data_1HAG # _model_server_result.job_id thXQMI3aHmStfYyINuJwHg _model_server_result.datetime_utc '2024-12-26 10:16:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1hag # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":400}' # _entry.id 1HAG # _exptl.entry_id 1HAG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.1 _cell.angle_gamma 90 _cell.entry_id 1HAG _cell.length_a 72.85 _cell.length_b 71.32 _cell.length_c 72.63 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HAG _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 E CYS 1 1_555 A SG CYS 155 E CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 A SG CYS 64 E CYS 42 1_555 A SG CYS 80 E CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? disulf ? disulf3 A SG CYS 209 E CYS 168 1_555 A SG CYS 223 E CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? disulf ? disulf4 A SG CYS 237 E CYS 191 1_555 A SG CYS 267 E CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? covale ? covale1 A ND2 ASN 89 E ASN 60 1_555 C C1 NAG . E NAG 400 1_555 G ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale2 B C GLU 8 I GLU 62 1_555 B N TYS 9 I TYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 B C TYS 9 I TYS 63 1_555 B N LEU 10 I LEU 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1HAG _atom_sites.fract_transf_matrix[1][1] 0.013727 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002693 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014021 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014031 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG E 1 400 400 NAG NAG . D 4 HOH E 1 401 401 HOH HOH . D 4 HOH E 2 402 402 HOH HOH . D 4 HOH E 3 403 403 HOH HOH . D 4 HOH E 4 404 404 HOH HOH . D 4 HOH E 5 405 405 HOH HOH . D 4 HOH E 6 406 406 HOH HOH . D 4 HOH E 7 407 407 HOH HOH . D 4 HOH E 8 408 408 HOH HOH . D 4 HOH E 9 409 409 HOH HOH . D 4 HOH E 10 410 410 HOH HOH . D 4 HOH E 11 411 411 HOH HOH . D 4 HOH E 12 412 412 HOH HOH . D 4 HOH E 13 413 413 HOH HOH . D 4 HOH E 14 414 414 HOH HOH . D 4 HOH E 15 415 415 HOH HOH . D 4 HOH E 16 416 416 HOH HOH . D 4 HOH E 17 417 417 HOH HOH . D 4 HOH E 18 418 418 HOH HOH . D 4 HOH E 19 419 419 HOH HOH . D 4 HOH E 20 420 420 HOH HOH . D 4 HOH E 21 421 421 HOH HOH . D 4 HOH E 22 422 422 HOH HOH . D 4 HOH E 23 423 423 HOH HOH . D 4 HOH E 24 425 425 HOH HOH . D 4 HOH E 25 426 426 HOH HOH . D 4 HOH E 26 427 427 HOH HOH . D 4 HOH E 27 428 428 HOH HOH . D 4 HOH E 28 429 429 HOH HOH . D 4 HOH E 29 430 430 HOH HOH . D 4 HOH E 30 431 431 HOH HOH . D 4 HOH E 31 432 432 HOH HOH . D 4 HOH E 32 433 433 HOH HOH . D 4 HOH E 33 434 434 HOH HOH . D 4 HOH E 34 435 435 HOH HOH . D 4 HOH E 35 436 436 HOH HOH . D 4 HOH E 36 437 437 HOH HOH . D 4 HOH E 37 438 438 HOH HOH . D 4 HOH E 38 439 439 HOH HOH . D 4 HOH E 39 440 440 HOH HOH . D 4 HOH E 40 441 441 HOH HOH . D 4 HOH E 41 442 442 HOH HOH . D 4 HOH E 42 443 443 HOH HOH . D 4 HOH E 43 444 444 HOH HOH . D 4 HOH E 44 445 445 HOH HOH . D 4 HOH E 45 446 446 HOH HOH . D 4 HOH E 46 447 447 HOH HOH . D 4 HOH E 47 448 448 HOH HOH . D 4 HOH E 48 449 449 HOH HOH . D 4 HOH E 49 450 450 HOH HOH . D 4 HOH E 50 451 451 HOH HOH . D 4 HOH E 51 452 452 HOH HOH . D 4 HOH E 52 453 453 HOH HOH . D 4 HOH E 53 454 454 HOH HOH . D 4 HOH E 54 455 455 HOH HOH . D 4 HOH E 55 456 456 HOH HOH . D 4 HOH E 56 457 457 HOH HOH . D 4 HOH E 57 458 458 HOH HOH . D 4 HOH E 58 459 459 HOH HOH . D 4 HOH E 59 460 460 HOH HOH . D 4 HOH E 60 461 461 HOH HOH . D 4 HOH E 61 462 462 HOH HOH . D 4 HOH E 62 463 463 HOH HOH . D 4 HOH E 63 464 464 HOH HOH . D 4 HOH E 64 465 465 HOH HOH . D 4 HOH E 65 466 466 HOH HOH . D 4 HOH E 66 467 467 HOH HOH . D 4 HOH E 67 468 468 HOH HOH . D 4 HOH E 68 469 469 HOH HOH . D 4 HOH E 69 470 470 HOH HOH . D 4 HOH E 70 471 471 HOH HOH . D 4 HOH E 71 472 472 HOH HOH . D 4 HOH E 72 473 473 HOH HOH . D 4 HOH E 73 474 474 HOH HOH . D 4 HOH E 74 475 475 HOH HOH . D 4 HOH E 75 476 476 HOH HOH . D 4 HOH E 76 477 477 HOH HOH . D 4 HOH E 77 478 478 HOH HOH . D 4 HOH E 78 479 479 HOH HOH . D 4 HOH E 79 480 480 HOH HOH . D 4 HOH E 80 481 481 HOH HOH . D 4 HOH E 81 482 482 HOH HOH . D 4 HOH E 82 483 483 HOH HOH . D 4 HOH E 83 484 484 HOH HOH . D 4 HOH E 84 485 485 HOH HOH . D 4 HOH E 85 486 486 HOH HOH . D 4 HOH E 86 488 488 HOH HOH . D 4 HOH E 87 489 489 HOH HOH . D 4 HOH E 88 490 490 HOH HOH . D 4 HOH E 89 493 493 HOH HOH . D 4 HOH E 90 494 494 HOH HOH . D 4 HOH E 91 495 495 HOH HOH . D 4 HOH E 92 496 496 HOH HOH . D 4 HOH E 93 497 497 HOH HOH . D 4 HOH E 94 498 498 HOH HOH . D 4 HOH E 95 500 500 HOH HOH . D 4 HOH E 96 501 501 HOH HOH . D 4 HOH E 97 502 502 HOH HOH . D 4 HOH E 98 503 503 HOH HOH . D 4 HOH E 99 504 504 HOH HOH . D 4 HOH E 100 505 505 HOH HOH . D 4 HOH E 101 506 506 HOH HOH . D 4 HOH E 102 507 507 HOH HOH . D 4 HOH E 103 508 508 HOH HOH . D 4 HOH E 104 509 509 HOH HOH . D 4 HOH E 105 510 510 HOH HOH . D 4 HOH E 106 511 511 HOH HOH . D 4 HOH E 107 512 512 HOH HOH . D 4 HOH E 108 513 513 HOH HOH . D 4 HOH E 109 514 514 HOH HOH . D 4 HOH E 110 515 515 HOH HOH . D 4 HOH E 111 516 516 HOH HOH . D 4 HOH E 112 517 517 HOH HOH . D 4 HOH E 113 518 518 HOH HOH . D 4 HOH E 114 519 519 HOH HOH . D 4 HOH E 115 520 520 HOH HOH . D 4 HOH E 116 521 521 HOH HOH . D 4 HOH E 117 522 522 HOH HOH . D 4 HOH E 118 523 523 HOH HOH . D 4 HOH E 119 524 524 HOH HOH . D 4 HOH E 120 525 525 HOH HOH . D 4 HOH E 121 526 526 HOH HOH . D 4 HOH E 122 527 527 HOH HOH . D 4 HOH E 123 528 528 HOH HOH . D 4 HOH E 124 529 529 HOH HOH . D 4 HOH E 125 531 531 HOH HOH . D 4 HOH E 126 533 533 HOH HOH . D 4 HOH E 127 534 534 HOH HOH . D 4 HOH E 128 535 535 HOH HOH . D 4 HOH E 129 536 536 HOH HOH . D 4 HOH E 130 537 537 HOH HOH . D 4 HOH E 131 538 538 HOH HOH . D 4 HOH E 132 539 539 HOH HOH . D 4 HOH E 133 540 540 HOH HOH . D 4 HOH E 134 541 541 HOH HOH . D 4 HOH E 135 542 542 HOH HOH . D 4 HOH E 136 543 543 HOH HOH . D 4 HOH E 137 544 544 HOH HOH . D 4 HOH E 138 545 545 HOH HOH . D 4 HOH E 139 546 546 HOH HOH . D 4 HOH E 140 548 548 HOH HOH . D 4 HOH E 141 549 549 HOH HOH . D 4 HOH E 142 550 550 HOH HOH . D 4 HOH E 143 551 551 HOH HOH . D 4 HOH E 144 552 552 HOH HOH . D 4 HOH E 145 553 553 HOH HOH . D 4 HOH E 146 554 554 HOH HOH . D 4 HOH E 147 555 555 HOH HOH . D 4 HOH E 148 556 556 HOH HOH . D 4 HOH E 149 557 557 HOH HOH . D 4 HOH E 150 558 558 HOH HOH . D 4 HOH E 151 559 559 HOH HOH . D 4 HOH E 152 560 560 HOH HOH . D 4 HOH E 153 561 561 HOH HOH . D 4 HOH E 154 562 562 HOH HOH . D 4 HOH E 155 563 563 HOH HOH . D 4 HOH E 156 564 564 HOH HOH . D 4 HOH E 157 565 565 HOH HOH . D 4 HOH E 158 566 566 HOH HOH . D 4 HOH E 159 567 567 HOH HOH . D 4 HOH E 160 568 568 HOH HOH . D 4 HOH E 161 569 569 HOH HOH . D 4 HOH E 162 570 570 HOH HOH . D 4 HOH E 163 571 571 HOH HOH . D 4 HOH E 164 572 572 HOH HOH . D 4 HOH E 165 573 573 HOH HOH . D 4 HOH E 166 574 574 HOH HOH . D 4 HOH E 167 575 575 HOH HOH . D 4 HOH E 168 580 580 HOH HOH . D 4 HOH E 169 582 582 HOH HOH . D 4 HOH E 170 583 583 HOH HOH . D 4 HOH E 171 584 584 HOH HOH . D 4 HOH E 172 585 585 HOH HOH . D 4 HOH E 173 586 586 HOH HOH . D 4 HOH E 174 587 587 HOH HOH . D 4 HOH E 175 588 588 HOH HOH . D 4 HOH E 176 589 589 HOH HOH . D 4 HOH E 177 590 590 HOH HOH . D 4 HOH E 178 591 591 HOH HOH . D 4 HOH E 179 592 592 HOH HOH . D 4 HOH E 180 593 593 HOH HOH . D 4 HOH E 181 594 594 HOH HOH . D 4 HOH E 182 595 595 HOH HOH . D 4 HOH E 183 596 596 HOH HOH . D 4 HOH E 184 597 597 HOH HOH . D 4 HOH E 185 599 599 HOH HOH . D 4 HOH E 186 600 600 HOH HOH . D 4 HOH E 187 601 601 HOH HOH . D 4 HOH E 188 602 602 HOH HOH . E 4 HOH I 1 424 424 HOH HOH . E 4 HOH I 2 487 487 HOH HOH . E 4 HOH I 3 491 491 HOH HOH . E 4 HOH I 4 492 492 HOH HOH . E 4 HOH I 5 499 499 HOH HOH . E 4 HOH I 6 530 530 HOH HOH . E 4 HOH I 7 532 532 HOH HOH . E 4 HOH I 8 547 547 HOH HOH . E 4 HOH I 9 576 576 HOH HOH . E 4 HOH I 10 577 577 HOH HOH . E 4 HOH I 11 578 578 HOH HOH . E 4 HOH I 12 579 579 HOH HOH . E 4 HOH I 13 581 581 HOH HOH . E 4 HOH I 14 598 598 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . C 3 32.429 -8.794 11.093 1 50 ? C1 NAG 400 E 1 HETATM 2 C C2 NAG . . . C 3 33.674 -9.034 11.942 1 50 ? C2 NAG 400 E 1 HETATM 3 C C3 NAG . . . C 3 34.757 -8.015 11.569 1 50 ? C3 NAG 400 E 1 HETATM 4 C C4 NAG . . . C 3 35.065 -8.087 10.067 1 50 ? C4 NAG 400 E 1 HETATM 5 C C5 NAG . . . C 3 33.754 -7.851 9.343 1 50 ? C5 NAG 400 E 1 HETATM 6 C C6 NAG . . . C 3 33.798 -7.833 7.839 1 50 ? C6 NAG 400 E 1 HETATM 7 C C7 NAG . . . C 3 33.782 -9.924 14.204 1 50 ? C7 NAG 400 E 1 HETATM 8 C C8 NAG . . . C 3 34.71 -10.912 13.544 1 50 ? C8 NAG 400 E 1 HETATM 9 N N2 NAG . . . C 3 33.392 -8.933 13.376 1 50 ? N2 NAG 400 E 1 HETATM 10 O O3 NAG . . . C 3 35.958 -8.228 12.308 1 50 ? O3 NAG 400 E 1 HETATM 11 O O4 NAG . . . C 3 35.994 -7.037 9.72 1 50 ? O4 NAG 400 E 1 HETATM 12 O O5 NAG . . . C 3 32.811 -8.904 9.707 1 50 ? O5 NAG 400 E 1 HETATM 13 O O6 NAG . . . C 3 32.39 -7.671 7.469 1 50 ? O6 NAG 400 E 1 HETATM 14 O O7 NAG . . . C 3 33.288 -10.019 15.341 1 50 ? O7 NAG 400 E 1 # _model_server_stats.io_time_ms 113 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #