data_1HAI # _model_server_result.job_id mqbHLpz-YTvJv_XA7DMX9A _model_server_result.datetime_utc '2024-12-27 01:28:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1hai # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":400}' # _entry.id 1HAI # _exptl.entry_id 1HAI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.5 _cell.angle_gamma 90 _cell.entry_id 1HAI _cell.length_a 70.97 _cell.length_b 72.5 _cell.length_c 72.57 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HAI _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? covale ? covale1 C C3 0G6 . H 0G6 1 1_555 B NE2 HIS 43 H HIS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.493 ? covale ? covale2 C C2 0G6 . H 0G6 1 1_555 B OG SER 205 H SER 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.526 ? covale ? covale3 B ND2 ASN 53 H ASN 60 1_555 D C1 NAG . H NAG 400 1_555 G ? ? ? ? ? ? ? ? ? ? ? 1.428 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 303 n n C1 O1 NAG sing 304 n n C1 O5 NAG sing 305 n n C1 H1 NAG sing 306 n n C2 C3 NAG sing 307 n n C2 N2 NAG sing 308 n n C2 H2 NAG sing 309 n n C3 C4 NAG sing 310 n n C3 O3 NAG sing 311 n n C3 H3 NAG sing 312 n n C4 C5 NAG sing 313 n n C4 O4 NAG sing 314 n n C4 H4 NAG sing 315 n n C5 C6 NAG sing 316 n n C5 O5 NAG sing 317 n n C5 H5 NAG sing 318 n n C6 O6 NAG sing 319 n n C6 H61 NAG sing 320 n n C6 H62 NAG sing 321 n n C7 C8 NAG sing 322 n n C7 N2 NAG sing 323 n n C7 O7 NAG doub 324 n n C8 H81 NAG sing 325 n n C8 H82 NAG sing 326 n n C8 H83 NAG sing 327 n n N2 HN2 NAG sing 328 n n O1 HO1 NAG sing 329 n n O3 HO3 NAG sing 330 n n O4 HO4 NAG sing 331 n n O6 HO6 NAG sing 332 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1HAI _atom_sites.fract_transf_matrix[1][1] 0.01409 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002612 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013793 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014014 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 0G6 H 1 1 1 0G6 DPN . D 4 NAG H 1 400 400 NAG NAG . E 5 HOH L 1 416 416 HOH HOH . E 5 HOH L 2 425 425 HOH HOH . E 5 HOH L 3 432 432 HOH HOH . E 5 HOH L 4 463 463 HOH HOH . E 5 HOH L 5 472 472 HOH HOH . E 5 HOH L 6 473 473 HOH HOH . E 5 HOH L 7 484 484 HOH HOH . E 5 HOH L 8 491 491 HOH HOH . E 5 HOH L 9 493 493 HOH HOH . E 5 HOH L 10 506 506 HOH HOH . E 5 HOH L 11 513 513 HOH HOH . E 5 HOH L 12 524 524 HOH HOH . E 5 HOH L 13 533 533 HOH HOH . E 5 HOH L 14 549 549 HOH HOH . E 5 HOH L 15 552 552 HOH HOH . E 5 HOH L 16 557 557 HOH HOH . E 5 HOH L 17 567 567 HOH HOH . E 5 HOH L 18 577 577 HOH HOH . E 5 HOH L 19 588 588 HOH HOH . E 5 HOH L 20 590 590 HOH HOH . E 5 HOH L 21 591 591 HOH HOH . F 5 HOH H 1 401 401 HOH HOH . F 5 HOH H 2 402 402 HOH HOH . F 5 HOH H 3 403 403 HOH HOH . F 5 HOH H 4 404 404 HOH HOH . F 5 HOH H 5 405 405 HOH HOH . F 5 HOH H 6 406 406 HOH HOH . F 5 HOH H 7 407 407 HOH HOH . F 5 HOH H 8 408 408 HOH HOH . F 5 HOH H 9 409 409 HOH HOH . F 5 HOH H 10 410 410 HOH HOH . F 5 HOH H 11 411 411 HOH HOH . F 5 HOH H 12 412 412 HOH HOH . F 5 HOH H 13 413 413 HOH HOH . F 5 HOH H 14 414 414 HOH HOH . F 5 HOH H 15 415 415 HOH HOH . F 5 HOH H 16 417 417 HOH HOH . F 5 HOH H 17 418 418 HOH HOH . F 5 HOH H 18 419 419 HOH HOH . F 5 HOH H 19 420 420 HOH HOH . F 5 HOH H 20 421 421 HOH HOH . F 5 HOH H 21 422 422 HOH HOH . F 5 HOH H 22 423 423 HOH HOH . F 5 HOH H 23 424 424 HOH HOH . F 5 HOH H 24 426 426 HOH HOH . F 5 HOH H 25 427 427 HOH HOH . F 5 HOH H 26 428 428 HOH HOH . F 5 HOH H 27 429 429 HOH HOH . F 5 HOH H 28 430 430 HOH HOH . F 5 HOH H 29 431 431 HOH HOH . F 5 HOH H 30 433 433 HOH HOH . F 5 HOH H 31 434 434 HOH HOH . F 5 HOH H 32 435 435 HOH HOH . F 5 HOH H 33 436 436 HOH HOH . F 5 HOH H 34 437 437 HOH HOH . F 5 HOH H 35 438 438 HOH HOH . F 5 HOH H 36 439 439 HOH HOH . F 5 HOH H 37 440 440 HOH HOH . F 5 HOH H 38 441 441 HOH HOH . F 5 HOH H 39 442 442 HOH HOH . F 5 HOH H 40 443 443 HOH HOH . F 5 HOH H 41 444 444 HOH HOH . F 5 HOH H 42 445 445 HOH HOH . F 5 HOH H 43 446 446 HOH HOH . F 5 HOH H 44 447 447 HOH HOH . F 5 HOH H 45 448 448 HOH HOH . F 5 HOH H 46 449 449 HOH HOH . F 5 HOH H 47 450 450 HOH HOH . F 5 HOH H 48 451 451 HOH HOH . F 5 HOH H 49 452 452 HOH HOH . F 5 HOH H 50 453 453 HOH HOH . F 5 HOH H 51 454 454 HOH HOH . F 5 HOH H 52 455 455 HOH HOH . F 5 HOH H 53 456 456 HOH HOH . F 5 HOH H 54 457 457 HOH HOH . F 5 HOH H 55 458 458 HOH HOH . F 5 HOH H 56 459 459 HOH HOH . F 5 HOH H 57 460 460 HOH HOH . F 5 HOH H 58 461 461 HOH HOH . F 5 HOH H 59 462 462 HOH HOH . F 5 HOH H 60 464 464 HOH HOH . F 5 HOH H 61 465 465 HOH HOH . F 5 HOH H 62 466 466 HOH HOH . F 5 HOH H 63 467 467 HOH HOH . F 5 HOH H 64 468 468 HOH HOH . F 5 HOH H 65 469 469 HOH HOH . F 5 HOH H 66 470 470 HOH HOH . F 5 HOH H 67 471 471 HOH HOH . F 5 HOH H 68 474 474 HOH HOH . F 5 HOH H 69 475 475 HOH HOH . F 5 HOH H 70 476 476 HOH HOH . F 5 HOH H 71 477 477 HOH HOH . F 5 HOH H 72 478 478 HOH HOH . F 5 HOH H 73 479 479 HOH HOH . F 5 HOH H 74 480 480 HOH HOH . F 5 HOH H 75 481 481 HOH HOH . F 5 HOH H 76 482 482 HOH HOH . F 5 HOH H 77 483 483 HOH HOH . F 5 HOH H 78 485 485 HOH HOH . F 5 HOH H 79 486 486 HOH HOH . F 5 HOH H 80 487 487 HOH HOH . F 5 HOH H 81 488 488 HOH HOH . F 5 HOH H 82 489 489 HOH HOH . F 5 HOH H 83 490 490 HOH HOH . F 5 HOH H 84 492 492 HOH HOH . F 5 HOH H 85 494 494 HOH HOH . F 5 HOH H 86 495 495 HOH HOH . F 5 HOH H 87 496 496 HOH HOH . F 5 HOH H 88 497 497 HOH HOH . F 5 HOH H 89 498 498 HOH HOH . F 5 HOH H 90 499 499 HOH HOH . F 5 HOH H 91 500 500 HOH HOH . F 5 HOH H 92 501 501 HOH HOH . F 5 HOH H 93 502 502 HOH HOH . F 5 HOH H 94 503 503 HOH HOH . F 5 HOH H 95 504 504 HOH HOH . F 5 HOH H 96 505 505 HOH HOH . F 5 HOH H 97 507 507 HOH HOH . F 5 HOH H 98 508 508 HOH HOH . F 5 HOH H 99 509 509 HOH HOH . F 5 HOH H 100 510 510 HOH HOH . F 5 HOH H 101 511 511 HOH HOH . F 5 HOH H 102 512 512 HOH HOH . F 5 HOH H 103 514 514 HOH HOH . F 5 HOH H 104 515 515 HOH HOH . F 5 HOH H 105 516 516 HOH HOH . F 5 HOH H 106 517 517 HOH HOH . F 5 HOH H 107 518 518 HOH HOH . F 5 HOH H 108 519 519 HOH HOH . F 5 HOH H 109 520 520 HOH HOH . F 5 HOH H 110 521 521 HOH HOH . F 5 HOH H 111 522 522 HOH HOH . F 5 HOH H 112 523 523 HOH HOH . F 5 HOH H 113 525 525 HOH HOH . F 5 HOH H 114 526 526 HOH HOH . F 5 HOH H 115 527 527 HOH HOH . F 5 HOH H 116 528 528 HOH HOH . F 5 HOH H 117 529 529 HOH HOH . F 5 HOH H 118 530 530 HOH HOH . F 5 HOH H 119 531 531 HOH HOH . F 5 HOH H 120 532 532 HOH HOH . F 5 HOH H 121 534 534 HOH HOH . F 5 HOH H 122 535 535 HOH HOH . F 5 HOH H 123 536 536 HOH HOH . F 5 HOH H 124 537 537 HOH HOH . F 5 HOH H 125 538 538 HOH HOH . F 5 HOH H 126 539 539 HOH HOH . F 5 HOH H 127 540 540 HOH HOH . F 5 HOH H 128 541 541 HOH HOH . F 5 HOH H 129 542 542 HOH HOH . F 5 HOH H 130 543 543 HOH HOH . F 5 HOH H 131 544 544 HOH HOH . F 5 HOH H 132 545 545 HOH HOH . F 5 HOH H 133 546 546 HOH HOH . F 5 HOH H 134 547 547 HOH HOH . F 5 HOH H 135 548 548 HOH HOH . F 5 HOH H 136 550 550 HOH HOH . F 5 HOH H 137 551 551 HOH HOH . F 5 HOH H 138 553 553 HOH HOH . F 5 HOH H 139 554 554 HOH HOH . F 5 HOH H 140 555 555 HOH HOH . F 5 HOH H 141 556 556 HOH HOH . F 5 HOH H 142 558 558 HOH HOH . F 5 HOH H 143 559 559 HOH HOH . F 5 HOH H 144 560 560 HOH HOH . F 5 HOH H 145 561 561 HOH HOH . F 5 HOH H 146 562 562 HOH HOH . F 5 HOH H 147 563 563 HOH HOH . F 5 HOH H 148 564 564 HOH HOH . F 5 HOH H 149 565 565 HOH HOH . F 5 HOH H 150 566 566 HOH HOH . F 5 HOH H 151 568 568 HOH HOH . F 5 HOH H 152 569 569 HOH HOH . F 5 HOH H 153 570 570 HOH HOH . F 5 HOH H 154 571 571 HOH HOH . F 5 HOH H 155 572 572 HOH HOH . F 5 HOH H 156 573 573 HOH HOH . F 5 HOH H 157 574 574 HOH HOH . F 5 HOH H 158 575 575 HOH HOH . F 5 HOH H 159 576 576 HOH HOH . F 5 HOH H 160 578 578 HOH HOH . F 5 HOH H 161 579 579 HOH HOH . F 5 HOH H 162 580 580 HOH HOH . F 5 HOH H 163 581 581 HOH HOH . F 5 HOH H 164 582 582 HOH HOH . F 5 HOH H 165 583 583 HOH HOH . F 5 HOH H 166 584 584 HOH HOH . F 5 HOH H 167 585 585 HOH HOH . F 5 HOH H 168 586 586 HOH HOH . F 5 HOH H 169 587 587 HOH HOH . F 5 HOH H 170 589 589 HOH HOH . F 5 HOH H 171 592 592 HOH HOH . F 5 HOH H 172 593 593 HOH HOH . F 5 HOH H 173 594 594 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 4 32.206 -9.011 11.017 1 53.86 ? C1 NAG 400 H 1 HETATM 2 C C2 NAG . . . D 4 33.4 -9.549 11.83 1 54.99 ? C2 NAG 400 H 1 HETATM 3 C C3 NAG . . . D 4 34.392 -8.362 11.816 1 55 ? C3 NAG 400 H 1 HETATM 4 C C4 NAG . . . D 4 34.816 -8.09 10.39 1 55 ? C4 NAG 400 H 1 HETATM 5 C C5 NAG . . . D 4 33.59 -7.718 9.556 1 55 ? C5 NAG 400 H 1 HETATM 6 C C6 NAG . . . D 4 33.912 -7.521 8.072 1 55 ? C6 NAG 400 H 1 HETATM 7 C C7 NAG . . . D 4 33.45 -10.799 14.061 1 55 ? C7 NAG 400 H 1 HETATM 8 C C8 NAG . . . D 4 33.104 -12.171 13.504 1 54.6 ? C8 NAG 400 H 1 HETATM 9 N N2 NAG . . . D 4 33.101 -9.777 13.206 1 55 ? N2 NAG 400 H 1 HETATM 10 O O3 NAG . . . D 4 35.617 -8.727 12.423 1 55 ? O3 NAG 400 H 1 HETATM 11 O O4 NAG . . . D 4 35.746 -6.974 10.391 1 55 ? O4 NAG 400 H 1 HETATM 12 O O5 NAG . . . D 4 32.598 -8.772 9.648 1 55 ? O5 NAG 400 H 1 HETATM 13 O O6 NAG . . . D 4 32.697 -7.134 7.451 1 55 ? O6 NAG 400 H 1 HETATM 14 O O7 NAG . . . D 4 33.305 -10.512 15.297 1 54.84 ? O7 NAG 400 H 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #