data_1HBH # _model_server_result.job_id 3_N4o7CvnZ34QLecJG4QyA _model_server_result.datetime_utc '2024-10-23 11:34:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1hbh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":144}' # _entry.id 1HBH # _exptl.entry_id 1HBH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1HBH _cell.length_a 62.65 _cell.length_b 96.3 _cell.length_c 62.65 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HBH _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 0 1_555 A N SER 2 A SER 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale2 C C ACE 1 C ACE 0 1_555 C N SER 2 C SER 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? metalc ? metalc1 A NE2 HIS 89 A HIS 88 1_555 E FE HEM . A HEM 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc2 B NE2 HIS 92 B HIS 92 1_555 F FE HEM . B HEM 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc3 C NE2 HIS 89 C HIS 88 1_555 G FE HEM . C HEM 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc4 D NE2 HIS 92 D HIS 92 1_555 H FE HEM . D HEM 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 135 n n CHA C4D HEM doub 136 n n CHA HHA HEM sing 137 n n CHB C4A HEM sing 138 n n CHB C1B HEM doub 139 n n CHB HHB HEM sing 140 n n CHC C4B HEM sing 141 n n CHC C1C HEM doub 142 n n CHC HHC HEM sing 143 n n CHD C4C HEM doub 144 n n CHD C1D HEM sing 145 n n CHD HHD HEM sing 146 n n C1A C2A HEM doub 147 n y C1A NA HEM sing 148 n y C2A C3A HEM sing 149 n y C2A CAA HEM sing 150 n n C3A C4A HEM doub 151 n y C3A CMA HEM sing 152 n n C4A NA HEM sing 153 n y CMA HMA HEM sing 154 n n CMA HMAA HEM sing 155 n n CMA HMAB HEM sing 156 n n CAA CBA HEM sing 157 n n CAA HAA HEM sing 158 n n CAA HAAA HEM sing 159 n n CBA CGA HEM sing 160 n n CBA HBA HEM sing 161 n n CBA HBAA HEM sing 162 n n CGA O1A HEM doub 163 n n CGA O2A HEM sing 164 n n C1B C2B HEM sing 165 n n C1B NB HEM sing 166 n n C2B C3B HEM doub 167 n n C2B CMB HEM sing 168 n n C3B C4B HEM sing 169 n n C3B CAB HEM sing 170 n n C4B NB HEM doub 171 n n CMB HMB HEM sing 172 n n CMB HMBA HEM sing 173 n n CMB HMBB HEM sing 174 n n CAB CBB HEM doub 175 n n CAB HAB HEM sing 176 n n CBB HBB HEM sing 177 n n CBB HBBA HEM sing 178 n n C1C C2C HEM sing 179 n y C1C NC HEM sing 180 n y C2C C3C HEM doub 181 n y C2C CMC HEM sing 182 n n C3C C4C HEM sing 183 n y C3C CAC HEM sing 184 n n C4C NC HEM sing 185 n y CMC HMC HEM sing 186 n n CMC HMCA HEM sing 187 n n CMC HMCB HEM sing 188 n n CAC CBC HEM doub 189 n n CAC HAC HEM sing 190 n n CBC HBC HEM sing 191 n n CBC HBCA HEM sing 192 n n C1D C2D HEM sing 193 n n C1D ND HEM doub 194 n n C2D C3D HEM doub 195 n n C2D CMD HEM sing 196 n n C3D C4D HEM sing 197 n n C3D CAD HEM sing 198 n n C4D ND HEM sing 199 n n CMD HMD HEM sing 200 n n CMD HMDA HEM sing 201 n n CMD HMDB HEM sing 202 n n CAD CBD HEM sing 203 n n CAD HAD HEM sing 204 n n CAD HADA HEM sing 205 n n CBD CGD HEM sing 206 n n CBD HBD HEM sing 207 n n CBD HBDA HEM sing 208 n n CGD O1D HEM doub 209 n n CGD O2D HEM sing 210 n n O2A H2A HEM sing 211 n n O2D H2D HEM sing 212 n n FE NA HEM sing 213 n n FE NB HEM sing 214 n n FE NC HEM sing 215 n n FE ND HEM sing 216 n n # _atom_sites.entry_id 1HBH _atom_sites.fract_transf_matrix[1][1] 0.015962 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010384 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015962 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HEM A 1 144 144 HEM HEM . F 3 HEM B 1 148 148 HEM HEM . G 3 HEM C 1 144 144 HEM HEM . H 3 HEM D 1 148 148 HEM HEM . I 4 HOH A 1 145 751 HOH HOH . I 4 HOH A 2 146 752 HOH HOH . I 4 HOH A 3 147 753 HOH HOH . I 4 HOH A 4 148 754 HOH HOH . I 4 HOH A 5 149 756 HOH HOH . I 4 HOH A 6 150 757 HOH HOH . I 4 HOH A 7 151 758 HOH HOH . I 4 HOH A 8 152 759 HOH HOH . I 4 HOH A 9 153 761 HOH HOH . I 4 HOH A 10 154 764 HOH HOH . I 4 HOH A 11 155 765 HOH HOH . I 4 HOH A 12 156 767 HOH HOH . I 4 HOH A 13 157 768 HOH HOH . I 4 HOH A 14 158 769 HOH HOH . I 4 HOH A 15 159 786 HOH HOH . J 4 HOH B 1 149 755 HOH HOH . J 4 HOH B 2 150 760 HOH HOH . J 4 HOH B 3 151 762 HOH HOH . J 4 HOH B 4 152 763 HOH HOH . J 4 HOH B 5 153 777 HOH HOH . J 4 HOH B 6 154 788 HOH HOH . K 4 HOH C 1 145 766 HOH HOH . K 4 HOH C 2 146 771 HOH HOH . K 4 HOH C 3 147 772 HOH HOH . K 4 HOH C 4 148 773 HOH HOH . K 4 HOH C 5 149 774 HOH HOH . K 4 HOH C 6 150 776 HOH HOH . K 4 HOH C 7 151 778 HOH HOH . K 4 HOH C 8 152 779 HOH HOH . K 4 HOH C 9 153 781 HOH HOH . K 4 HOH C 10 154 784 HOH HOH . K 4 HOH C 11 155 785 HOH HOH . K 4 HOH C 12 156 787 HOH HOH . K 4 HOH C 13 157 789 HOH HOH . L 4 HOH D 1 149 775 HOH HOH . L 4 HOH D 2 150 780 HOH HOH . L 4 HOH D 3 151 782 HOH HOH . L 4 HOH D 4 152 783 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . E 3 6.769 -19.89 11.886 1 29.14 ? CHA HEM 144 A 1 HETATM 2 C CHB HEM . . . E 3 9.085 -15.673 11.334 1 30.46 ? CHB HEM 144 A 1 HETATM 3 C CHC HEM . . . E 3 5.09 -13.234 12.515 1 29.37 ? CHC HEM 144 A 1 HETATM 4 C CHD HEM . . . E 3 2.827 -17.407 13.429 1 29.82 ? CHD HEM 144 A 1 HETATM 5 C C1A HEM . . . E 3 7.719 -18.946 11.604 1 31.31 ? C1A HEM 144 A 1 HETATM 6 C C2A HEM . . . E 3 9.073 -19.261 11.127 1 32.7 ? C2A HEM 144 A 1 HETATM 7 C C3A HEM . . . E 3 9.718 -18.094 10.987 1 32.66 ? C3A HEM 144 A 1 HETATM 8 C C4A HEM . . . E 3 8.795 -17.02 11.358 1 32.27 ? C4A HEM 144 A 1 HETATM 9 C CMA HEM . . . E 3 11.149 -17.787 10.479 1 31.13 ? CMA HEM 144 A 1 HETATM 10 C CAA HEM . . . E 3 9.505 -20.646 10.738 1 34.12 ? CAA HEM 144 A 1 HETATM 11 C CBA HEM . . . E 3 10.664 -21.503 11.044 1 40.25 ? CBA HEM 144 A 1 HETATM 12 C CGA HEM . . . E 3 10.515 -22.937 10.467 1 42.05 ? CGA HEM 144 A 1 HETATM 13 O O1A HEM . . . E 3 11.045 -23.075 9.328 1 41.86 ? O1A HEM 144 A 1 HETATM 14 O O2A HEM . . . E 3 9.862 -23.729 11.238 1 43.52 ? O2A HEM 144 A 1 HETATM 15 C C1B HEM . . . E 3 8.227 -14.635 11.6 1 29.52 ? C1B HEM 144 A 1 HETATM 16 C C2B HEM . . . E 3 8.571 -13.214 11.619 1 28.7 ? C2B HEM 144 A 1 HETATM 17 C C3B HEM . . . E 3 7.452 -12.541 11.915 1 28.34 ? C3B HEM 144 A 1 HETATM 18 C C4B HEM . . . E 3 6.404 -13.526 12.17 1 29.66 ? C4B HEM 144 A 1 HETATM 19 C CMB HEM . . . E 3 9.943 -12.66 11.232 1 27.08 ? CMB HEM 144 A 1 HETATM 20 C CAB HEM . . . E 3 7.222 -11.037 12.025 1 26.94 ? CAB HEM 144 A 1 HETATM 21 C CBB HEM . . . E 3 8.104 -10.324 12.792 1 27.51 ? CBB HEM 144 A 1 HETATM 22 C C1C HEM . . . E 3 4.138 -14.14 12.93 1 28.21 ? C1C HEM 144 A 1 HETATM 23 C C2C HEM . . . E 3 2.892 -13.801 13.58 1 28.15 ? C2C HEM 144 A 1 HETATM 24 C C3C HEM . . . E 3 2.291 -14.978 13.868 1 28.9 ? C3C HEM 144 A 1 HETATM 25 C C4C HEM . . . E 3 3.113 -16.049 13.373 1 28.77 ? C4C HEM 144 A 1 HETATM 26 C CMC HEM . . . E 3 2.438 -12.358 13.9 1 22.71 ? CMC HEM 144 A 1 HETATM 27 C CAC HEM . . . E 3 0.893 -15.15 14.53 1 29.95 ? CAC HEM 144 A 1 HETATM 28 C CBC HEM . . . E 3 0.621 -15.01 15.799 1 28.86 ? CBC HEM 144 A 1 HETATM 29 C C1D HEM . . . E 3 3.72 -18.424 13.079 1 30.7 ? C1D HEM 144 A 1 HETATM 30 C C2D HEM . . . E 3 3.454 -19.853 13.205 1 30.78 ? C2D HEM 144 A 1 HETATM 31 C C3D HEM . . . E 3 4.549 -20.499 12.753 1 29.67 ? C3D HEM 144 A 1 HETATM 32 C C4D HEM . . . E 3 5.538 -19.535 12.377 1 29.67 ? C4D HEM 144 A 1 HETATM 33 C CMD HEM . . . E 3 2.108 -20.429 13.695 1 28.47 ? CMD HEM 144 A 1 HETATM 34 C CAD HEM . . . E 3 4.83 -22.024 12.762 1 30.3 ? CAD HEM 144 A 1 HETATM 35 C CBD HEM . . . E 3 5.441 -22.343 14.173 1 32.69 ? CBD HEM 144 A 1 HETATM 36 C CGD HEM . . . E 3 5.385 -23.734 14.682 1 34.02 ? CGD HEM 144 A 1 HETATM 37 O O1D HEM . . . E 3 6.055 -24.094 15.72 1 36.19 ? O1D HEM 144 A 1 HETATM 38 O O2D HEM . . . E 3 4.592 -24.514 14.133 1 35.07 ? O2D HEM 144 A 1 HETATM 39 N NA HEM . . . E 3 7.589 -17.573 11.775 1 31.4 ? NA HEM 144 A 1 HETATM 40 N NB HEM . . . E 3 6.904 -14.808 11.985 1 29.5 ? NB HEM 144 A 1 HETATM 41 N NC HEM . . . E 3 4.252 -15.518 12.781 1 30.38 ? NC HEM 144 A 1 HETATM 42 N ND HEM . . . E 3 5.013 -18.26 12.589 1 30.68 ? ND HEM 144 A 1 HETATM 43 FE FE HEM . . . E 3 5.847 -16.522 11.924 1 30.75 ? FE HEM 144 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 43 #