data_1HBK # _model_server_result.job_id Pow7WIj2oo6g8nE4M5zQjw _model_server_result.datetime_utc '2024-11-28 23:50:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1hbk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1090}' # _entry.id 1HBK # _exptl.entry_id 1HBK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 228.371 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MYRISTIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1HBK _cell.length_a 48.665 _cell.length_b 48.665 _cell.length_c 48.411 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1HBK _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 1 A HIS 0 1_555 E NI NI . A NI 1092 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc2 A N HIS 1 A HIS 0 1_555 E NI NI . A NI 1092 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc3 A OE2 GLU 8 A GLU 7 3_554 D NI NI . A NI 1091 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc4 A NE2 HIS 50 A HIS 49 1_555 D NI NI . A NI 1091 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.877 ? metalc ? metalc5 D NI NI . A NI 1091 1_555 F O HOH . A HOH 2008 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 1.739 ? metalc ? metalc6 D NI NI . A NI 1091 1_555 F O HOH . A HOH 2009 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc7 D NI NI . A NI 1091 1_555 F O HOH . A HOH 2038 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc8 E NI NI . A NI 1092 1_555 F O HOH . A HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.78 ? metalc ? metalc9 E NI NI . A NI 1092 1_555 F O HOH . A HOH 2043 2_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc10 E NI NI . A NI 1092 1_555 F O HOH . A HOH 2071 4_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc11 E NI NI . A NI 1092 1_555 F O HOH . A HOH 2076 2_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? # _chem_comp.formula 'C14 H28 O2' _chem_comp.formula_weight 228.371 _chem_comp.id MYR _chem_comp.mon_nstd_flag . _chem_comp.name 'MYRISTIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 MYR doub 323 n n C1 O2 MYR sing 324 n n C1 C2 MYR sing 325 n n O2 HO2 MYR sing 326 n n C2 C3 MYR sing 327 n n C2 H21 MYR sing 328 n n C2 H22 MYR sing 329 n n C3 C4 MYR sing 330 n n C3 H31 MYR sing 331 n n C3 H32 MYR sing 332 n n C4 C5 MYR sing 333 n n C4 H41 MYR sing 334 n n C4 H42 MYR sing 335 n n C5 C6 MYR sing 336 n n C5 H51 MYR sing 337 n n C5 H52 MYR sing 338 n n C6 C7 MYR sing 339 n n C6 H61 MYR sing 340 n n C6 H62 MYR sing 341 n n C7 C8 MYR sing 342 n n C7 H71 MYR sing 343 n n C7 H72 MYR sing 344 n n C8 C9 MYR sing 345 n n C8 H81 MYR sing 346 n n C8 H82 MYR sing 347 n n C9 C10 MYR sing 348 n n C9 H91 MYR sing 349 n n C9 H92 MYR sing 350 n n C10 C11 MYR sing 351 n n C10 H101 MYR sing 352 n n C10 H102 MYR sing 353 n n C11 C12 MYR sing 354 n n C11 H111 MYR sing 355 n n C11 H112 MYR sing 356 n n C12 C13 MYR sing 357 n n C12 H121 MYR sing 358 n n C12 H122 MYR sing 359 n n C13 C14 MYR sing 360 n n C13 H131 MYR sing 361 n n C13 H132 MYR sing 362 n n C14 H141 MYR sing 363 n n C14 H142 MYR sing 364 n n C14 H143 MYR sing 365 n n # _atom_sites.entry_id 1HBK _atom_sites.fract_transf_matrix[1][1] 0.020549 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020549 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020656 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 COA A 1 1089 1089 COA COA . C 3 MYR A 1 1090 1090 MYR MYR . D 4 NI A 1 1091 1091 NI NI . E 4 NI A 1 1092 1092 NI NI . F 5 HOH A 1 2001 2001 HOH HOH . F 5 HOH A 2 2002 2002 HOH HOH . F 5 HOH A 3 2003 2003 HOH HOH . F 5 HOH A 4 2004 2004 HOH HOH . F 5 HOH A 5 2005 2005 HOH HOH . F 5 HOH A 6 2006 2006 HOH HOH . F 5 HOH A 7 2007 2007 HOH HOH . F 5 HOH A 8 2008 2008 HOH HOH . F 5 HOH A 9 2009 2009 HOH HOH . F 5 HOH A 10 2010 2010 HOH HOH . F 5 HOH A 11 2011 2011 HOH HOH . F 5 HOH A 12 2012 2012 HOH HOH . F 5 HOH A 13 2013 2013 HOH HOH . F 5 HOH A 14 2014 2014 HOH HOH . F 5 HOH A 15 2015 2015 HOH HOH . F 5 HOH A 16 2016 2016 HOH HOH . F 5 HOH A 17 2017 2017 HOH HOH . F 5 HOH A 18 2018 2018 HOH HOH . F 5 HOH A 19 2019 2019 HOH HOH . F 5 HOH A 20 2020 2020 HOH HOH . F 5 HOH A 21 2021 2021 HOH HOH . F 5 HOH A 22 2022 2022 HOH HOH . F 5 HOH A 23 2023 2023 HOH HOH . F 5 HOH A 24 2024 2024 HOH HOH . F 5 HOH A 25 2025 2025 HOH HOH . F 5 HOH A 26 2026 2026 HOH HOH . F 5 HOH A 27 2027 2027 HOH HOH . F 5 HOH A 28 2028 2028 HOH HOH . F 5 HOH A 29 2029 2029 HOH HOH . F 5 HOH A 30 2030 2030 HOH HOH . F 5 HOH A 31 2031 2031 HOH HOH . F 5 HOH A 32 2032 2032 HOH HOH . F 5 HOH A 33 2033 2033 HOH HOH . F 5 HOH A 34 2034 2034 HOH HOH . F 5 HOH A 35 2035 2035 HOH HOH . F 5 HOH A 36 2036 2036 HOH HOH . F 5 HOH A 37 2037 2037 HOH HOH . F 5 HOH A 38 2038 2038 HOH HOH . F 5 HOH A 39 2039 2039 HOH HOH . F 5 HOH A 40 2040 2040 HOH HOH . F 5 HOH A 41 2041 2041 HOH HOH . F 5 HOH A 42 2042 2042 HOH HOH . F 5 HOH A 43 2043 2043 HOH HOH . F 5 HOH A 44 2044 2044 HOH HOH . F 5 HOH A 45 2045 2045 HOH HOH . F 5 HOH A 46 2046 2046 HOH HOH . F 5 HOH A 47 2047 2047 HOH HOH . F 5 HOH A 48 2048 2048 HOH HOH . F 5 HOH A 49 2049 2049 HOH HOH . F 5 HOH A 50 2050 2050 HOH HOH . F 5 HOH A 51 2051 2051 HOH HOH . F 5 HOH A 52 2052 2052 HOH HOH . F 5 HOH A 53 2053 2053 HOH HOH . F 5 HOH A 54 2054 2054 HOH HOH . F 5 HOH A 55 2055 2055 HOH HOH . F 5 HOH A 56 2056 2056 HOH HOH . F 5 HOH A 57 2057 2057 HOH HOH . F 5 HOH A 58 2058 2058 HOH HOH . F 5 HOH A 59 2059 2059 HOH HOH . F 5 HOH A 60 2060 2060 HOH HOH . F 5 HOH A 61 2061 2061 HOH HOH . F 5 HOH A 62 2062 2062 HOH HOH . F 5 HOH A 63 2063 2063 HOH HOH . F 5 HOH A 64 2064 2064 HOH HOH . F 5 HOH A 65 2065 2065 HOH HOH . F 5 HOH A 66 2066 2066 HOH HOH . F 5 HOH A 67 2067 2067 HOH HOH . F 5 HOH A 68 2068 2068 HOH HOH . F 5 HOH A 69 2069 2069 HOH HOH . F 5 HOH A 70 2070 2070 HOH HOH . F 5 HOH A 71 2071 2071 HOH HOH . F 5 HOH A 72 2072 2072 HOH HOH . F 5 HOH A 73 2073 2073 HOH HOH . F 5 HOH A 74 2074 2074 HOH HOH . F 5 HOH A 75 2075 2075 HOH HOH . F 5 HOH A 76 2076 2076 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MYR . . . C 3 -0.416 15.519 17.471 1 53.81 ? C1 MYR 1090 A 1 HETATM 2 C C2 MYR . . . C 3 -0.913 16.674 16.618 1 53.69 ? C2 MYR 1090 A 1 HETATM 3 C C3 MYR . . . C 3 -1.106 17.923 17.454 1 53.64 ? C3 MYR 1090 A 1 HETATM 4 C C4 MYR . . . C 3 -2.328 17.842 18.349 1 51.45 ? C4 MYR 1090 A 1 HETATM 5 C C5 MYR . . . C 3 -3.6 18.02 17.545 1 51.03 ? C5 MYR 1090 A 1 HETATM 6 C C6 MYR . . . C 3 -4.697 18.663 18.39 1 51.3 ? C6 MYR 1090 A 1 HETATM 7 C C7 MYR . . . C 3 -6.008 18.84 17.61 1 50.22 ? C7 MYR 1090 A 1 HETATM 8 C C8 MYR . . . C 3 -6.674 17.511 17.3 1 48.92 ? C8 MYR 1090 A 1 HETATM 9 C C9 MYR . . . C 3 -7.139 16.848 18.574 1 48.57 ? C9 MYR 1090 A 1 HETATM 10 C C10 MYR . . . C 3 -7.51 15.396 18.356 1 48.26 ? C10 MYR 1090 A 1 HETATM 11 C C11 MYR . . . C 3 -8.733 15.234 17.495 1 48.18 ? C11 MYR 1090 A 1 HETATM 12 C C12 MYR . . . C 3 -9.092 13.763 17.355 1 46.96 ? C12 MYR 1090 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 1215 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 12 #