data_1H9U # _model_server_result.job_id -stir7YggcUEkjUcaLOHcw _model_server_result.datetime_utc '2024-12-27 07:53:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1h9u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1}' # _entry.id 1H9U # _exptl.entry_id 1H9U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.493 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '6-[1-(3,5,5,8,8-PENTAMETHYL-5,6,7,8-TETRAHYDRONAPHTHALEN-2-YL)CYCLOPROPYL]PYRIDINE-3-CARBOXYLIC ACID' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 122.56 _cell.angle_gamma 90 _cell.entry_id 1H9U _cell.length_a 123.886 _cell.length_b 106.882 _cell.length_c 100.587 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1H9U _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_658 -x+1,y,-z+3 -1 0 0 0 1 0 0 0 -1 -38.516493 0 254.332718 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 H N N ? 2 K N N ? 2 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 F NI NI . A NI 2 1_555 G CL CL . A CL 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? metalc ? metalc2 F NI NI . A NI 2 1_555 A NE2 HIS 106 A HIS 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc3 I NI NI . B NI 2 1_555 J CL CL . B CL 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc4 I NI NI . B NI 2 1_555 B ND1 HIS 104 B HIS 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc5 I NI NI . B NI 2 1_555 B NE2 HIS 106 B HIS 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc6 L NI NI . C NI 2 1_555 C ND1 HIS 104 C HIS 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? metalc ? metalc7 L NI NI . C NI 2 1_555 C NE2 HIS 106 C HIS 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc8 N NI NI . D NI 2 1_555 D ND1 HIS 104 D HIS 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? metalc ? metalc9 N NI NI . D NI 2 1_555 D NE2 HIS 106 D HIS 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? # _chem_comp.formula 'C24 H29 N O2' _chem_comp.formula_weight 363.493 _chem_comp.id LG2 _chem_comp.mon_nstd_flag . _chem_comp.name '6-[1-(3,5,5,8,8-PENTAMETHYL-5,6,7,8-TETRAHYDRONAPHTHALEN-2-YL)CYCLOPROPYL]PYRIDINE-3-CARBOXYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 LG2 doub 194 n y C1 C6 LG2 sing 195 n y C1 C10 LG2 sing 196 n n C2 C3 LG2 sing 197 n y C2 HC2 LG2 sing 198 n n C3 C4 LG2 doub 199 n y C3 C11 LG2 sing 200 n n C4 C5 LG2 sing 201 n y C4 C27 LG2 sing 202 n n C5 C6 LG2 doub 203 n y C5 HC5 LG2 sing 204 n n C6 C7 LG2 sing 205 n n C7 C8 LG2 sing 206 n n C7 C23 LG2 sing 207 n n C7 C24 LG2 sing 208 n n C8 C9 LG2 sing 209 n n C8 HC81 LG2 sing 210 n n C8 HC82 LG2 sing 211 n n C9 C10 LG2 sing 212 n n C9 HC91 LG2 sing 213 n n C9 HC92 LG2 sing 214 n n C10 C25 LG2 sing 215 n n C10 C26 LG2 sing 216 n n C11 C12 LG2 sing 217 n n C11 C21 LG2 sing 218 n n C11 C22 LG2 sing 219 n n C12 N13 LG2 doub 220 n y C12 C17 LG2 sing 221 n y N13 C14 LG2 sing 222 n y C14 C15 LG2 doub 223 n y C14 HC41 LG2 sing 224 n n C15 C16 LG2 sing 225 n y C15 C18 LG2 sing 226 n n C16 C17 LG2 doub 227 n y C16 HC61 LG2 sing 228 n n C17 HC71 LG2 sing 229 n n C18 O19 LG2 doub 230 n n C18 O20 LG2 sing 231 n n O20 HO02 LG2 sing 232 n n C21 C22 LG2 sing 233 n n C21 H211 LG2 sing 234 n n C21 H212 LG2 sing 235 n n C22 H221 LG2 sing 236 n n C22 H222 LG2 sing 237 n n C23 H231 LG2 sing 238 n n C23 H232 LG2 sing 239 n n C23 H233 LG2 sing 240 n n C24 H241 LG2 sing 241 n n C24 H242 LG2 sing 242 n n C24 H243 LG2 sing 243 n n C25 H251 LG2 sing 244 n n C25 H252 LG2 sing 245 n n C25 H253 LG2 sing 246 n n C26 H261 LG2 sing 247 n n C26 H262 LG2 sing 248 n n C26 H263 LG2 sing 249 n n C27 H271 LG2 sing 250 n n C27 H272 LG2 sing 251 n n C27 H273 LG2 sing 252 n n # _atom_sites.entry_id 1H9U _atom_sites.fract_transf_matrix[1][1] 0.008072 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005154 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009356 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011795 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 LG2 A 1 1 1 LG2 LG2 . F 3 NI A 1 2 2 NI NI . G 4 CL A 1 3 3 CL CL . H 2 LG2 B 1 1 1 LG2 LG2 . I 3 NI B 1 2 2 NI NI . J 4 CL B 1 3 3 CL CL . K 2 LG2 C 1 1 1 LG2 LG2 . L 3 NI C 1 2 2 NI NI . M 2 LG2 D 1 1 1 LG2 LG2 . N 3 NI D 1 2 2 NI NI . O 5 HOH A 1 2001 2001 HOH HOH . P 5 HOH B 1 2001 2001 HOH HOH . Q 5 HOH C 1 2001 2001 HOH HOH . R 5 HOH D 1 2001 2001 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LG2 . . . H 2 -40.088 -30.455 136.399 1 31.46 ? C1 LG2 1 B 1 HETATM 2 C C2 LG2 . . . H 2 -41.103 -31.015 137.234 1 29.44 ? C2 LG2 1 B 1 HETATM 3 C C3 LG2 . . . H 2 -40.82 -31.655 138.479 1 29.9 ? C3 LG2 1 B 1 HETATM 4 C C4 LG2 . . . H 2 -39.399 -31.737 138.923 1 32.31 ? C4 LG2 1 B 1 HETATM 5 C C5 LG2 . . . H 2 -38.363 -31.171 138.075 1 32.93 ? C5 LG2 1 B 1 HETATM 6 C C6 LG2 . . . H 2 -38.687 -30.53 136.821 1 33.03 ? C6 LG2 1 B 1 HETATM 7 C C7 LG2 . . . H 2 -37.571 -29.932 135.943 1 35.17 ? C7 LG2 1 B 1 HETATM 8 C C8 LG2 . . . H 2 -38.176 -28.944 134.901 1 35.65 ? C8 LG2 1 B 1 HETATM 9 C C9 LG2 . . . H 2 -39.294 -29.656 134.134 1 33.53 ? C9 LG2 1 B 1 HETATM 10 C C10 LG2 . . . H 2 -40.493 -29.778 135.083 1 33.32 ? C10 LG2 1 B 1 HETATM 11 C C11 LG2 . . . H 2 -42.028 -32.18 139.222 1 29.42 ? C11 LG2 1 B 1 HETATM 12 C C12 LG2 . . . H 2 -42.719 -31.233 140.133 1 27.43 ? C12 LG2 1 B 1 HETATM 13 N N13 LG2 . . . H 2 -42.222 -29.954 140.258 1 29.5 ? N13 LG2 1 B 1 HETATM 14 C C14 LG2 . . . H 2 -42.839 -29.037 141.078 1 28.79 ? C14 LG2 1 B 1 HETATM 15 C C15 LG2 . . . H 2 -44.021 -29.383 141.825 1 28.18 ? C15 LG2 1 B 1 HETATM 16 C C16 LG2 . . . H 2 -44.551 -30.711 141.708 1 28.52 ? C16 LG2 1 B 1 HETATM 17 C C17 LG2 . . . H 2 -43.885 -31.639 140.85 1 25.41 ? C17 LG2 1 B 1 HETATM 18 C C18 LG2 . . . H 2 -44.711 -28.363 142.727 1 27.77 ? C18 LG2 1 B 1 HETATM 19 O O19 LG2 . . . H 2 -45.733 -28.669 143.351 1 24.38 ? O19 LG2 1 B 1 HETATM 20 O O20 LG2 . . . H 2 -44.218 -27.123 142.845 1 26.22 ? O20 LG2 1 B 1 HETATM 21 C C21 LG2 . . . H 2 -41.852 -33.561 139.839 1 29.83 ? C21 LG2 1 B 1 HETATM 22 C C22 LG2 . . . H 2 -42.775 -33.37 138.667 1 28.26 ? C22 LG2 1 B 1 HETATM 23 C C23 LG2 . . . H 2 -36.852 -31.079 135.217 1 32.41 ? C23 LG2 1 B 1 HETATM 24 C C24 LG2 . . . H 2 -36.499 -29.162 136.736 1 35.21 ? C24 LG2 1 B 1 HETATM 25 C C25 LG2 . . . H 2 -41.044 -28.383 135.403 1 34.4 ? C25 LG2 1 B 1 HETATM 26 C C26 LG2 . . . H 2 -41.598 -30.53 134.343 1 34.84 ? C26 LG2 1 B 1 HETATM 27 C C27 LG2 . . . H 2 -38.962 -32.373 140.214 1 34.21 ? C27 LG2 1 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #