data_1HAC # _model_server_result.job_id MMvVO6z9-pR8l7jYEqGL-A _model_server_result.datetime_utc '2024-10-14 04:21:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1hac # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":200}' # _entry.id 1HAC # _exptl.entry_id 1HAC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1HAC _cell.length_a 86.84 _cell.length_b 87.11 _cell.length_c 97.63 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HAC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N ? 3 J N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E FE HEM . A HEM 200 1_555 A NE2 HIS 87 A HIS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc2 E FE HEM . A HEM 200 1_555 F C CMO . A CMO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.854 ? metalc ? metalc3 G FE HEM . B HEM 200 1_555 B NE2 HIS 92 B HIS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc4 G FE HEM . B HEM 200 1_555 H C CMO . B CMO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.864 ? metalc ? metalc5 G FE HEM . B HEM 200 1_555 H O CMO . B CMO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? covale ? covale1 I C2' NDD . B NDD 400 1_555 B NZ LYS 82 B LYS 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 I C6' NDD . B NDD 400 1_555 D NZ LYS 82 D LYS 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? metalc ? metalc6 J FE HEM . C HEM 200 1_555 C NE2 HIS 87 C HIS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc7 J FE HEM . C HEM 200 1_555 K C CMO . C CMO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.854 ? metalc ? metalc8 L FE HEM . D HEM 200 1_555 D NE2 HIS 92 D HIS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc9 L FE HEM . D HEM 200 1_555 M C CMO . D CMO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.862 ? metalc ? metalc10 E FE HEM . A HEM 200 1_555 F O CMO . A CMO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.087 ? metalc ? metalc11 J FE HEM . C HEM 200 1_555 K O CMO . C CMO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.013 ? metalc ? metalc12 L FE HEM . D HEM 200 1_555 M O CMO . D CMO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.976 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # _atom_sites.entry_id 1HAC _atom_sites.fract_transf_matrix[1][1] 0.011515 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01148 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010243 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HEM A 1 200 200 HEM HEM . F 4 CMO A 1 201 200 CMO CMO . G 3 HEM B 1 200 200 HEM HEM . H 4 CMO B 1 201 200 CMO CMO . I 5 NDD B 1 400 400 NDD NDD . J 3 HEM C 1 200 200 HEM HEM . K 4 CMO C 1 201 200 CMO CMO . L 3 HEM D 1 200 200 HEM HEM . M 4 CMO D 1 201 200 CMO CMO . N 6 HOH A 1 202 10 HOH HOH . N 6 HOH A 2 203 13 HOH HOH . N 6 HOH A 3 204 18 HOH HOH . N 6 HOH A 4 205 22 HOH HOH . N 6 HOH A 5 206 26 HOH HOH . N 6 HOH A 6 207 27 HOH HOH . N 6 HOH A 7 208 36 HOH HOH . O 6 HOH B 1 401 1 HOH HOH . O 6 HOH B 2 402 2 HOH HOH . O 6 HOH B 3 403 4 HOH HOH . O 6 HOH B 4 404 21 HOH HOH . O 6 HOH B 5 405 40 HOH HOH . O 6 HOH B 6 406 43 HOH HOH . O 6 HOH B 7 407 44 HOH HOH . P 6 HOH C 1 202 3 HOH HOH . P 6 HOH C 2 203 7 HOH HOH . P 6 HOH C 3 204 9 HOH HOH . P 6 HOH C 4 205 11 HOH HOH . P 6 HOH C 5 206 14 HOH HOH . P 6 HOH C 6 207 19 HOH HOH . P 6 HOH C 7 208 23 HOH HOH . P 6 HOH C 8 209 28 HOH HOH . P 6 HOH C 9 210 29 HOH HOH . P 6 HOH C 10 211 32 HOH HOH . P 6 HOH C 11 212 33 HOH HOH . P 6 HOH C 12 213 35 HOH HOH . P 6 HOH C 13 214 37 HOH HOH . P 6 HOH C 14 215 38 HOH HOH . Q 6 HOH D 1 202 5 HOH HOH . Q 6 HOH D 2 203 6 HOH HOH . Q 6 HOH D 3 204 8 HOH HOH . Q 6 HOH D 4 205 12 HOH HOH . Q 6 HOH D 5 206 15 HOH HOH . Q 6 HOH D 6 207 16 HOH HOH . Q 6 HOH D 7 208 17 HOH HOH . Q 6 HOH D 8 209 20 HOH HOH . Q 6 HOH D 9 210 24 HOH HOH . Q 6 HOH D 10 211 25 HOH HOH . Q 6 HOH D 11 212 30 HOH HOH . Q 6 HOH D 12 213 31 HOH HOH . Q 6 HOH D 13 214 34 HOH HOH . Q 6 HOH D 14 215 39 HOH HOH . Q 6 HOH D 15 216 41 HOH HOH . Q 6 HOH D 16 217 42 HOH HOH . Q 6 HOH D 17 218 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . E 3 58.258 -10.57 -14.852 1 1 ? CHA HEM 200 A 1 HETATM 2 C CHB HEM . . . E 3 61.626 -8.984 -11.767 1 1 ? CHB HEM 200 A 1 HETATM 3 C CHC HEM . . . E 3 58.776 -5.346 -10.468 1 11.1 ? CHC HEM 200 A 1 HETATM 4 C CHD HEM . . . E 3 55.254 -7.131 -13.227 1 1.61 ? CHD HEM 200 A 1 HETATM 5 C C1A HEM . . . E 3 59.398 -10.462 -14.096 1 33.54 ? C1A HEM 200 A 1 HETATM 6 C C2A HEM . . . E 3 60.458 -11.428 -14.086 1 10.74 ? C2A HEM 200 A 1 HETATM 7 C C3A HEM . . . E 3 61.417 -10.996 -13.262 1 38.54 ? C3A HEM 200 A 1 HETATM 8 C C4A HEM . . . E 3 60.978 -9.734 -12.713 1 27.72 ? C4A HEM 200 A 1 HETATM 9 C CMA HEM . . . E 3 62.756 -11.653 -12.881 1 74.88 ? CMA HEM 200 A 1 HETATM 10 C CAA HEM . . . E 3 60.484 -12.7 -14.936 1 10.87 ? CAA HEM 200 A 1 HETATM 11 C CBA HEM . . . E 3 61.467 -12.656 -16.116 1 46.67 ? CBA HEM 200 A 1 HETATM 12 C CGA HEM . . . E 3 61.465 -13.881 -16.981 1 100 ? CGA HEM 200 A 1 HETATM 13 O O1A HEM . . . E 3 60.521 -14.697 -16.813 1 77.37 ? O1A HEM 200 A 1 HETATM 14 O O2A HEM . . . E 3 62.415 -13.95 -17.803 1 100 ? O2A HEM 200 A 1 HETATM 15 C C1B HEM . . . E 3 61.113 -7.907 -11.083 1 6.02 ? C1B HEM 200 A 1 HETATM 16 C C2B HEM . . . E 3 61.728 -7.23 -9.952 1 7.01 ? C2B HEM 200 A 1 HETATM 17 C C3B HEM . . . E 3 60.926 -6.239 -9.602 1 35.98 ? C3B HEM 200 A 1 HETATM 18 C C4B HEM . . . E 3 59.81 -6.257 -10.52 1 2.84 ? C4B HEM 200 A 1 HETATM 19 C CMB HEM . . . E 3 63.083 -7.654 -9.338 1 29.98 ? CMB HEM 200 A 1 HETATM 20 C CAB HEM . . . E 3 61.057 -5.194 -8.487 1 16.21 ? CAB HEM 200 A 1 HETATM 21 C CBB HEM . . . E 3 62.26 -4.99 -7.951 1 1 ? CBB HEM 200 A 1 HETATM 22 C C1C HEM . . . E 3 57.553 -5.559 -11.047 1 33.67 ? C1C HEM 200 A 1 HETATM 23 C C2C HEM . . . E 3 56.386 -4.771 -10.747 1 11.12 ? C2C HEM 200 A 1 HETATM 24 C C3C HEM . . . E 3 55.4 -5.25 -11.509 1 12.31 ? C3C HEM 200 A 1 HETATM 25 C C4C HEM . . . E 3 55.936 -6.339 -12.317 1 1 ? C4C HEM 200 A 1 HETATM 26 C CMC HEM . . . E 3 56.414 -3.629 -9.704 1 1 ? CMC HEM 200 A 1 HETATM 27 C CAC HEM . . . E 3 53.915 -4.824 -11.576 1 1 ? CAC HEM 200 A 1 HETATM 28 C CBC HEM . . . E 3 53.087 -5.263 -10.634 1 29.45 ? CBC HEM 200 A 1 HETATM 29 C C1D HEM . . . E 3 55.69 -8.247 -13.919 1 3.95 ? C1D HEM 200 A 1 HETATM 30 C C2D HEM . . . E 3 54.945 -9.116 -14.821 1 9.14 ? C2D HEM 200 A 1 HETATM 31 C C3D HEM . . . E 3 55.793 -10.049 -15.246 1 20.51 ? C3D HEM 200 A 1 HETATM 32 C C4D HEM . . . E 3 57.095 -9.822 -14.682 1 23.55 ? C4D HEM 200 A 1 HETATM 33 C CMD HEM . . . E 3 53.452 -9.049 -15.234 1 1 ? CMD HEM 200 A 1 HETATM 34 C CAD HEM . . . E 3 55.46 -11.17 -16.234 1 7.07 ? CAD HEM 200 A 1 HETATM 35 C CBD HEM . . . E 3 55.403 -12.648 -15.796 1 47.73 ? CBD HEM 200 A 1 HETATM 36 C CGD HEM . . . E 3 54.774 -13.472 -16.884 1 87.09 ? CGD HEM 200 A 1 HETATM 37 O O1D HEM . . . E 3 55.122 -13.195 -18.062 1 66.23 ? O1D HEM 200 A 1 HETATM 38 O O2D HEM . . . E 3 53.931 -14.332 -16.532 1 51.14 ? O2D HEM 200 A 1 HETATM 39 N NA HEM . . . E 3 59.715 -9.472 -13.193 1 11.86 ? NA HEM 200 A 1 HETATM 40 N NB HEM . . . E 3 59.916 -7.304 -11.416 1 8.19 ? NB HEM 200 A 1 HETATM 41 N NC HEM . . . E 3 57.274 -6.499 -12.027 1 1.14 ? NC HEM 200 A 1 HETATM 42 N ND HEM . . . E 3 56.976 -8.724 -13.833 1 7.44 ? ND HEM 200 A 1 HETATM 43 FE FE HEM . . . E 3 58.465 -8.027 -12.606 1 12.84 ? FE HEM 200 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #