data_1HBH
#
_model_server_result.job_id            qolSyuIQGVXKqW5kpArTlw 
_model_server_result.datetime_utc      '2024-10-23 11:30:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1hbh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":148}' 
#
_entry.id    1HBH 
#
_exptl.entry_id    1HBH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1HBH 
_cell.length_a            62.65 
_cell.length_b            96.3 
_cell.length_c            62.65 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1HBH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ACE 1 A ACE 0 1_555 A N SER 2 A SER 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? 
covale ? covale2 C C ACE 1 C ACE 0 1_555 C N SER 2 C SER 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
metalc ? metalc1 A NE2 HIS 89 A HIS 88 1_555 E FE HEM . A HEM 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? 
metalc ? metalc2 B NE2 HIS 92 B HIS 92 1_555 F FE HEM . B HEM 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? 
metalc ? metalc3 C NE2 HIS 89 C HIS 88 1_555 G FE HEM . C HEM 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? 
metalc ? metalc4 D NE2 HIS 92 D HIS 92 1_555 H FE HEM . D HEM 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 135 n n 
CHA C4D HEM doub 136 n n 
CHA HHA HEM sing 137 n n 
CHB C4A HEM sing 138 n n 
CHB C1B HEM doub 139 n n 
CHB HHB HEM sing 140 n n 
CHC C4B HEM sing 141 n n 
CHC C1C HEM doub 142 n n 
CHC HHC HEM sing 143 n n 
CHD C4C HEM doub 144 n n 
CHD C1D HEM sing 145 n n 
CHD HHD HEM sing 146 n n 
C1A C2A HEM doub 147 n y 
C1A NA HEM sing 148 n y 
C2A C3A HEM sing 149 n y 
C2A CAA HEM sing 150 n n 
C3A C4A HEM doub 151 n y 
C3A CMA HEM sing 152 n n 
C4A NA HEM sing 153 n y 
CMA HMA HEM sing 154 n n 
CMA HMAA HEM sing 155 n n 
CMA HMAB HEM sing 156 n n 
CAA CBA HEM sing 157 n n 
CAA HAA HEM sing 158 n n 
CAA HAAA HEM sing 159 n n 
CBA CGA HEM sing 160 n n 
CBA HBA HEM sing 161 n n 
CBA HBAA HEM sing 162 n n 
CGA O1A HEM doub 163 n n 
CGA O2A HEM sing 164 n n 
C1B C2B HEM sing 165 n n 
C1B NB HEM sing 166 n n 
C2B C3B HEM doub 167 n n 
C2B CMB HEM sing 168 n n 
C3B C4B HEM sing 169 n n 
C3B CAB HEM sing 170 n n 
C4B NB HEM doub 171 n n 
CMB HMB HEM sing 172 n n 
CMB HMBA HEM sing 173 n n 
CMB HMBB HEM sing 174 n n 
CAB CBB HEM doub 175 n n 
CAB HAB HEM sing 176 n n 
CBB HBB HEM sing 177 n n 
CBB HBBA HEM sing 178 n n 
C1C C2C HEM sing 179 n y 
C1C NC HEM sing 180 n y 
C2C C3C HEM doub 181 n y 
C2C CMC HEM sing 182 n n 
C3C C4C HEM sing 183 n y 
C3C CAC HEM sing 184 n n 
C4C NC HEM sing 185 n y 
CMC HMC HEM sing 186 n n 
CMC HMCA HEM sing 187 n n 
CMC HMCB HEM sing 188 n n 
CAC CBC HEM doub 189 n n 
CAC HAC HEM sing 190 n n 
CBC HBC HEM sing 191 n n 
CBC HBCA HEM sing 192 n n 
C1D C2D HEM sing 193 n n 
C1D ND HEM doub 194 n n 
C2D C3D HEM doub 195 n n 
C2D CMD HEM sing 196 n n 
C3D C4D HEM sing 197 n n 
C3D CAD HEM sing 198 n n 
C4D ND HEM sing 199 n n 
CMD HMD HEM sing 200 n n 
CMD HMDA HEM sing 201 n n 
CMD HMDB HEM sing 202 n n 
CAD CBD HEM sing 203 n n 
CAD HAD HEM sing 204 n n 
CAD HADA HEM sing 205 n n 
CBD CGD HEM sing 206 n n 
CBD HBD HEM sing 207 n n 
CBD HBDA HEM sing 208 n n 
CGD O1D HEM doub 209 n n 
CGD O2D HEM sing 210 n n 
O2A H2A HEM sing 211 n n 
O2D H2D HEM sing 212 n n 
FE NA HEM sing 213 n n 
FE NB HEM sing 214 n n 
FE NC HEM sing 215 n n 
FE ND HEM sing 216 n n 
#
_atom_sites.entry_id                     1HBH 
_atom_sites.fract_transf_matrix[1][1]    0.015962 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010384 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015962 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 HEM A 1 144 144 HEM HEM . 
F 3 HEM B 1 148 148 HEM HEM . 
G 3 HEM C 1 144 144 HEM HEM . 
H 3 HEM D 1 148 148 HEM HEM . 
I 4 HOH A 1 145 751 HOH HOH . 
I 4 HOH A 2 146 752 HOH HOH . 
I 4 HOH A 3 147 753 HOH HOH . 
I 4 HOH A 4 148 754 HOH HOH . 
I 4 HOH A 5 149 756 HOH HOH . 
I 4 HOH A 6 150 757 HOH HOH . 
I 4 HOH A 7 151 758 HOH HOH . 
I 4 HOH A 8 152 759 HOH HOH . 
I 4 HOH A 9 153 761 HOH HOH . 
I 4 HOH A 10 154 764 HOH HOH . 
I 4 HOH A 11 155 765 HOH HOH . 
I 4 HOH A 12 156 767 HOH HOH . 
I 4 HOH A 13 157 768 HOH HOH . 
I 4 HOH A 14 158 769 HOH HOH . 
I 4 HOH A 15 159 786 HOH HOH . 
J 4 HOH B 1 149 755 HOH HOH . 
J 4 HOH B 2 150 760 HOH HOH . 
J 4 HOH B 3 151 762 HOH HOH . 
J 4 HOH B 4 152 763 HOH HOH . 
J 4 HOH B 5 153 777 HOH HOH . 
J 4 HOH B 6 154 788 HOH HOH . 
K 4 HOH C 1 145 766 HOH HOH . 
K 4 HOH C 2 146 771 HOH HOH . 
K 4 HOH C 3 147 772 HOH HOH . 
K 4 HOH C 4 148 773 HOH HOH . 
K 4 HOH C 5 149 774 HOH HOH . 
K 4 HOH C 6 150 776 HOH HOH . 
K 4 HOH C 7 151 778 HOH HOH . 
K 4 HOH C 8 152 779 HOH HOH . 
K 4 HOH C 9 153 781 HOH HOH . 
K 4 HOH C 10 154 784 HOH HOH . 
K 4 HOH C 11 155 785 HOH HOH . 
K 4 HOH C 12 156 787 HOH HOH . 
K 4 HOH C 13 157 789 HOH HOH . 
L 4 HOH D 1 149 775 HOH HOH . 
L 4 HOH D 2 150 780 HOH HOH . 
L 4 HOH D 3 151 782 HOH HOH . 
L 4 HOH D 4 152 783 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . F 3 -5.954 19.739 25.579 1 27.67 ? CHA HEM 148 B 1 
HETATM 2 C CHB HEM . . . F 3 -5.998 15.27 27.464 1 22.39 ? CHB HEM 148 B 1 
HETATM 3 C CHC HEM . . . F 3 -4.487 13.411 23.233 1 20.42 ? CHC HEM 148 B 1 
HETATM 4 C CHD HEM . . . F 3 -4.231 17.927 21.399 1 26.51 ? CHD HEM 148 B 1 
HETATM 5 C C1A HEM . . . F 3 -6.138 18.704 26.475 1 26.42 ? C1A HEM 148 B 1 
HETATM 6 C C2A HEM . . . F 3 -6.717 18.736 27.804 1 27.91 ? C2A HEM 148 B 1 
HETATM 7 C C3A HEM . . . F 3 -6.676 17.491 28.312 1 26.38 ? C3A HEM 148 B 1 
HETATM 8 C C4A HEM . . . F 3 -6.094 16.627 27.29 1 25.35 ? C4A HEM 148 B 1 
HETATM 9 C CMA HEM . . . F 3 -7.198 16.993 29.68 1 27.02 ? CMA HEM 148 B 1 
HETATM 10 C CAA HEM . . . F 3 -7.305 19.905 28.594 1 28.89 ? CAA HEM 148 B 1 
HETATM 11 C CBA HEM . . . F 3 -7.087 21.301 28.195 1 33.81 ? CBA HEM 148 B 1 
HETATM 12 C CGA HEM . . . F 3 -8.134 22.271 28.767 1 36.15 ? CGA HEM 148 B 1 
HETATM 13 O O1A HEM . . . F 3 -8.966 21.769 29.567 1 36.08 ? O1A HEM 148 B 1 
HETATM 14 O O2A HEM . . . F 3 -7.922 23.428 28.329 1 38.73 ? O2A HEM 148 B 1 
