data_1H9U # _model_server_result.job_id hH307d7HFe_zpA-iblcQ9A _model_server_result.datetime_utc '2024-12-27 07:32:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1h9u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":1}' # _entry.id 1H9U # _exptl.entry_id 1H9U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.493 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '6-[1-(3,5,5,8,8-PENTAMETHYL-5,6,7,8-TETRAHYDRONAPHTHALEN-2-YL)CYCLOPROPYL]PYRIDINE-3-CARBOXYLIC ACID' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 122.56 _cell.angle_gamma 90 _cell.entry_id 1H9U _cell.length_a 123.886 _cell.length_b 106.882 _cell.length_c 100.587 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1H9U _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_658 -x+1,y,-z+3 -1 0 0 0 1 0 0 0 -1 -38.516493 0 254.332718 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 H N N ? 2 K N N ? 2 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 F NI NI . A NI 2 1_555 G CL CL . A CL 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? metalc ? metalc2 F NI NI . A NI 2 1_555 A NE2 HIS 106 A HIS 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc3 I NI NI . B NI 2 1_555 J CL CL . B CL 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc4 I NI NI . B NI 2 1_555 B ND1 HIS 104 B HIS 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc5 I NI NI . B NI 2 1_555 B NE2 HIS 106 B HIS 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc6 L NI NI . C NI 2 1_555 C ND1 HIS 104 C HIS 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? metalc ? metalc7 L NI NI . C NI 2 1_555 C NE2 HIS 106 C HIS 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc8 N NI NI . D NI 2 1_555 D ND1 HIS 104 D HIS 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? metalc ? metalc9 N NI NI . D NI 2 1_555 D NE2 HIS 106 D HIS 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? # _chem_comp.formula 'C24 H29 N O2' _chem_comp.formula_weight 363.493 _chem_comp.id LG2 _chem_comp.mon_nstd_flag . _chem_comp.name '6-[1-(3,5,5,8,8-PENTAMETHYL-5,6,7,8-TETRAHYDRONAPHTHALEN-2-YL)CYCLOPROPYL]PYRIDINE-3-CARBOXYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 LG2 doub 194 n y C1 C6 LG2 sing 195 n y C1 C10 LG2 sing 196 n n C2 C3 LG2 sing 197 n y C2 HC2 LG2 sing 198 n n C3 C4 LG2 doub 199 n y C3 C11 LG2 sing 200 n n C4 C5 LG2 sing 201 n y C4 C27 LG2 sing 202 n n C5 C6 LG2 doub 203 n y C5 HC5 LG2 sing 204 n n C6 C7 LG2 sing 205 n n C7 C8 LG2 sing 206 n n C7 C23 LG2 sing 207 n n C7 C24 LG2 sing 208 n n C8 C9 LG2 sing 209 n n C8 HC81 LG2 sing 210 n n C8 HC82 LG2 sing 211 n n C9 C10 LG2 sing 212 n n C9 HC91 LG2 sing 213 n n C9 HC92 LG2 sing 214 n n C10 C25 LG2 sing 215 n n C10 C26 LG2 sing 216 n n C11 C12 LG2 sing 217 n n C11 C21 LG2 sing 218 n n C11 C22 LG2 sing 219 n n C12 N13 LG2 doub 220 n y C12 C17 LG2 sing 221 n y N13 C14 LG2 sing 222 n y C14 C15 LG2 doub 223 n y C14 HC41 LG2 sing 224 n n C15 C16 LG2 sing 225 n y C15 C18 LG2 sing 226 n n C16 C17 LG2 doub 227 n y C16 HC61 LG2 sing 228 n n C17 HC71 LG2 sing 229 n n C18 O19 LG2 doub 230 n n C18 O20 LG2 sing 231 n n O20 HO02 LG2 sing 232 n n C21 C22 LG2 sing 233 n n C21 H211 LG2 sing 234 n n C21 H212 LG2 sing 235 n n C22 H221 LG2 sing 236 n n C22 H222 LG2 sing 237 n n C23 H231 LG2 sing 238 n n C23 H232 LG2 sing 239 n n C23 H233 LG2 sing 240 n n C24 H241 LG2 sing 241 n n C24 H242 LG2 sing 242 n n C24 H243 LG2 sing 243 n n C25 H251 LG2 sing 244 n n C25 H252 LG2 sing 245 n n C25 H253 LG2 sing 246 n n C26 H261 LG2 sing 247 n n C26 H262 LG2 sing 248 n n C26 H263 LG2 sing 249 n n C27 H271 LG2 sing 250 n n C27 H272 LG2 sing 251 n n C27 H273 LG2 sing 252 n n # _atom_sites.entry_id 1H9U _atom_sites.fract_transf_matrix[1][1] 0.008072 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005154 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009356 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011795 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 LG2 A 1 1 1 LG2 LG2 . F 3 NI A 1 2 2 NI NI . G 4 CL A 1 3 3 CL CL . H 2 LG2 B 1 1 1 LG2 LG2 . I 3 NI B 1 2 2 NI NI . J 4 CL B 1 3 3 CL CL . K 2 LG2 C 1 1 1 LG2 LG2 . L 3 NI C 1 2 2 NI NI . M 2 LG2 D 1 1 1 LG2 LG2 . N 3 NI D 1 2 2 NI NI . O 5 HOH A 1 2001 2001 HOH HOH . P 5 HOH B 1 2001 2001 HOH HOH . Q 5 HOH C 1 2001 2001 HOH HOH . R 5 HOH D 1 2001 2001 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LG2 . . . M 2 -9.812 -51.046 106.207 1 37.38 ? C1 LG2 1 D 1 HETATM 2 C C2 LG2 . . . M 2 -8.915 -50.463 105.249 1 34.61 ? C2 LG2 1 D 1 HETATM 3 C C3 LG2 . . . M 2 -7.706 -49.806 105.614 1 33.52 ? C3 LG2 1 D 1 HETATM 4 C C4 LG2 . . . M 2 -7.362 -49.72 107.076 1 36.59 ? C4 LG2 1 D 1 HETATM 5 C C5 LG2 . . . M 2 -8.267 -50.301 108.034 1 36 ? C5 LG2 1 D 1 HETATM 6 C C6 LG2 . . . M 2 -9.488 -50.965 107.626 1 37.41 ? C6 LG2 1 D 1 HETATM 7 C C7 LG2 . . . M 2 -10.418 -51.584 108.683 1 38.59 ? C7 LG2 1 D 1 HETATM 8 C C8 LG2 . . . M 2 -11.355 -52.624 108.048 1 39.25 ? C8 LG2 1 D 1 HETATM 9 C C9 LG2 . . . M 2 -12.096 -51.946 106.877 1 40.63 ? C9 LG2 1 D 1 HETATM 10 C C10 LG2 . . . M 2 -11.092 -51.765 105.718 1 38.9 ? C10 LG2 1 D 1 HETATM 11 C C11 LG2 . . . M 2 -6.9 -49.275 104.448 1 33.15 ? C11 LG2 1 D 1 HETATM 12 C C12 LG2 . . . M 2 -5.996 -50.234 103.741 1 33.16 ? C12 LG2 1 D 1 HETATM 13 N N13 LG2 . . . M 2 -6.009 -51.563 104.11 1 33.92 ? N13 LG2 1 D 1 HETATM 14 C C14 LG2 . . . M 2 -5.209 -52.474 103.457 1 33.64 ? C14 LG2 1 D 1 HETATM 15 C C15 LG2 . . . M 2 -4.328 -52.079 102.371 1 32.56 ? C15 LG2 1 D 1 HETATM 16 C C16 LG2 . . . M 2 -4.294 -50.705 101.978 1 32.1 ? C16 LG2 1 D 1 HETATM 17 C C17 LG2 . . . M 2 -5.135 -49.777 102.671 1 31.73 ? C17 LG2 1 D 1 HETATM 18 C C18 LG2 . . . M 2 -3.445 -53.108 101.645 1 32.85 ? C18 LG2 1 D 1 HETATM 19 O O19 LG2 . . . M 2 -2.697 -52.766 100.728 1 29.92 ? O19 LG2 1 D 1 HETATM 20 O O20 LG2 . . . M 2 -3.476 -54.399 102.003 1 33.1 ? O20 LG2 1 D 1 HETATM 21 C C21 LG2 . . . M 2 -6.235 -47.926 104.667 1 33.47 ? C21 LG2 1 D 1 HETATM 22 C C22 LG2 . . . M 2 -7.402 -48.056 103.715 1 31.29 ? C22 LG2 1 D 1 HETATM 23 C C23 LG2 . . . M 2 -11.248 -50.463 109.323 1 37.29 ? C23 LG2 1 D 1 HETATM 24 C C24 LG2 . . . M 2 -9.651 -52.29 109.808 1 40.98 ? C24 LG2 1 D 1 HETATM 25 C C25 LG2 . . . M 2 -10.686 -53.146 105.185 1 37.17 ? C25 LG2 1 D 1 HETATM 26 C C26 LG2 . . . M 2 -11.817 -51.032 104.578 1 38.07 ? C26 LG2 1 D 1 HETATM 27 C C27 LG2 . . . M 2 -6.106 -49.066 107.633 1 38.42 ? C27 LG2 1 D 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #