data_1HAC
#
_model_server_result.job_id            wTJ011G1maBWLxUuM-8Euw 
_model_server_result.datetime_utc      '2024-11-22 04:18:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1hac 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":400}' 
#
_entry.id    1HAC 
#
_exptl.entry_id    1HAC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              216.19 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2,6-DICARBOXYNAPHTHALENE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1HAC 
_cell.length_a            86.84 
_cell.length_b            87.11 
_cell.length_c            97.63 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1HAC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             I 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B NZ LYS 82 B LYS 82 1_555 I C2' NDD . B NDD 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 I C6' NDD . B NDD 400 1_555 D NZ LYS 82 D LYS 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 E FE HEM . A HEM 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? 
metalc ? metalc2 E FE HEM . A HEM 200 1_555 F C CMO . A CMO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.854 ? 
metalc ? metalc3 E FE HEM . A HEM 200 1_555 F O CMO . A CMO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.087 ? 
metalc ? metalc4 B NE2 HIS 92 B HIS 92 1_555 G FE HEM . B HEM 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? 
metalc ? metalc5 G FE HEM . B HEM 200 1_555 H C CMO . B CMO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.864 ? 
metalc ? metalc6 G FE HEM . B HEM 200 1_555 H O CMO . B CMO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? 
metalc ? metalc7 C NE2 HIS 87 C HIS 87 1_555 J FE HEM . C HEM 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? 
metalc ? metalc8 J FE HEM . C HEM 200 1_555 K C CMO . C CMO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.854 ? 
metalc ? metalc9 J FE HEM . C HEM 200 1_555 K O CMO . C CMO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.013 ? 
metalc ? metalc10 D NE2 HIS 92 D HIS 92 1_555 L FE HEM . D HEM 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? 
metalc ? metalc11 L FE HEM . D HEM 200 1_555 M C CMO . D CMO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.862 ? 
metalc ? metalc12 L FE HEM . D HEM 200 1_555 M O CMO . D CMO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.976 ? 
#
_chem_comp.formula           'C12 H8 O4' 
_chem_comp.formula_weight    216.19 
_chem_comp.id                NDD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2,6-DICARBOXYNAPHTHALENE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NDD doub 299 n y 
C1 C8A NDD sing 300 n y 
C1 H1 NDD sing 301 n n 
C2 C3 NDD sing 302 n y 
C2 C2' NDD sing 303 n n 
C3 C4 NDD doub 304 n y 
C3 H3 NDD sing 305 n n 
C4 C4A NDD sing 306 n y 
C4 H4 NDD sing 307 n n 
C4A C5 NDD doub 308 n y 
C4A C8A NDD sing 309 n y 
C5 C6 NDD sing 310 n y 
C5 H5 NDD sing 311 n n 
C6 C7 NDD doub 312 n y 
C6 C6' NDD sing 313 n n 
C7 C8 NDD sing 314 n y 
C7 H7 NDD sing 315 n n 
C8 C8A NDD doub 316 n y 
C8 H8 NDD sing 317 n n 
C2' O1' NDD doub 318 n n 
C2' O2' NDD sing 319 n n 
O2' HO2 NDD sing 320 n n 
C6' O3' NDD doub 321 n n 
C6' O4' NDD sing 322 n n 
O4' HO4 NDD sing 323 n n 
#
_atom_sites.entry_id                     1HAC 
_atom_sites.fract_transf_matrix[1][1]    0.011515 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01148 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010243 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 HEM A 1 200 200 HEM HEM . 
F 4 CMO A 1 201 200 CMO CMO . 
G 3 HEM B 1 200 200 HEM HEM . 
H 4 CMO B 1 201 200 CMO CMO . 
I 5 NDD B 1 400 400 NDD NDD . 
J 3 HEM C 1 200 200 HEM HEM . 
K 4 CMO C 1 201 200 CMO CMO . 
L 3 HEM D 1 200 200 HEM HEM . 
M 4 CMO D 1 201 200 CMO CMO . 
N 6 HOH A 1 202 10 HOH HOH . 
N 6 HOH A 2 203 13 HOH HOH . 
N 6 HOH A 3 204 18 HOH HOH . 
N 6 HOH A 4 205 22 HOH HOH . 
N 6 HOH A 5 206 26 HOH HOH . 
N 6 HOH A 6 207 27 HOH HOH . 
