057 60 'point symmetry operation' ? ? -0.041977 -0.3445 -0.937848 -0.921852 0.37531 -0.096601 0.385262 0.860501 -0.333332 346.19463 35.66306 492.17356 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H25 N O2' _chem_comp.formula_weight 215.332 _chem_comp.id DOA _chem_comp.mon_nstd_flag . _chem_comp.name '12-AMINO-DODECANOIC ACID' _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C1 DOA sing 83 n n N H DOA sing 84 n n N H2 DOA sing 85 n n C1 C2 DOA sing 86 n n C1 HA1 DOA sing 87 n n C1 HA2 DOA sing 88 n n C2 C3 DOA sing 89 n n C2 H21 DOA sing 90 n n C2 H22 DOA sing 91 n n C3 C4 DOA sing 92 n n C3 H31 DOA sing 93 n n C3 H32 DOA sing 94 n n C4 C5 DOA sing 95 n n C4 H41 DOA sing 96 n n C4 H42 DOA sing 97 n n C5 C6 DOA sing 98 n n C5 H51 DOA sing 99 n n C5 H52 DOA sing 100 n n C6 C7 DOA sing 101 n n C6 H61 DOA sing 102 n n C6 H62 DOA sing 103 n n C7 C8 DOA sing 104 n n C7 H71 DOA sing 105 n n C7 H72 DOA sing 106 n n C8 C9 DOA sing 107 n n C8 H81 DOA sing 108 n n C8 H82 DOA sing 109 n n C9 C10 DOA sing 110 n n C9 H91 DOA sing 111 n n C9 H92 DOA sing 112 n n C10 CA2 DOA sing 113 n n C10 H101 DOA sing 114 n n C10 H102 DOA sing 115 n n CA2 C DOA sing 116 n n CA2 HA21 DOA sing 117 n n CA2 HA22 DOA sing 118 n n C O DOA doub 119 n n C OXT DOA sing 120 n n OXT HXT DOA sing 121 n n # _atom_sites.entry_id 1H8T _atom_sites.fract_transf_matrix[1][1] 0.003324 _atom_sites.fract_transf_matrix[1][2] 0.001919 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003838 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.000677 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 DOA A 1 1000 1000 DOA DOA . F 6 MYR D 1 3500 3500 MYR MYR . G 7 HOH A 1 2001 2001 HOH HOH . G 7 HOH A 2 2002 2002 HOH HOH . H 7 HOH B 1 2001 2001 HOH HOH . H 7 HOH B 2 2002 2002 HOH HOH . H 7 HOH B 3 2003 2003 HOH HOH . H 7 HOH B 4 2004 2004 HOH HOH . I 7 HOH C 1 4001 4001 HOH HOH . I 7 HOH C 2 4002 4002 HOH HOH . I 7 HOH C 3 4003 4003 HOH HOH . I 7 HOH C 4 4004 4004 HOH HOH . I 7 HOH C 5 4005 4005 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N DOA . . . E 5 86.739 21.008 466.234 1 19.24 ? N DOA 1000 A 1 HETATM 2 C C1 DOA . . . E 5 86.32 19.54 466.172 1 31.64 ? C1 DOA 1000 A 1 HETATM 3 C C2 DOA . . . E 5 87.286 18.635 465.4 1 23.52 ? C2 DOA 1000 A 1 HETATM 4 C C3 DOA . . . E 5 86.529 17.336 465.306 1 12.45 ? C3 DOA 1000 A 1 HETATM 5 C C4 DOA . . . E 5 87.238 16.232 464.571 1 11.28 ? C4 DOA 1000 A 1 HETATM 6 C C5 DOA . . . E 5 86.525 15.053 465.134 1 14.1 ? C5 DOA 1000 A 1 HETATM 7 C C6 DOA . . . E 5 86.776 13.74 464.466 1 9.32 ? C6 DOA 1000 A 1 HETATM 8 C C7 DOA . . . E 5 85.959 12.814 465.318 1 7.9 ? C7 DOA 1000 A 1 HETATM 9 C C8 DOA . . . E 5 86.111 11.456 464.848 1 18.01 ? C8 DOA 1000 A 1 HETATM 10 C C9 DOA . . . E 5 85.337 10.508 465.707 1 20.82 ? C9 DOA 1000 A 1 HETATM 11 C C10 DOA . . . E 5 86.312 9.385 465.926 1 21.62 ? C10 DOA 1000 A 1 HETATM 12 C CA2 DOA . . . E 5 85.69 8.304 466.762 1 24.44 ? CA2 DOA 1000 A 1 HETATM 13 C C DOA . . . E 5 86.306 6.894 466.536 1 41.95 ? C DOA 1000 A 1 HETATM 14 O O DOA . . . E 5 85.549 5.918 466.466 1 41.7 ? O DOA 1000 A 1 HETATM 15 O OXT DOA . . . E 5 87.571 6.752 466.431 1 52.41 ? OXT DOA 1000 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 15 #