HETATM 15 C C1B HEM . . . F 3 -5.696 14.41 26.429 1 20.24 ? C1B HEM 148 B 1 
HETATM 16 C C2B HEM . . . F 3 -5.6 12.982 26.603 1 18.74 ? C2B HEM 148 B 1 
HETATM 17 C C3B HEM . . . F 3 -5.142 12.492 25.461 1 19.62 ? C3B HEM 148 B 1 
HETATM 18 C C4B HEM . . . F 3 -4.969 13.611 24.527 1 21.6 ? C4B HEM 148 B 1 
HETATM 19 C CMB HEM . . . F 3 -5.954 12.255 27.925 1 18.35 ? CMB HEM 148 B 1 
HETATM 20 C CAB HEM . . . F 3 -4.877 11.031 25.046 1 22.05 ? CAB HEM 148 B 1 
HETATM 21 C CBB HEM . . . F 3 -4.617 10.088 25.992 1 22.82 ? CBB HEM 148 B 1 
HETATM 22 C C1C HEM . . . F 3 -4.261 14.507 22.439 1 23.61 ? C1C HEM 148 B 1 
HETATM 23 C C2C HEM . . . F 3 -3.685 14.4 21.087 1 22.22 ? C2C HEM 148 B 1 
HETATM 24 C C3C HEM . . . F 3 -3.65 15.631 20.575 1 22.28 ? C3C HEM 148 B 1 
HETATM 25 C C4C HEM . . . F 3 -4.166 16.555 21.544 1 23.19 ? C4C HEM 148 B 1 
HETATM 26 C CMC HEM . . . F 3 -3.28 13.04 20.501 1 21.28 ? CMC HEM 148 B 1 
HETATM 27 C CAC HEM . . . F 3 -3.142 16.043 19.189 1 21.53 ? CAC HEM 148 B 1 
HETATM 28 C CBC HEM . . . F 3 -2.824 15.014 18.375 1 25.07 ? CBC HEM 148 B 1 
HETATM 29 C C1D HEM . . . F 3 -4.638 18.841 22.381 1 29.8 ? C1D HEM 148 B 1 
HETATM 30 C C2D HEM . . . F 3 -4.711 20.274 22.236 1 29.12 ? C2D HEM 148 B 1 
HETATM 31 C C3D HEM . . . F 3 -5.222 20.765 23.364 1 30.73 ? C3D HEM 148 B 1 
HETATM 32 C C4D HEM . . . F 3 -5.488 19.688 24.268 1 29.59 ? C4D HEM 148 B 1 
HETATM 33 C CMD HEM . . . F 3 -4.229 21.028 20.985 1 29.13 ? CMD HEM 148 B 1 
HETATM 34 C CAD HEM . . . F 3 -5.412 22.27 23.751 1 33.85 ? CAD HEM 148 B 1 
HETATM 35 C CBD HEM . . . F 3 -4.224 22.789 24.59 1 38.61 ? CBD HEM 148 B 1 
HETATM 36 C CGD HEM . . . F 3 -4.16 24.301 24.729 1 41.04 ? CGD HEM 148 B 1 
HETATM 37 O O1D HEM . . . F 3 -3.567 24.964 23.836 1 41.52 ? O1D HEM 148 B 1 
HETATM 38 O O2D HEM . . . F 3 -4.707 24.731 25.794 1 43.25 ? O2D HEM 148 B 1 
HETATM 39 N NA HEM . . . F 3 -5.776 17.388 26.177 1 24.68 ? NA HEM 148 B 1 
HETATM 40 N NB HEM . . . F 3 -5.307 14.792 25.153 1 21.02 ? NB HEM 148 B 1 
HETATM 41 N NC HEM . . . F 3 -4.559 15.855 22.695 1 25.1 ? NC HEM 148 B 1 
HETATM 42 N ND HEM . . . F 3 -5.146 18.489 23.639 1 28.08 ? ND HEM 148 B 1 
HETATM 43 FE FE HEM . . . F 3 -5.5 16.67 24.323 1 25.71 ? FE HEM 148 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          14 
_model_server_stats.element_count           43 
#