N 6 HOH A 7 208 36 HOH HOH . 
O 6 HOH B 1 401 1 HOH HOH . 
O 6 HOH B 2 402 2 HOH HOH . 
O 6 HOH B 3 403 4 HOH HOH . 
O 6 HOH B 4 404 21 HOH HOH . 
O 6 HOH B 5 405 40 HOH HOH . 
O 6 HOH B 6 406 43 HOH HOH . 
O 6 HOH B 7 407 44 HOH HOH . 
P 6 HOH C 1 202 3 HOH HOH . 
P 6 HOH C 2 203 7 HOH HOH . 
P 6 HOH C 3 204 9 HOH HOH . 
P 6 HOH C 4 205 11 HOH HOH . 
P 6 HOH C 5 206 14 HOH HOH . 
P 6 HOH C 6 207 19 HOH HOH . 
P 6 HOH C 7 208 23 HOH HOH . 
P 6 HOH C 8 209 28 HOH HOH . 
P 6 HOH C 9 210 29 HOH HOH . 
P 6 HOH C 10 211 32 HOH HOH . 
P 6 HOH C 11 212 33 HOH HOH . 
P 6 HOH C 12 213 35 HOH HOH . 
P 6 HOH C 13 214 37 HOH HOH . 
P 6 HOH C 14 215 38 HOH HOH . 
Q 6 HOH D 1 202 5 HOH HOH . 
Q 6 HOH D 2 203 6 HOH HOH . 
Q 6 HOH D 3 204 8 HOH HOH . 
Q 6 HOH D 4 205 12 HOH HOH . 
Q 6 HOH D 5 206 15 HOH HOH . 
Q 6 HOH D 6 207 16 HOH HOH . 
Q 6 HOH D 7 208 17 HOH HOH . 
Q 6 HOH D 8 209 20 HOH HOH . 
Q 6 HOH D 9 210 24 HOH HOH . 
Q 6 HOH D 10 211 25 HOH HOH . 
Q 6 HOH D 11 212 30 HOH HOH . 
Q 6 HOH D 12 213 31 HOH HOH . 
Q 6 HOH D 13 214 34 HOH HOH . 
Q 6 HOH D 14 215 39 HOH HOH . 
Q 6 HOH D 15 216 41 HOH HOH . 
Q 6 HOH D 16 217 42 HOH HOH . 
Q 6 HOH D 17 218 45 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NDD . . . I 5 33.957 17.848 4.815 1 15.25 ? C1 NDD 400 B 1 
HETATM 2 C C2 NDD . . . I 5 33.829 17.04 5.967 1 9.06 ? C2 NDD 400 B 1 
HETATM 3 C C3 NDD . . . I 5 33.32 15.754 5.775 1 12.17 ? C3 NDD 400 B 1 
HETATM 4 C C4 NDD . . . I 5 32.974 15.262 4.517 1 43.48 ? C4 NDD 400 B 1 
HETATM 5 C C4A NDD . . . I 5 33.103 16.084 3.392 1 34.95 ? C4A NDD 400 B 1 
HETATM 6 C C5 NDD . . . I 5 32.787 15.58 2.121 1 20.77 ? C5 NDD 400 B 1 
HETATM 7 C C6 NDD . . . I 5 32.976 16.336 0.959 1 100 ? C6 NDD 400 B 1 
HETATM 8 C C7 NDD . . . I 5 33.482 17.63 1.115 1 25.88 ? C7 NDD 400 B 1 
HETATM 9 C C8 NDD . . . I 5 33.769 18.15 2.383 1 18.93 ? C8 NDD 400 B 1 
HETATM 10 C C8A NDD . . . I 5 33.599 17.381 3.537 1 100 ? C8A NDD 400 B 1 
HETATM 11 C C2' NDD . . . I 5 34.236 17.584 7.334 1 58.55 ? C2' NDD 400 B 1 
HETATM 12 O O1' NDD . . . I 5 34.645 18.736 7.325 1 91.86 ? O1' NDD 400 B 1 
HETATM 13 C C6' NDD . . . I 5 32.636 15.805 -0.42 1 44.64 ? C6' NDD 400 B 1 
HETATM 14 O O3' NDD . . . I 5 32.027 14.74 -0.56 1 78.54 ? O3' NDD 400 B 1 
#
_model_server_stats.io_time_ms              67 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           376 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           14 
#